Wall clock time and date at job start Tue Mar 31 2020 21:34:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50696 * 109.46993 * 2 1 4 4 O 1.21279 * 120.00302 * 359.97438 * 3 2 1 5 5 N 1.34782 * 120.00057 * 179.97438 * 3 2 1 6 6 C 1.47020 * 125.64755 * 359.97438 * 5 3 2 7 7 C 1.54325 * 107.40310 * 178.89975 * 6 5 3 8 8 C 1.55402 * 102.82443 * 337.97359 * 7 6 5 9 9 H 1.09003 * 110.92779 * 277.25408 * 8 7 6 10 10 N 1.46507 * 111.03659 * 153.47336 * 8 7 6 11 11 C 1.34770 * 120.00033 * 92.68168 * 10 8 7 12 12 O 1.21587 * 120.00055 * 0.02562 * 11 10 8 13 13 N 1.34773 * 120.00230 * 179.97438 * 11 10 8 14 14 C 1.46499 * 120.00099 * 179.97438 * 13 11 10 15 15 C 1.53038 * 109.46377 * 275.06774 * 14 13 11 16 16 C 1.53194 * 109.31548 * 178.61269 * 15 14 13 17 17 N 1.46927 * 108.76903 * 54.64080 * 16 15 14 18 18 C 1.36937 * 120.62694 * 126.41816 * 17 16 15 19 19 H 1.08008 * 119.99674 * 207.65681 * 18 17 16 20 20 C 1.38814 * 120.00473 * 27.65852 * 18 17 16 21 21 N 1.31618 * 119.99919 * 17.36738 * 20 18 17 22 22 Si 1.86802 * 119.99855 * 197.36950 * 20 18 17 23 23 H 1.48492 * 109.47168 * 59.99672 * 22 20 18 24 24 H 1.48505 * 109.46704 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.46951 * 299.99383 * 22 20 18 26 26 C 1.46927 * 118.74159 * 306.38551 * 17 16 15 27 27 C 1.53049 * 109.45891 * 155.00567 * 14 13 11 28 28 C 1.47426 * 125.64839 * 180.02562 * 5 3 2 29 29 H 1.09000 * 109.47426 * 60.00456 * 1 2 3 30 30 H 1.09006 * 109.46985 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47796 * 299.99811 * 1 2 3 32 32 H 1.09004 * 109.47553 * 239.99525 * 2 1 3 33 33 H 1.09008 * 109.47176 * 119.99691 * 2 1 3 34 34 H 1.08998 * 109.88366 * 298.39235 * 6 5 3 35 35 H 1.09003 * 109.88432 * 59.40286 * 6 5 3 36 36 H 1.08999 * 110.72099 * 96.23915 * 7 6 5 37 37 H 1.08997 * 110.72259 * 219.52297 * 7 6 5 38 38 H 0.97004 * 119.99893 * 272.68176 * 10 8 7 39 39 H 0.97002 * 120.00119 * 0.02562 * 13 11 10 40 40 H 1.08999 * 109.46084 * 35.03494 * 14 13 11 41 41 H 1.09000 * 109.50127 * 298.57217 * 15 14 13 42 42 H 1.09007 * 109.49578 * 58.66738 * 15 14 13 43 43 H 1.08993 * 109.58622 * 294.85480 * 16 15 14 44 44 H 1.09001 * 109.59002 * 174.42570 * 16 15 14 45 45 H 0.96995 * 119.99787 * 180.02562 * 21 20 18 46 46 H 1.09002 * 109.58891 * 293.82885 * 26 17 16 47 47 H 1.08992 * 109.58776 * 173.39803 * 26 17 16 48 48 H 1.09003 * 109.49064 * 301.33672 * 27 14 13 49 49 H 1.08990 * 109.49988 * 61.43286 * 27 14 13 50 50 H 1.08998 * 110.36878 * 322.93541 * 28 5 3 51 51 H 1.08996 * 110.36466 * 85.25477 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 8 1.2442 2.3426 -0.0005 5 7 3.3574 1.6671 0.0005 6 6 4.4181 0.6491 0.0017 7 6 5.7706 1.3918 -0.0264 8 6 5.3894 2.7807 -0.6099 9 1 5.3416 2.7459 -1.6984 10 7 6.3254 3.8146 -0.1611 11 6 7.4012 4.1218 -0.9125 