Wall clock time and date at job start Tue Mar 31 2020 22:02:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42895 * 114.00456 * 2 1 4 4 C 1.52999 * 109.47378 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47306 * 179.97438 * 4 3 2 6 6 C 1.36742 * 127.13415 * 95.28117 * 5 4 3 7 7 C 1.50691 * 126.34896 * 359.97438 * 6 5 4 8 8 C 1.52996 * 109.47574 * 269.72092 * 7 6 5 9 9 C 1.52998 * 109.47278 * 180.02562 * 8 7 6 10 10 C 1.50707 * 109.47160 * 179.97438 * 9 8 7 11 11 H 1.07998 * 119.99413 * 359.72641 * 10 9 8 12 12 C 1.37877 * 120.00046 * 179.97438 * 10 9 8 13 13 N 1.31507 * 119.99924 * 179.72528 * 12 10 9 14 14 Si 1.86798 * 119.99959 * 359.73122 * 12 10 9 15 15 H 1.48495 * 109.47582 * 89.99499 * 14 12 10 16 16 H 1.48501 * 109.46942 * 210.00040 * 14 12 10 17 17 H 1.48506 * 109.47276 * 329.99415 * 14 12 10 18 18 N 1.30295 * 107.30316 * 179.73531 * 6 5 4 19 19 N 1.28537 * 110.05402 * 0.26220 * 18 6 5 20 20 C 1.31214 * 109.85906 * 359.97438 * 19 18 6 21 21 N 1.38584 * 126.47221 * 180.02562 * 20 19 18 22 22 C 1.47013 * 111.00217 * 58.71227 * 21 20 19 23 23 C 1.53090 * 109.25911 * 177.61034 * 22 21 20 24 24 O 1.43019 * 109.26149 * 56.85037 * 23 22 21 25 25 C 1.43016 * 113.73349 * 301.32957 * 24 23 22 26 26 H 1.09006 * 109.50690 * 298.73002 * 25 24 23 27 27 C 1.53004 * 109.50329 * 178.60510 * 25 24 23 28 28 C 1.47019 * 110.99817 * 295.07708 * 21 20 19 29 29 H 1.09006 * 109.46909 * 300.00794 * 1 2 3 30 30 H 1.08998 * 109.46853 * 59.99967 * 1 2 3 31 31 H 1.08996 * 109.47602 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47460 * 59.99485 * 3 2 1 33 33 H 1.09000 * 109.46777 * 299.99786 * 3 2 1 34 34 H 1.09004 * 109.46719 * 59.99983 * 4 3 2 35 35 H 1.08992 * 109.47309 * 299.99833 * 4 3 2 36 36 H 1.09000 * 109.47017 * 149.71427 * 7 6 5 37 37 H 1.09009 * 109.47021 * 29.71734 * 7 6 5 38 38 H 1.09000 * 109.47491 * 59.99625 * 8 7 6 39 39 H 1.09001 * 109.46798 * 300.00154 * 8 7 6 40 40 H 1.08995 * 109.47219 * 59.99867 * 9 8 7 41 41 H 1.08996 * 109.47277 * 299.99318 * 9 8 7 42 42 H 0.97006 * 120.00330 * 180.02562 * 13 12 10 43 43 H 1.09007 * 109.50479 * 297.54844 * 22 21 20 44 44 H 1.08994 * 109.50462 * 57.67233 * 22 21 20 45 45 H 1.09004 * 109.50792 * 296.91072 * 23 22 21 46 46 H 1.08998 * 109.54037 * 176.80542 * 23 22 21 47 47 H 1.08997 * 109.47281 * 300.21841 * 27 25 24 48 48 H 1.09005 * 109.46865 * 60.22002 * 27 25 24 49 49 H 1.09003 * 109.46869 * 180.21348 * 27 25 24 50 50 H 1.09004 * 109.50778 * 302.32434 * 28 21 20 51 51 H 1.08997 * 109.50498 * 62.41260 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 4.1315 2.5228 0.0000 6 6 4.5585 3.2368 1.0852 7 6 4.5047 2.7924 2.5242 8 6 3.1774 3.2329 3.1447 9 6 3.1231 2.7823 4.6059 10 6 1.8160 3.2168 5.2173 11 1 1.0980 3.7638 4.6244 12 6 1.5390 2.9204 6.5350 13 7 0.4007 3.3042 7.0701 14 14 2.7808 1.9737 7.5603 15 1 3.7022 2.9281 8.2276 16 1 2.0671 1.1739 8.5880 17 1 3.5602 1.0663 6.6803 18 7 5.0254 4.3704 0.6440 19 7 4.9180 4.4231 -0.6358 20 6 4.3730 3.3166 -1.0833 21 7 4.0996 3.0097 -2.4068 22 6 5.3243 3.0434 -3.2194 23 6 4.9872 2.6413 -4.6576 24 8 3.9755 3.5146 -5.1668 25 6 2.7685 3.5062 -4.3997 26 1 2.3394 2.5042 -4.4071 27 6 1.7707 4.4946 -5.0065 28 6 3.0830 3.9170 -2.9588 29 1 -0.3633 0.5140 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.6887 1.8464 0.8899 33 1 1.6887 1.8462 -0.8900 34 1 3.8574 0.6434 -0.8892 35 1 3.8568 0.6438 0.8908 36 1 5.3305 3.2430 3.0747 37 1 4.5855 1.7064 2.5723 38 1 2.3516 2.7824 2.5942 39 1 3.0966 4.3189 3.0965 40 1 3.9489 3.2333 5.1561 41 1 3.2041 1.6965 4.6545 42 1 0.2060 3.0960 7.9973 43 1 5.7391 4.0514 -3.2108 44 1 6.0534 2.3456 -2.8077 45 1 4.6227 1.6141 -4.6725 46 1 5.8808 2.7194 -5.2769 47 1 2.2016 5.4958 -5.0004 48 1 1.5471 4.2015 -6.0324 49 1 0.8524 4.4906 -4.4192 50 1 2.1761 3.8569 -2.3570 51 1 3.4616 4.9390 -2.9454 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341590629.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:02:46 Heat of formation + Delta-G solvation = -32.384839 kcal Electronic energy + Delta-G solvation = -30665.186511 eV Core-core repulsion = 26600.424170 eV Total energy + Delta-G solvation = -4064.762341 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -44.23463 -40.79381 -39.11523 -37.26866 -36.78294 -36.02516 -34.39849 -33.89649 -31.83538 -31.03464 -29.81197 -28.81026 -27.39270 -26.86922 -25.44276 -24.78663 -24.16455 -22.63955 -22.20340 -21.50964 -21.25424 -18.95444 -18.63708 -17.99372 -17.73215 -17.25718 -17.16741 -16.84278 -16.49157 -16.34333 -16.18056 -15.83970 -15.77917 -15.57334 -15.44194 -15.00646 -14.74043 -14.37879 -13.96914 -13.75421 -13.51060 -13.43356 -13.25122 -13.05058 -12.92468 -12.81527 -12.80918 -12.65555 -12.49130 -12.35630 -12.21800 -11.92098 -11.79904 -11.76244 -11.62261 -11.50617 -11.35837 -11.30153 -10.82153 -10.79662 -10.74010 -10.15971 -10.05285 -8.28024 -6.32859 0.46726 0.95870 1.40021 1.41206 1.52961 1.59086 2.25887 2.38474 2.71724 2.82193 3.08138 3.27058 3.47860 3.61097 3.70242 3.76207 3.84023 3.93188 4.02575 4.06234 4.07865 4.14963 4.20435 4.24298 4.31173 4.37075 4.43569 4.44192 4.48266 4.56619 4.58108 4.59918 4.72103 4.79487 4.82076 4.85358 4.91038 4.92778 4.99795 5.00390 5.03834 5.22959 5.35184 5.38800 5.47199 5.56727 5.66871 5.93423 6.02733 6.12759 6.28363 6.75120 7.31785 7.52339 8.89073 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.014775 B = 0.002799 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.673552 B =10000.089847 C =10761.904914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.395 6.395 3 C 0.056 3.944 4 C 0.116 3.884 5 N -0.456 5.456 6 C 0.206 3.794 7 C -0.030 4.030 8 C -0.083 4.083 9 C -0.009 4.009 10 C -0.533 4.533 11 H 0.024 0.976 12 C 0.002 3.998 13 N -0.955 5.955 14 Si 0.952 3.048 15 H -0.269 1.269 16 H -0.287 1.287 17 H -0.235 1.235 18 N -0.323 5.323 19 N -0.340 5.340 20 C 0.343 3.657 21 N -0.453 5.453 22 C 0.028 3.972 23 C 0.071 3.929 24 O -0.394 6.394 25 C 0.098 3.902 26 H 0.082 0.918 27 C -0.144 4.144 28 C 0.035 3.965 29 H 0.035 0.965 30 H 0.056 0.944 31 H 0.109 0.891 32 H 0.041 0.959 33 H 0.059 0.941 34 H 0.125 0.875 35 H 0.119 0.881 36 H 0.108 0.892 37 H 0.110 0.890 38 H 0.047 0.953 39 H 0.039 0.961 40 H 0.025 0.975 41 H 0.034 0.966 42 H 0.266 0.734 43 H 0.045 0.955 44 H 0.096 0.904 45 H 0.076 0.924 46 H 0.127 0.873 47 H 0.057 0.943 48 H 0.079 0.921 49 H 0.085 0.915 50 H 0.084 0.916 51 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.885 -8.977 -26.080 28.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.313 6.313 3 C -0.022 4.022 4 C -0.006 4.006 5 N -0.150 5.150 6 C -0.062 4.062 7 C -0.069 4.069 8 C -0.122 4.122 9 C -0.046 4.046 10 C -0.571 4.571 11 H 0.043 0.957 12 C -0.195 4.195 13 N -0.596 5.596 14 Si 0.775 3.225 15 H -0.194 1.194 16 H -0.213 1.213 17 H -0.158 1.158 18 N -0.162 5.162 19 N -0.183 5.183 20 C -0.015 4.015 21 N -0.179 5.179 22 C -0.099 4.099 23 C -0.006 4.006 24 O -0.313 6.313 25 C 0.039 3.961 26 H 0.099 0.901 27 C -0.201 4.201 28 C -0.092 4.092 29 H 0.054 0.946 30 H 0.075 0.925 31 H 0.127 0.873 32 H 0.059 0.941 33 H 0.077 0.923 34 H 0.143 0.857 35 H 0.137 0.863 36 H 0.126 0.874 37 H 0.128 0.872 38 H 0.066 0.934 39 H 0.058 0.942 40 H 0.044 0.956 41 H 0.052 0.948 42 H 0.074 0.926 43 H 0.063 0.937 44 H 0.115 0.885 45 H 0.094 0.906 46 H 0.144 0.856 47 H 0.076 0.924 48 H 0.098 0.902 49 H 0.104 0.896 50 H 0.102 0.898 51 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 7.350 -8.165 -26.142 28.357 hybrid contribution -0.657 -0.077 1.303 1.462 sum 6.693 -8.242 -24.839 27.013 Atomic orbital electron populations 1.22965 0.78884 1.04411 1.00624 1.87743 1.21733 1.26262 1.95584 1.22619 0.92927 0.85836 1.00858 1.21741 0.92113 0.79077 1.07712 1.46292 1.46260 1.16614 1.05802 1.25282 0.98699 0.89625 0.92621 1.20303 1.00240 1.03080 0.83308 1.21253 0.94800 0.99787 0.96338 1.19514 0.95011 0.97147 0.92926 1.21469 1.03086 1.35756 0.96796 0.95720 1.26073 0.97442 0.96660 0.99305 1.70082 1.25993 1.48923 1.14586 0.85628 0.78971 0.79447 0.78446 1.19416 1.21306 1.15758 1.74024 1.21345 1.17735 1.03120 1.74504 1.19946 1.19675 1.04162 1.22470 1.01656 0.88179 0.89150 1.59081 1.12277 1.51684 0.94895 1.22969 0.89872 1.02191 0.94866 1.22820 0.92565 0.94140 0.91044 1.88012 1.24796 1.65976 1.52489 1.22232 0.86037 1.00823 0.86962 0.90054 1.21776 0.97591 0.98364 1.02394 1.22974 0.94466 0.94148 0.97617 0.94601 0.92548 0.87318 0.94070 0.92268 0.85651 0.86319 0.87414 0.87182 0.93395 0.94206 0.95645 0.94781 0.92558 0.93654 0.88543 0.90571 0.85552 0.92382 0.90197 0.89629 0.89775 0.93808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 113.37 1.25 1.74 16 2 O -0.39 -8.69 10.70 -148.98 -1.59 -10.29 16 3 C 0.06 1.22 6.26 71.98 0.45 1.67 16 4 C 0.12 2.30 6.44 86.38 0.56 2.85 16 5 N -0.46 -11.79 2.81 -514.87 -1.45 -13.23 16 6 C 0.21 6.34 7.32 137.64 1.01 7.34 16 7 C -0.03 -0.86 5.58 29.84 0.17 -0.69 16 8 C -0.08 -3.12 5.13 30.59 0.16 -2.96 16 9 C -0.01 -0.38 4.04 29.85 0.12 -0.26 16 10 C -0.53 -30.38 9.66 25.60 0.25 -30.13 16 11 H 0.02 1.57 7.99 -2.91 -0.02 1.55 16 12 C 0.00 0.09 5.47 84.66 0.46 0.55 16 13 N -0.96 -59.94 13.96 21.45 0.30 -59.64 16 14 Si 0.95 42.98 27.47 68.60 1.88 44.87 16 15 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 16 H -0.29 -12.83 7.11 99.48 0.71 -12.13 16 17 H -0.23 -9.39 6.54 99.48 0.65 -8.74 16 18 N -0.32 -11.73 12.18 -49.54 -0.60 -12.33 16 19 N -0.34 -11.62 12.16 -58.00 -0.71 -12.33 16 20 C 0.34 9.34 6.47 260.11 1.68 11.02 16 21 N -0.45 -9.45 4.74 -705.07 -3.35 -12.79 16 22 C 0.03 0.50 5.54 86.31 0.48 0.98 16 23 C 0.07 0.91 7.01 72.01 0.50 1.41 16 24 O -0.39 -6.74 10.47 -148.98 -1.56 -8.30 16 25 C 0.10 1.48 3.43 30.63 0.10 1.59 16 26 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 27 C -0.14 -1.78 9.57 71.98 0.69 -1.09 16 28 C 0.04 0.71 4.87 86.31 0.42 1.13 16 29 H 0.04 0.74 8.14 -2.38 -0.02 0.72 16 30 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.04 1.11 6.84 -2.39 -0.02 1.09 16 33 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.13 2.03 8.14 -2.38 -0.02 2.01 16 35 H 0.12 2.12 7.10 -2.39 -0.02 2.10 16 36 H 0.11 2.97 8.14 -2.39 -0.02 2.96 16 37 H 0.11 2.52 7.17 -2.38 -0.02 2.51 16 38 H 0.05 1.81 6.84 -2.39 -0.02 1.79 16 39 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.03 1.08 7.58 -2.39 -0.02 1.06 16 41 H 0.03 1.40 7.19 -2.39 -0.02 1.38 16 42 H 0.27 15.53 8.31 -92.70 -0.77 14.76 16 43 H 0.04 0.99 8.13 -2.38 -0.02 0.97 16 44 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 45 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 46 H 0.13 1.07 8.14 -2.39 -0.02 1.05 16 47 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 48 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 49 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 50 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 51 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -75.29 410.45 2.07 -73.22 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: 0.84 Total: 15.66 kcal Atomic # 6 Polarization: -13.14 SS G_CDS: 8.30 Total: -4.84 kcal Atomic # 7 Polarization: -104.52 SS G_CDS: -5.80 Total: -110.32 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: -3.15 Total: -18.59 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 1.88 Total: 44.87 kcal Total: -75.29 2.07 -73.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341590629.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.838 kcal (2) G-P(sol) polarization free energy of solvation -75.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds