Wall clock time and date at job start Tue Mar 31 2020 21:34:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 C 1.50696 * 109.46993 * 2 1
4 4 O 1.21279 * 120.00302 * 359.97438 * 3 2 1
5 5 N 1.34782 * 120.00057 * 179.97438 * 3 2 1
6 6 C 1.47020 * 125.64755 * 359.97438 * 5 3 2
7 7 C 1.54325 * 107.40310 * 178.89975 * 6 5 3
8 8 C 1.55402 * 102.82443 * 337.97359 * 7 6 5
9 9 H 1.09003 * 110.92779 * 277.25408 * 8 7 6
10 10 N 1.46507 * 111.03659 * 153.47336 * 8 7 6
11 11 C 1.34770 * 120.00033 * 92.68168 * 10 8 7
12 12 O 1.21587 * 120.00055 * 0.02562 * 11 10 8
13 13 N 1.34773 * 120.00230 * 179.97438 * 11 10 8
14 14 C 1.46499 * 120.00099 * 179.97438 * 13 11 10
15 15 C 1.53038 * 109.46377 * 275.06774 * 14 13 11
16 16 C 1.53194 * 109.31548 * 178.61269 * 15 14 13
17 17 N 1.46927 * 108.76903 * 54.64080 * 16 15 14
18 18 C 1.36937 * 120.62694 * 126.41816 * 17 16 15
19 19 H 1.08008 * 119.99674 * 207.65681 * 18 17 16
20 20 C 1.38814 * 120.00473 * 27.65852 * 18 17 16
21 21 N 1.31618 * 119.99919 * 17.36738 * 20 18 17
22 22 Si 1.86802 * 119.99855 * 197.36950 * 20 18 17
23 23 H 1.48492 * 109.47168 * 59.99672 * 22 20 18
24 24 H 1.48505 * 109.46704 * 180.02562 * 22 20 18
25 25 H 1.48498 * 109.46951 * 299.99383 * 22 20 18
26 26 C 1.46927 * 118.74159 * 306.38551 * 17 16 15
27 27 C 1.53049 * 109.45891 * 155.00567 * 14 13 11
28 28 C 1.47426 * 125.64839 * 180.02562 * 5 3 2
29 29 H 1.09000 * 109.47426 * 60.00456 * 1 2 3
30 30 H 1.09006 * 109.46985 * 180.02562 * 1 2 3
31 31 H 1.08998 * 109.47796 * 299.99811 * 1 2 3
32 32 H 1.09004 * 109.47553 * 239.99525 * 2 1 3
33 33 H 1.09008 * 109.47176 * 119.99691 * 2 1 3
34 34 H 1.08998 * 109.88366 * 298.39235 * 6 5 3
35 35 H 1.09003 * 109.88432 * 59.40286 * 6 5 3
36 36 H 1.08999 * 110.72099 * 96.23915 * 7 6 5
37 37 H 1.08997 * 110.72259 * 219.52297 * 7 6 5
38 38 H 0.97004 * 119.99893 * 272.68176 * 10 8 7
39 39 H 0.97002 * 120.00119 * 0.02562 * 13 11 10
40 40 H 1.08999 * 109.46084 * 35.03494 * 14 13 11
41 41 H 1.09000 * 109.50127 * 298.57217 * 15 14 13
42 42 H 1.09007 * 109.49578 * 58.66738 * 15 14 13
43 43 H 1.08993 * 109.58622 * 294.85480 * 16 15 14
44 44 H 1.09001 * 109.59002 * 174.42570 * 16 15 14
45 45 H 0.96995 * 119.99787 * 180.02562 * 21 20 18
46 46 H 1.09002 * 109.58891 * 293.82885 * 26 17 16
47 47 H 1.08992 * 109.58776 * 173.39803 * 26 17 16
48 48 H 1.09003 * 109.49064 * 301.33672 * 27 14 13
49 49 H 1.08990 * 109.49988 * 61.43286 * 27 14 13
50 50 H 1.08998 * 110.36878 * 322.93541 * 28 5 3
51 51 H 1.08996 * 110.36466 * 85.25477 * 28 5 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0322 1.4208 0.0000
4 8 1.2442 2.3426 -0.0005
5 7 3.3574 1.6671 0.0005
6 6 4.4181 0.6491 0.0017
7 6 5.7706 1.3918 -0.0264
8 6 5.3894 2.7807 -0.6099
9 1 5.3416 2.7459 -1.6984
10 7 6.3254 3.8146 -0.1611
11 6 7.4012 4.1218 -0.9125
12 8 7.5947 3.5412 -1.9632
13 7 8.2620 5.0732 -0.4999
14 6 9.4317 5.4067 -1.3165
15 6 10.5723 4.4392 -0.9926
16 6 11.7819 4.7690 -1.8729
17 7 12.1241 6.1866 -1.6942
18 6 13.3961 6.5592 -1.3500
19 1 13.5607 7.4742 -0.8002
20 6 14.4740 5.7610 -1.7078
21 7 14.3351 4.8504 -2.6479
22 14 16.1216 5.9794 -0.8550
23 1 15.9616 5.7348 0.6009
24 1 17.1007 5.0136 -1.4152
25 1 16.6123 7.3638 -1.0734
26 6 11.0759 7.1969 -1.8924
27 6 9.8743 6.8398 -1.0118
28 6 3.9832 3.0020 0.0011
29 1 -0.3634 0.5137 -0.8900
30 1 -0.3633 -1.0277 0.0005
31 1 -0.3634 0.5138 0.8899
32 1 1.8934 -0.5139 -0.8900
33 1 1.8933 -0.5138 0.8901
34 1 4.3476 0.0413 0.9037
35 1 4.3248 0.0155 -0.8803
36 1 6.1749 1.4949 0.9806
37 1 6.4789 0.8788 -0.6769
38 1 6.1708 4.2780 0.6769
39 1 8.1074 5.5367 0.3381
40 1 9.1734 5.3231 -2.3721
41 1 10.8479 4.5399 0.0571
42 1 10.2485 3.4168 -1.1877
43 1 11.5352 4.5816 -2.9179
44 1 12.6284 4.1488 -1.5782
45 1 15.0882 4.2924 -2.8976
46 1 10.7717 7.2075 -2.9390
47 1 11.4565 8.1786 -1.6104
48 1 9.0535 7.5261 -1.2206
49 1 10.1565 6.9180 0.0380
50 1 3.4061 3.6918 -0.6147
51 1 4.0673 3.3810 1.0196
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001340449668.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:34:47
Heat of formation + Delta-G solvation = -46.149983 kcal
Electronic energy + Delta-G solvation = -29444.992009 eV
Core-core repulsion = 25379.632767 eV
Total energy + Delta-G solvation = -4065.359242 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.211 amu
Computer time = 1.32 seconds
Orbital eigenvalues (eV)
-40.68748 -39.85689 -38.11349 -37.23577 -34.49736 -34.29437 -33.18054 -32.14592
-30.91454 -30.00909 -29.55108 -28.71477 -25.40648 -24.76467 -23.13434 -22.41521
-22.19240 -21.28349 -20.70148 -19.59626 -19.39646 -18.24821 -17.65302 -17.09492
-16.75951 -16.00618 -15.79566 -15.20817 -15.03524 -14.76986 -14.44978 -14.21644
-14.00318 -13.86953 -13.65094 -13.49110 -13.26974 -12.99593 -12.80929 -12.71397
-12.69532 -12.40577 -12.28119 -12.05652 -11.91812 -11.60040 -11.48004 -11.23263
-11.11022 -10.92696 -10.71687 -10.39025 -10.26417 -10.24049 -10.12892 -10.00171
-9.75099 -9.56453 -9.28517 -9.09744 -8.64293 -8.39601 -6.68578 -5.78072
-3.20636 2.22969 2.32433 2.87540 3.28421 3.38454 3.44472 3.45288
3.95005 4.11365 4.31043 4.38816 4.49742 4.55998 4.63935 4.70313
4.77160 4.81799 5.01329 5.19529 5.29513 5.31973 5.37603 5.39087
5.41060 5.46614 5.52143 5.63706 5.65545 5.69462 5.76633 5.84039
5.85093 6.09357 6.24484 6.33587 6.36210 6.44891 6.58556 6.66178
6.75835 6.87753 6.94892 7.03820 7.08211 7.39508 7.69068 7.75406
7.79696 8.08849 8.45381 8.70797 9.21440 9.84891 10.41479 11.30434
Molecular weight = 338.21amu
Principal moments of inertia in cm(-1)
A = 0.032989 B = 0.001793 C = 0.001743
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 848.557654 B =15609.387987 C =16059.804791
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C -0.139 4.139
3 C 0.528 3.472
4 O -0.539 6.539
5 N -0.620 5.620
6 C 0.101 3.899
7 C -0.146 4.146
8 C 0.155 3.845
9 H 0.108 0.892
10 N -0.742 5.742
11 C 0.704 3.296
12 O -0.586 6.586
13 N -0.738 5.738
14 C 0.168 3.832
15 C -0.146 4.146
16 C 0.173 3.827
17 N -0.592 5.592
18 C -0.255 4.255
19 H 0.065 0.935
20 C 0.003 3.997
21 N -0.901 5.901
22 Si 0.902 3.098
23 H -0.284 1.284
24 H -0.291 1.291
25 H -0.283 1.283
26 C 0.148 3.852
27 C -0.139 4.139
28 C 0.101 3.899
29 H 0.062 0.938
30 H 0.062 0.938
31 H 0.061 0.939
32 H 0.094 0.906
33 H 0.093 0.907
34 H 0.072 0.928
35 H 0.074 0.926
36 H 0.081 0.919
37 H 0.092 0.908
38 H 0.395 0.605
39 H 0.390 0.610
40 H 0.081 0.919
41 H 0.053 0.947
42 H 0.053 0.947
43 H 0.021 0.979
44 H 0.089 0.911
45 H 0.255 0.745
46 H 0.021 0.979
47 H 0.058 0.942
48 H 0.055 0.945
49 H 0.062 0.938
50 H 0.086 0.914
51 H 0.072 0.928
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -23.489 -8.972 8.705 26.608
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.196 4.196
2 C -0.179 4.179
3 C 0.317 3.683
4 O -0.416 6.416
5 N -0.355 5.355
6 C -0.022 4.022
7 C -0.186 4.186
8 C 0.047 3.953
9 H 0.126 0.874
10 N -0.398 5.398
11 C 0.404 3.596
12 O -0.463 6.463
13 N -0.391 5.391
14 C 0.065 3.935
15 C -0.187 4.187
16 C 0.047 3.953
17 N -0.315 5.315
18 C -0.385 4.385
19 H 0.083 0.917
20 C -0.196 4.196
21 N -0.545 5.545
22 Si 0.732 3.268
23 H -0.211 1.211
24 H -0.216 1.216
25 H -0.209 1.209
26 C 0.021 3.979
27 C -0.179 4.179
28 C -0.023 4.023
29 H 0.081 0.919
30 H 0.081 0.919
31 H 0.080 0.920
32 H 0.112 0.888
33 H 0.111 0.889
34 H 0.091 0.909
35 H 0.092 0.908
36 H 0.100 0.900
37 H 0.111 0.889
38 H 0.229 0.771
39 H 0.223 0.777
40 H 0.100 0.900
41 H 0.072 0.928
42 H 0.072 0.928
43 H 0.039 0.961
44 H 0.107 0.893
45 H 0.065 0.935
46 H 0.038 0.962
47 H 0.077 0.923
48 H 0.073 0.927
49 H 0.081 0.919
50 H 0.104 0.896
51 H 0.090 0.910
Dipole moment (debyes) X Y Z Total
from point charges -23.652 -9.128 7.616 26.471
hybrid contribution 0.872 0.377 1.318 1.625
sum -22.780 -8.751 8.933 25.986
Atomic orbital electron populations
1.21547 0.92863 1.01718 1.03423 1.21618 0.98596 0.93270 1.04428
1.20535 0.80062 0.92110 0.75579 1.90721 1.54267 1.46792 1.49826
1.48423 1.05330 1.07785 1.73974 1.22089 0.86488 0.91351 1.02254
1.23165 0.96084 0.96321 1.02993 1.21842 0.86448 0.86429 1.00545
0.87421 1.44930 1.26364 1.42734 1.25808 1.15954 0.79511 0.80607
0.83503 1.90941 1.76153 1.55377 1.23843 1.45532 1.26818 1.40551
1.26208 1.20927 0.82891 0.94814 0.94891 1.22575 0.96987 0.97792
1.01302 1.20769 0.93864 0.85839 0.94839 1.44101 1.06241 1.00421
1.80734 1.19137 0.82506 1.08199 1.28655 0.91687 1.25046 0.97677
0.99924 0.96943 1.70029 1.30937 1.24676 1.28875 0.86374 0.83633
0.77419 0.79348 1.21089 1.21645 1.20885 1.20840 0.88295 0.93388
0.95365 1.22346 0.99311 0.94437 1.01763 1.22349 0.92864 0.85641
1.01452 0.91903 0.91927 0.91981 0.88774 0.88895 0.90937 0.90770
0.90028 0.88921 0.77062 0.77669 0.90046 0.92829 0.92850 0.96132
0.89270 0.93530 0.96158 0.92341 0.92653 0.91911 0.89571 0.90988
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -0.84 9.20 37.16 0.34 -0.50 16
2 C -0.14 -0.79 5.61 -27.89 -0.16 -0.95 16
3 C 0.53 4.92 7.85 -10.98 -0.09 4.83 16
4 O -0.54 -7.16 16.24 5.56 0.09 -7.07 16
5 N -0.62 -4.94 3.33 -170.52 -0.57 -5.50 16
6 C 0.10 0.58 6.48 -3.06 -0.02 0.56 16
7 C -0.15 -1.06 6.67 -24.76 -0.17 -1.23 16
8 C 0.15 1.38 3.42 -65.64 -0.22 1.15 16
9 H 0.11 1.20 7.54 -51.93 -0.39 0.81 16
10 N -0.74 -7.06 5.21 -56.44 -0.29 -7.35 16
11 C 0.70 9.90 8.53 -86.93 -0.74 9.16 16
12 O -0.59 -10.88 15.64 5.29 0.08 -10.80 16
13 N -0.74 -9.83 5.08 -58.64 -0.30 -10.13 16
14 C 0.17 2.87 2.42 -67.89 -0.16 2.70 16
15 C -0.15 -2.87 5.65 -26.61 -0.15 -3.02 16
16 C 0.17 4.18 5.31 -3.71 -0.02 4.16 16
17 N -0.59 -14.64 2.99 -172.32 -0.52 -15.16 16
18 C -0.26 -6.92 9.58 -15.06 -0.14 -7.07 16
19 H 0.07 1.71 7.89 -52.48 -0.41 1.30 16
20 C 0.00 0.08 4.91 -17.43 -0.09 -0.01 16
21 N -0.90 -26.19 11.19 55.49 0.62 -25.57 16
22 Si 0.90 21.51 29.59 -169.99 -5.03 16.48 16
23 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16
24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16
25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16
26 C 0.15 3.02 6.52 -3.71 -0.02 2.99 16
27 C -0.14 -2.25 5.55 -26.61 -0.15 -2.40 16
28 C 0.10 0.82 6.56 -2.52 -0.02 0.80 16
29 H 0.06 0.46 8.10 -51.93 -0.42 0.04 16
30 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16
31 H 0.06 0.44 8.10 -51.93 -0.42 0.02 16
32 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16
33 H 0.09 0.36 8.14 -51.92 -0.42 -0.06 16
34 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16
35 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16
36 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16
37 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16
38 H 0.40 2.62 8.58 -40.82 -0.35 2.27 16
39 H 0.39 3.97 8.62 -40.82 -0.35 3.62 16
40 H 0.08 1.59 7.58 -51.93 -0.39 1.19 16
41 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16
42 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16
43 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16
44 H 0.09 2.41 6.04 -51.93 -0.31 2.09 16
45 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16
46 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16
47 H 0.06 1.15 7.93 -51.93 -0.41 0.73 16
48 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16
49 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16
50 H 0.09 0.81 8.04 -51.93 -0.42 0.39 16
51 H 0.07 0.51 8.00 -51.93 -0.42 0.09 16
LS Contribution 405.40 15.07 6.11 6.11
Total: -1.00 -34.64 405.40 -10.54 -45.18
By element:
Atomic # 1 Polarization: 11.54 SS G_CDS: -8.93 Total: 2.61 kcal
Atomic # 6 Polarization: 13.01 SS G_CDS: -1.80 Total: 11.20 kcal
Atomic # 7 Polarization: -62.66 SS G_CDS: -1.05 Total: -63.72 kcal
Atomic # 8 Polarization: -18.04 SS G_CDS: 0.17 Total: -17.87 kcal
Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.48 kcal
Total LS contribution 6.11 Total: 6.11 kcal
Total: -34.64 -10.54 -45.18 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001340449668.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -0.973 kcal
(2) G-P(sol) polarization free energy of solvation -34.640 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.613 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.537 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.177 kcal
(6) G-S(sol) free energy of system = (1) + (5) -46.150 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.32 seconds