12 8 7.5947 3.5412 -1.9632 13 7 8.2620 5.0732 -0.4999 14 6 9.4317 5.4067 -1.3165 15 6 10.5723 4.4392 -0.9926 16 6 11.7819 4.7690 -1.8729 17 7 12.1241 6.1866 -1.6942 18 6 13.3961 6.5592 -1.3500 19 1 13.5607 7.4742 -0.8002 20 6 14.4740 5.7610 -1.7078 21 7 14.3351 4.8504 -2.6479 22 14 16.1216 5.9794 -0.8550 23 1 15.9616 5.7348 0.6009 24 1 17.1007 5.0136 -1.4152 25 1 16.6123 7.3638 -1.0734 26 6 11.0759 7.1969 -1.8924 27 6 9.8743 6.8398 -1.0118 28 6 3.9832 3.0020 0.0011 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 4.3476 0.0413 0.9037 35 1 4.3248 0.0155 -0.8803 36 1 6.1749 1.4949 0.9806 37 1 6.4789 0.8788 -0.6769 38 1 6.1708 4.2780 0.6769 39 1 8.1074 5.5367 0.3381 40 1 9.1734 5.3231 -2.3721 41 1 10.8479 4.5399 0.0571 42 1 10.2485 3.4168 -1.1877 43 1 11.5352 4.5816 -2.9179 44 1 12.6284 4.1488 -1.5782 45 1 15.0882 4.2924 -2.8976 46 1 10.7717 7.2075 -2.9390 47 1 11.4565 8.1786 -1.6104 48 1 9.0535 7.5261 -1.2206 49 1 10.1565 6.9180 0.0380 50 1 3.4061 3.6918 -0.6147 51 1 4.0673 3.3810 1.0196 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340449668.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:47 Heat of formation + Delta-G solvation = -46.149983 kcal Electronic energy + Delta-G solvation = -29444.992009 eV Core-core repulsion = 25379.632767 eV Total energy + Delta-G solvation = -4065.359242 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -40.68748 -39.85689 -38.11349 -37.23577 -34.49736 -34.29437 -33.18054 -32.14592 -30.91454 -30.00909 -29.55108 -28.71477 -25.40648 -24.76467 -23.13434 -22.41521 -22.19240 -21.28349 -20.70148 -19.59626 -19.39646 -18.24821 -17.65302 -17.09492 -16.75951 -16.00618 -15.79566 -15.20817 -15.03524 -14.76986 -14.44978 -14.21644 -14.00318 -13.86953 -13.65094 -13.49110 -13.26974 -12.99593 -12.80929 -12.71397 -12.69532 -12.40577 -12.28119 -12.05652 -11.91812 -11.60040 -11.48004 -11.23263 -11.11022 -10.92696 -10.71687 -10.39025 -10.26417 -10.24049 -10.12892 -10.00171 -9.75099 -9.56453 -9.28517 -9.09744 -8.64293 -8.39601 -6.68578 -5.78072 -3.20636 2.22969 2.32433 2.87540 3.28421 3.38454 3.44472 3.45288 3.95005 4.11365 4.31043 4.38816 4.49742 4.55998 4.63935 4.70313 4.77160 4.81799 5.01329 5.19529 5.29513 5.31973 5.37603 5.39087 5.41060 5.46614 5.52143 5.63706 5.65545 5.69462 5.76633 5.84039 5.85093 6.09357 6.24484 6.33587 6.36210 6.44891 6.58556 6.66178 6.75835 6.87753 6.94892 7.03820 7.08211 7.39508 7.69068 7.75406 7.79696 8.08849 8.45381 8.70797 9.21440 9.84891 10.41479 11.30434 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.032989 B = 0.001793 C = 0.001743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.557654 B =15609.387987 C =16059.804791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.139 4.139 3 C 0.528 3.472 4 O -0.539 6.539 5 N -0.620 5.620 6 C 0.101 3.899 7 C -0.146 4.146 8 C 0.155 3.845 9 H 0.108 0.892 10 N -0.742 5.742 11 C 0.704 3.296 12 O -0.586 6.586 13 N -0.738 5.738 14 C 0.168 3.832 15 C -0.146 4.146 16 C 0.173 3.827 17 N -0.592 5.592 18 C -0.255 4.255 19 H 0.065 0.935 20 C 0.003 3.997 21 N -0.901 5.901 22 Si 0.902 3.098 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.283 1.283 26 C 0.148 3.852 27 C -0.139 4.139 28 C 0.101 3.899 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.092 0.908 38 H 0.395 0.605 39 H 0.390 0.610 40 H 0.081 0.919 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.021 0.979 44 H 0.089 0.911 45 H 0.255 0.745 46 H 0.021 0.979 47 H 0.058 0.942 48 H 0.055 0.945 49 H 0.062 0.938 50 H 0.086 0.914 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.489 -8.972 8.705 26.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.179 4.179 3 C 0.317 3.683 4 O -0.416 6.416 5 N -0.355 5.355 6 C -0.022 4.022 7 C -0.186 4.186 8 C 0.047 3.953 9 H 0.126 0.874 10 N -0.398 5.398 11 C 0.404 3.596 12 O -0.463 6.463 13 N -0.391 5.391 14 C 0.065 3.935 15 C -0.187 4.187 16 C 0.047 3.953 17 N -0.315 5.315 18 C -0.385 4.385 19 H 0.083 0.917 20 C -0.196 4.196 21 N -0.545 5.545 22 Si 0.732 3.268 23 H -0.211 1.211 24 H -0.216 1.216 25 H -0.209 1.209 26 C 0.021 3.979 27 C -0.179 4.179 28 C -0.023 4.023 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.112 0.888 33 H 0.111 0.889 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.100 0.900 37 H 0.111 0.889 38 H 0.229 0.771 39 H 0.223 0.777 40 H 0.100 0.900 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.039 0.961 44 H 0.107 0.893 45 H 0.065 0.935 46 H 0.038 0.962 47 H 0.077 0.923 48 H 0.073 0.927 49 H 0.081 0.919 50 H 0.104 0.896 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -23.652 -9.128 7.616 26.471 hybrid contribution 0.872 0.377 1.318 1.625 sum -22.780 -8.751 8.933 25.986 Atomic orbital electron populations 1.21547 0.92863 1.01718 1.03423 1.21618 0.98596 0.93270 1.04428 1.20535 0.80062 0.92110 0.75579 1.90721 1.54267 1.46792 1.49826 1.48423 1.05330 1.07785 1.73974 1.22089 0.86488 0.91351 1.02254 1.23165 0.96084 0.96321 1.02993 1.21842 0.86448 0.86429 1.00545 0.87421 1.44930 1.26364 1.42734 1.25808 1.15954 0.79511 0.80607 0.83503 1.90941 1.76153 1.55377 1.23843 1.45532 1.26818 1.40551 1.26208 1.20927 0.82891 0.94814 0.94891 1.22575 0.96987 0.97792 1.01302 1.20769 0.93864 0.85839 0.94839 1.44101 1.06241 1.00421 1.80734 1.19137 0.82506 1.08199 1.28655 0.91687 1.25046 0.97677 0.99924 0.96943 1.70029 1.30937 1.24676 1.28875 0.86374 0.83633 0.77419 0.79348 1.21089 1.21645 1.20885 1.20840 0.88295 0.93388 0.95365 1.22346 0.99311 0.94437 1.01763 1.22349 0.92864 0.85641 1.01452 0.91903 0.91927 0.91981 0.88774 0.88895 0.90937 0.90770 0.90028 0.88921 0.77062 0.77669 0.90046 0.92829 0.92850 0.96132 0.89270 0.93530 0.96158 0.92341 0.92653 0.91911 0.89571 0.90988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.84 9.20 37.16 0.34 -0.50 16 2 C -0.14 -0.79 5.61 -27.89 -0.16 -0.95 16 3 C 0.53 4.92 7.85 -10.98 -0.09 4.83 16 4 O -0.54 -7.16 16.24 5.56 0.09 -7.07 16 5 N -0.62 -4.94 3.33 -170.52 -0.57 -5.50 16 6 C 0.10 0.58 6.48 -3.06 -0.02 0.56 16 7 C -0.15 -1.06 6.67 -24.76 -0.17 -1.23 16 8 C 0.15 1.38 3.42 -65.64 -0.22 1.15 16 9 H 0.11 1.20 7.54 -51.93 -0.39 0.81 16 10 N -0.74 -7.06 5.21 -56.44 -0.29 -7.35 16 11 C 0.70 9.90 8.53 -86.93 -0.74 9.16 16 12 O -0.59 -10.88 15.64 5.29 0.08 -10.80 16 13 N -0.74 -9.83 5.08 -58.64 -0.30 -10.13 16 14 C 0.17 2.87 2.42 -67.89 -0.16 2.70 16 15 C -0.15 -2.87 5.65 -26.61 -0.15 -3.02 16 16 C 0.17 4.18 5.31 -3.71 -0.02 4.16 16 17 N -0.59 -14.64 2.99 -172.32 -0.52 -15.16 16 18 C -0.26 -6.92 9.58 -15.06 -0.14 -7.07 16 19 H 0.07 1.71 7.89 -52.48 -0.41 1.30 16 20 C 0.00 0.08 4.91 -17.43 -0.09 -0.01 16 21 N -0.90 -26.19 11.19 55.49 0.62 -25.57 16 22 Si 0.90 21.51 29.59 -169.99 -5.03 16.48 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 26 C 0.15 3.02 6.52 -3.71 -0.02 2.99 16 27 C -0.14 -2.25 5.55 -26.61 -0.15 -2.40 16 28 C 0.10 0.82 6.56 -2.52 -0.02 0.80 16 29 H 0.06 0.46 8.10 -51.93 -0.42 0.04 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.44 8.10 -51.93 -0.42 0.02 16 32 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.09 0.36 8.14 -51.92 -0.42 -0.06 16 34 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.40 2.62 8.58 -40.82 -0.35 2.27 16 39 H 0.39 3.97 8.62 -40.82 -0.35 3.62 16 40 H 0.08 1.59 7.58 -51.93 -0.39 1.19 16 41 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.09 2.41 6.04 -51.93 -0.31 2.09 16 45 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 46 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 47 H 0.06 1.15 7.93 -51.93 -0.41 0.73 16 48 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 49 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 50 H 0.09 0.81 8.04 -51.93 -0.42 0.39 16 51 H 0.07 0.51 8.00 -51.93 -0.42 0.09 16 LS Contribution 405.40 15.07 6.11 6.11 Total: -1.00 -34.64 405.40 -10.54 -45.18 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -8.93 Total: 2.61 kcal Atomic # 6 Polarization: 13.01 SS G_CDS: -1.80 Total: 11.20 kcal Atomic # 7 Polarization: -62.66 SS G_CDS: -1.05 Total: -63.72 kcal Atomic # 8 Polarization: -18.04 SS G_CDS: 0.17 Total: -17.87 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.48 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -34.64 -10.54 -45.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340449668.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.973 kcal (2) G-P(sol) polarization free energy of solvation -34.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds