Wall clock time and date at job start Tue Mar 31 2020 22:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42895 * 114.00456 * 2 1 4 4 C 1.52999 * 109.47378 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47306 * 179.97438 * 4 3 2 6 6 C 1.36742 * 127.13415 * 95.28117 * 5 4 3 7 7 C 1.50691 * 126.34896 * 359.97438 * 6 5 4 8 8 C 1.52996 * 109.47574 * 269.72092 * 7 6 5 9 9 C 1.52998 * 109.47278 * 180.02562 * 8 7 6 10 10 C 1.50707 * 109.47160 * 179.97438 * 9 8 7 11 11 H 1.07998 * 119.99413 * 359.72641 * 10 9 8 12 12 C 1.37877 * 120.00046 * 179.97438 * 10 9 8 13 13 N 1.31507 * 119.99924 * 179.72528 * 12 10 9 14 14 Si 1.86798 * 119.99959 * 359.73122 * 12 10 9 15 15 H 1.48495 * 109.47582 * 89.99499 * 14 12 10 16 16 H 1.48501 * 109.46942 * 210.00040 * 14 12 10 17 17 H 1.48506 * 109.47276 * 329.99415 * 14 12 10 18 18 N 1.30295 * 107.30316 * 179.73531 * 6 5 4 19 19 N 1.28537 * 110.05402 * 0.26220 * 18 6 5 20 20 C 1.31214 * 109.85906 * 359.97438 * 19 18 6 21 21 N 1.38584 * 126.47221 * 180.02562 * 20 19 18 22 22 C 1.47013 * 111.00217 * 58.71227 * 21 20 19 23 23 C 1.53090 * 109.25911 * 177.61034 * 22 21 20 24 24 O 1.43019 * 109.26149 * 56.85037 * 23 22 21 25 25 C 1.43016 * 113.73349 * 301.32957 * 24 23 22 26 26 H 1.09006 * 109.50690 * 298.73002 * 25 24 23 27 27 C 1.53004 * 109.50329 * 178.60510 * 25 24 23 28 28 C 1.47019 * 110.99817 * 295.07708 * 21 20 19 29 29 H 1.09006 * 109.46909 * 300.00794 * 1 2 3 30 30 H 1.08998 * 109.46853 * 59.99967 * 1 2 3 31 31 H 1.08996 * 109.47602 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47460 * 59.99485 * 3 2 1 33 33 H 1.09000 * 109.46777 * 299.99786 * 3 2 1 34 34 H 1.09004 * 109.46719 * 59.99983 * 4 3 2 35 35 H 1.08992 * 109.47309 * 299.99833 * 4 3 2 36 36 H 1.09000 * 109.47017 * 149.71427 * 7 6 5 37 37 H 1.09009 * 109.47021 * 29.71734 * 7 6 5 38 38 H 1.09000 * 109.47491 * 59.99625 * 8 7 6 39 39 H 1.09001 * 109.46798 * 300.00154 * 8 7 6 40 40 H 1.08995 * 109.47219 * 59.99867 * 9 8 7 41 41 H 1.08996 * 109.47277 * 299.99318 * 9 8 7 42 42 H 0.97006 * 120.00330 * 180.02562 * 13 12 10 43 43 H 1.09007 * 109.50479 * 297.54844 * 22 21 20 44 44 H 1.08994 * 109.50462 * 57.67233 * 22 21 20 45 45 H 1.09004 * 109.50792 * 296.91072 * 23 22 21 46 46 H 1.08998 * 109.54037 * 176.80542 * 23 22 21 47 47 H 1.08997 * 109.47281 * 300.21841 * 27 25 24 48 48 H 1.09005 * 109.46865 * 60.22002 * 27 25 24 49 49 H 1.09003 * 109.46869 * 180.21348 * 27 25 24 50 50 H 1.09004 * 109.50778 * 302.32434 * 28 21 20 51 51 H 1.08997 * 109.50498 * 62.41260 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 4.1315 2.5228 0.0000 6 6 4.5585 3.2368 1.0852 7 6 4.5047 2.7924 2.5242 8 6 3.1774 3.2329 3.1447 9 6 3.1231 2.7823 4.6059 10 6 1.8160 3.2168 5.2173 11 1 1.0980 3.7638 4.6244 12 6 1.5390 2.9204 6.5350 13 7 0.4007 3.3042 7.0701 14 14 2.7808 1.9737 7.5603 15 1 3.7022 2.9281 8.2276 16 1 2.0671 1.1739 8.5880 17 1 3.5602 1.0663 6.6803 18 7 5.0254 4.3704 0.6440 19 7 4.9180 4.4231 -0.6358 20 6 4.3730 3.3166 -1.0833 21 7 4.0996 3.0097 -2.4068 22 6 5.3243 3.0434 -3.2194 23 6 4.9872 2.6413 -4.6576 24 8 3.9755 3.5146 -5.1668 25 6 2.7685 3.5062 -4.3997 26 1 2.3394 2.5042 -4.4071 27 6 1.7707 4.4946 -5.0065 28 6 3.0830 3.9170 -2.9588 29 1 -0.3633 0.5140 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.6887 1.8464 0.8899 33 1 1.6887 1.8462 -0.8900 34 1 3.8574 0.6434 -0.8892 35 1 3.8568 0.6438 0.8908 36 1 5.3305 3.2430 3.0747 37 1 4.5855 1.7064 2.5723 38 1 2.3516 2.7824 2.5942 39 1 3.0966 4.3189 3.0965 40 1 3.9489 3.2333 5.1561 41 1 3.2041 1.6965 4.6545 42 1 0.2060 3.0960 7.9973 43 1 5.7391 4.0514 -3.2108 44 1 6.0534 2.3456 -2.8077 45 1 4.6227 1.6141 -4.6725 46 1 5.8808 2.7194 -5.2769 47 1 2.2016 5.4958 -5.0004 48 1 1.5471 4.2015 -6.0324 49 1 0.8524 4.4906 -4.4192 50 1 2.1761 3.8569 -2.3570 51 1 3.4616 4.9390 -2.9454 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001341590629.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:02:47 Heat of formation + Delta-G solvation = -11.418814 kcal Electronic energy + Delta-G solvation = -30664.277356 eV Core-core repulsion = 26600.424170 eV Total energy + Delta-G solvation = -4063.853186 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.07690 -40.03076 -38.21064 -36.32503 -35.53845 -34.65526 -33.24396 -32.45750 -30.39255 -30.07380 -28.84695 -27.49636 -26.53518 -25.98016 -23.91728 -23.71739 -23.37119 -21.64700 -20.69344 -20.47291 -20.08329 -17.75535 -17.07520 -16.91534 -16.75314 -16.36121 -16.25153 -15.90739 -15.58853 -15.34810 -14.94463 -14.86469 -14.67045 -14.31239 -14.24225 -13.88780 -13.40835 -13.08681 -12.77463 -12.71405 -12.56183 -12.40221 -12.24394 -12.02574 -11.92054 -11.76322 -11.64912 -11.56968 -11.46990 -11.16451 -11.06402 -10.87402 -10.65633 -10.26066 -10.10962 -10.07796 -9.92408 -9.85863 -9.75921 -9.27149 -9.12701 -8.87178 -8.57982 -6.08276 -4.06992 1.58920 1.99114 2.81548 3.14496 3.28378 3.34550 3.35869 3.37796 3.74589 4.32256 4.38196 4.41390 4.43869 4.49658 4.62549 4.69462 4.72778 4.80973 4.92489 4.97761 5.02784 5.07526 5.10204 5.14408 5.20305 5.24939 5.25873 5.30352 5.38374 5.39801 5.48825 5.51003 5.55130 5.62399 5.64844 5.74750 5.80093 5.88218 5.97744 6.21988 6.40351 6.42247 6.49774 6.76387 6.76594 6.82635 7.04659 7.20170 7.33191 7.73479 8.48642 8.72067 8.95875 9.53670 11.05164 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.014775 B = 0.002799 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.673552 B =10000.089847 C =10761.904914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.386 6.386 3 C 0.049 3.951 4 C 0.117 3.883 5 N -0.461 5.461 6 C 0.210 3.790 7 C -0.041 4.041 8 C -0.095 4.095 9 C -0.012 4.012 10 C -0.521 4.521 11 H 0.070 0.930 12 C 0.067 3.933 13 N -0.903 5.903 14 Si 0.880 3.120 15 H -0.276 1.276 16 H -0.288 1.288 17 H -0.265 1.265 18 N -0.287 5.287 19 N -0.305 5.305 20 C 0.328 3.672 21 N -0.461 5.461 22 C 0.029 3.971 23 C 0.068 3.932 24 O -0.379 6.379 25 C 0.092 3.908 26 H 0.069 0.931 27 C -0.145 4.145 28 C 0.034 3.966 29 H 0.050 0.950 30 H 0.041 0.959 31 H 0.089 0.911 32 H 0.065 0.935 33 H 0.054 0.946 34 H 0.105 0.895 35 H 0.107 0.893 36 H 0.100 0.900 37 H 0.080 0.920 38 H 0.051 0.949 39 H 0.063 0.937 40 H 0.016 0.984 41 H 0.017 0.983 42 H 0.263 0.737 43 H 0.065 0.935 44 H 0.087 0.913 45 H 0.061 0.939 46 H 0.105 0.895 47 H 0.066 0.934 48 H 0.069 0.931 49 H 0.074 0.926 50 H 0.086 0.914 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.314 -6.272 -24.748 26.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.304 6.304 3 C -0.029 4.029 4 C -0.007 4.007 5 N -0.155 5.155 6 C -0.057 4.057 7 C -0.081 4.081 8 C -0.133 4.133 9 C -0.050 4.050 10 C -0.559 4.559 11 H 0.088 0.912 12 C -0.135 4.135 13 N -0.542 5.542 14 Si 0.707 3.293 15 H -0.202 1.202 16 H -0.214 1.214 17 H -0.189 1.189 18 N -0.127 5.127 19 N -0.148 5.148 20 C -0.028 4.028 21 N -0.187 5.187 22 C -0.099 4.099 23 C -0.010 4.010 24 O -0.298 6.298 25 C 0.034 3.966 26 H 0.087 0.913 27 C -0.203 4.203 28 C -0.093 4.093 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.108 0.892 32 H 0.084 0.916 33 H 0.073 0.927 34 H 0.123 0.877 35 H 0.125 0.875 36 H 0.118 0.882 37 H 0.098 0.902 38 H 0.070 0.930 39 H 0.082 0.918 40 H 0.034 0.966 41 H 0.035 0.965 42 H 0.073 0.927 43 H 0.083 0.917 44 H 0.106 0.894 45 H 0.080 0.920 46 H 0.123 0.877 47 H 0.085 0.915 48 H 0.088 0.912 49 H 0.093 0.907 50 H 0.104 0.896 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.771 -5.455 -24.778 26.020 hybrid contribution -0.044 -0.973 0.986 1.386 sum 5.727 -6.428 -23.793 25.302 Atomic orbital electron populations 1.22798 0.79871 1.03100 1.00575 1.87763 1.20626 1.26460 1.95587 1.22739 0.92435 0.85876 1.01812 1.21530 0.92744 0.80306 1.06102 1.46206 1.46757 1.15983 1.06564 1.25335 0.98495 0.89753 0.92072 1.20441 1.02584 1.01293 0.83773 1.21500 0.92420 1.01386 0.98036 1.19572 0.97891 0.96324 0.91167 1.21085 1.01619 1.36497 0.96720 0.91158 1.25027 0.95222 0.95427 0.97776 1.69911 1.23393 1.46927 1.13972 0.86776 0.81712 0.80583 0.80205 1.20192 1.21416 1.18945 1.74114 1.19927 1.16359 1.02325 1.74571 1.18002 1.17896 1.04350 1.22145 1.03646 0.89035 0.87991 1.58805 1.11518 1.52179 0.96154 1.22870 0.90384 1.02969 0.93667 1.22672 0.92030 0.93867 0.92387 1.88018 1.24230 1.65305 1.52224 1.22179 0.85962 0.99910 0.88517 0.91280 1.21756 0.97616 0.99237 1.01693 1.22935 0.94960 0.95281 0.96155 0.93133 0.94076 0.89206 0.91638 0.92729 0.87694 0.87487 0.88173 0.90154 0.93049 0.91790 0.96576 0.96460 0.92695 0.91682 0.89422 0.92049 0.87698 0.91488 0.91213 0.90721 0.89593 0.91712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 101.05 1.11 1.43 16 2 O -0.39 -4.61 10.70 -35.23 -0.38 -4.98 16 3 C 0.05 0.57 6.26 37.16 0.23 0.81 16 4 C 0.12 1.29 6.44 -4.04 -0.03 1.27 16 5 N -0.46 -6.25 2.81 -114.09 -0.32 -6.57 16 6 C 0.21 3.32 7.32 -154.02 -1.13 2.19 16 7 C -0.04 -0.63 5.58 -27.89 -0.16 -0.79 16 8 C -0.09 -1.79 5.13 -26.73 -0.14 -1.93 16 9 C -0.01 -0.27 4.04 -27.88 -0.11 -0.39 16 10 C -0.52 -14.53 9.66 -34.44 -0.33 -14.86 16 11 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 12 C 0.07 1.91 5.47 -17.82 -0.10 1.82 16 13 N -0.90 -27.56 13.96 55.43 0.77 -26.79 16 14 Si 0.88 21.25 27.47 -169.99 -4.67 16.58 16 15 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 16 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 17 H -0.26 -6.04 6.54 56.52 0.37 -5.67 16 18 N -0.29 -5.18 12.18 32.99 0.40 -4.78 16 19 N -0.30 -5.15 12.16 30.32 0.37 -4.78 16 20 C 0.33 4.58 6.47 -318.87 -2.06 2.51 16 21 N -0.46 -5.09 4.74 -174.21 -0.83 -5.91 16 22 C 0.03 0.27 5.54 -3.72 -0.02 0.25 16 23 C 0.07 0.51 7.01 37.20 0.26 0.77 16 24 O -0.38 -3.60 10.47 -35.23 -0.37 -3.97 16 25 C 0.09 0.78 3.43 -26.68 -0.09 0.69 16 26 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 27 C -0.15 -1.00 9.57 37.16 0.36 -0.64 16 28 C 0.03 0.35 4.87 -3.71 -0.02 0.33 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.07 0.88 6.84 -51.93 -0.36 0.53 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.11 1.12 7.10 -51.93 -0.37 0.75 16 36 H 0.10 1.49 8.14 -51.93 -0.42 1.07 16 37 H 0.08 1.06 7.17 -51.92 -0.37 0.69 16 38 H 0.05 0.96 6.84 -51.93 -0.36 0.60 16 39 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 40 H 0.02 0.36 7.58 -51.93 -0.39 -0.03 16 41 H 0.02 0.38 7.19 -51.93 -0.37 0.01 16 42 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 43 H 0.06 0.72 8.13 -51.93 -0.42 0.29 16 44 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 50 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 51 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 410.45 15.07 6.19 6.19 Total: -1.00 -33.60 410.45 -10.05 -43.64 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -8.99 Total: -2.09 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: -2.22 Total: -6.53 kcal Atomic # 7 Polarization: -49.24 SS G_CDS: 0.40 Total: -48.84 kcal Atomic # 8 Polarization: -8.20 SS G_CDS: -0.75 Total: -8.95 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.67 Total: 16.58 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -33.60 -10.05 -43.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341590629.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.225 kcal (2) G-P(sol) polarization free energy of solvation -33.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds