Wall clock time and date at job start Tue Mar 31 2020 22:02:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42902 * 113.99659 * 2 1 4 4 C 1.53003 * 109.46686 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.46850 * 179.97438 * 4 3 2 6 6 C 1.36731 * 127.13865 * 268.54747 * 5 4 3 7 7 C 1.50700 * 126.34900 * 359.96709 * 6 5 4 8 8 C 1.53004 * 109.47056 * 270.28731 * 7 6 5 9 9 C 1.53002 * 109.47027 * 179.97438 * 8 7 6 10 10 C 1.50701 * 109.46765 * 180.02562 * 9 8 7 11 11 H 1.07997 * 120.00488 * 359.97438 * 10 9 8 12 12 C 1.37878 * 119.99841 * 180.02562 * 10 9 8 13 13 N 1.31512 * 120.00057 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 120.00080 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47497 * 89.99366 * 14 12 10 16 16 H 1.48504 * 109.47315 * 209.99695 * 14 12 10 17 17 H 1.48503 * 109.47122 * 329.99523 * 14 12 10 18 18 N 1.30295 * 107.30794 * 180.22520 * 6 5 4 19 19 N 1.28528 * 110.05267 * 359.78049 * 18 6 5 20 20 C 1.31211 * 109.85743 * 359.97438 * 19 18 6 21 21 N 1.38584 * 126.47207 * 179.97438 * 20 19 18 22 22 C 1.47008 * 111.04103 * 272.15628 * 21 20 19 23 23 C 1.53095 * 109.29736 * 182.34832 * 22 21 20 24 24 O 1.43017 * 109.26186 * 303.17278 * 23 22 21 25 25 C 1.43021 * 113.73358 * 58.66441 * 24 23 22 26 26 H 1.09005 * 109.50094 * 61.26943 * 25 24 23 27 27 C 1.52995 * 109.54099 * 181.37426 * 25 24 23 28 28 C 1.47019 * 110.99822 * 35.81869 * 21 20 19 29 29 H 1.08998 * 109.47443 * 60.00205 * 1 2 3 30 30 H 1.09004 * 109.46951 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47498 * 299.99980 * 1 2 3 32 32 H 1.08994 * 109.47261 * 59.99931 * 3 2 1 33 33 H 1.09000 * 109.46959 * 299.99552 * 3 2 1 34 34 H 1.08994 * 109.47459 * 59.99891 * 4 3 2 35 35 H 1.08998 * 109.47423 * 299.99273 * 4 3 2 36 36 H 1.09006 * 109.47057 * 30.28265 * 7 6 5 37 37 H 1.08994 * 109.47691 * 150.28336 * 7 6 5 38 38 H 1.08997 * 109.46629 * 299.99853 * 8 7 6 39 39 H 1.08998 * 109.46779 * 59.99568 * 8 7 6 40 40 H 1.09002 * 109.46799 * 299.99590 * 9 8 7 41 41 H 1.08995 * 109.47008 * 60.00326 * 9 8 7 42 42 H 0.96997 * 119.99987 * 180.02562 * 13 12 10 43 43 H 1.09005 * 109.46925 * 62.41297 * 22 21 20 44 44 H 1.08999 * 109.54602 * 302.32832 * 22 21 20 45 45 H 1.09004 * 109.50854 * 183.23830 * 23 22 21 46 46 H 1.09004 * 109.50833 * 63.10819 * 23 22 21 47 47 H 1.09005 * 109.47611 * 179.80984 * 27 25 24 48 48 H 1.09003 * 109.47734 * 299.81110 * 27 25 24 49 49 H 1.09004 * 109.47051 * 59.80670 * 27 25 24 50 50 H 1.08993 * 109.50985 * 57.67001 * 28 21 20 51 51 H 1.08998 * 109.50451 * 297.58176 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 4.1312 2.5231 -0.0013 6 6 4.4917 3.2657 -1.0913 7 6 4.3510 2.8588 -2.5355 8 6 5.6181 2.1290 -2.9855 9 6 5.4750 1.7153 -4.4516 10 6 6.7229 0.9959 -4.8946 11 1 7.5368 0.8488 -4.2002 12 6 6.8259 0.5264 -6.1869 13 7 5.8350 0.7059 -7.0327 14 14 8.3724 -0.3660 -6.7359 15 1 8.2202 -1.8214 -6.4832 16 1 8.5883 -0.1355 -8.1870 17 1 9.5382 0.1494 -5.9740 18 7 4.9846 4.3881 -0.6498 19 7 4.9560 4.4069 0.6350 20 6 4.4386 3.2885 1.0857 21 7 4.2466 2.9465 2.4149 22 6 5.4428 2.2978 2.9712 23 6 5.1673 1.8851 4.4194 24 8 4.7766 3.0368 5.1720 25 6 3.6137 3.6924 4.6590 26 1 2.7668 3.0067 4.6878 27 6 3.3028 4.9243 5.5113 28 6 3.8734 4.1234 3.2131 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.6885 1.8464 0.8899 33 1 1.6885 1.8464 -0.8900 34 1 3.8567 0.6439 -0.8908 35 1 3.8574 0.6437 0.8891 36 1 3.4921 2.1964 -2.6443 37 1 4.2052 3.7467 -3.1506 38 1 6.4769 2.7913 -2.8766 39 1 5.7638 1.2410 -2.3703 40 1 4.6162 1.0528 -4.5599 41 1 5.3291 2.6030 -5.0669 42 1 5.9073 0.3753 -7.9417 43 1 6.2800 2.9954 2.9445 44 1 5.6863 1.4144 2.3810 45 1 6.0702 1.4557 4.8536 46 1 4.3656 1.1469 4.4413 47 1 2.4183 5.4251 5.1173 48 1 3.1179 4.6168 6.5406 49 1 4.1506 5.6088 5.4834 50 1 2.9706 4.5725 2.7994 51 1 4.6850 4.8507 3.1904 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001341590630.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:02:50 Heat of formation + Delta-G solvation = -15.004416 kcal Electronic energy + Delta-G solvation = -30326.506296 eV Core-core repulsion = 26262.497627 eV Total energy + Delta-G solvation = -4064.008669 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.02611 -40.02015 -38.30844 -36.30780 -35.48662 -34.54738 -33.22875 -32.45665 -30.19846 -30.07606 -28.74490 -27.09958 -26.61648 -26.05784 -24.13031 -23.53317 -23.31923 -21.66722 -20.70713 -20.53221 -20.09935 -17.70600 -17.05952 -16.85111 -16.48400 -16.36428 -16.27143 -15.87728 -15.60972 -15.29483 -14.99967 -14.86023 -14.67804 -14.38762 -14.08956 -13.92848 -13.47226 -13.08092 -12.71453 -12.66389 -12.42956 -12.36161 -12.08616 -11.94760 -11.84120 -11.72868 -11.59616 -11.56167 -11.42160 -11.04945 -10.88684 -10.84249 -10.64271 -10.54536 -10.20758 -10.08370 -10.03007 -9.79855 -9.59629 -9.31948 -9.13397 -8.56969 -8.37666 -6.02832 -4.05112 1.66250 2.00554 2.87166 3.16106 3.30644 3.35082 3.37247 3.41057 3.69819 4.33814 4.38750 4.43233 4.45962 4.56588 4.60401 4.64959 4.74093 4.79720 4.94812 4.97752 4.99121 5.04739 5.06305 5.12762 5.14523 5.20408 5.28189 5.33475 5.36864 5.38711 5.43474 5.46655 5.51565 5.66393 5.76615 5.79533 5.84428 5.96110 6.05080 6.26083 6.50762 6.56323 6.70696 6.73197 6.77184 6.98763 7.08727 7.61988 7.74635 7.96084 8.38298 8.79008 9.01227 9.59199 11.08446 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.012530 B = 0.002636 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.173797 B =10619.116902 C =11587.674777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.385 6.385 3 C 0.053 3.947 4 C 0.114 3.886 5 N -0.465 5.465 6 C 0.212 3.788 7 C -0.038 4.038 8 C -0.102 4.102 9 C 0.023 3.977 10 C -0.521 4.521 11 H 0.054 0.946 12 C 0.058 3.942 13 N -0.895 5.895 14 Si 0.891 3.109 15 H -0.281 1.281 16 H -0.286 1.286 17 H -0.274 1.274 18 N -0.288 5.288 19 N -0.309 5.309 20 C 0.331 3.669 21 N -0.459 5.459 22 C 0.022 3.978 23 C 0.069 3.931 24 O -0.379 6.379 25 C 0.091 3.909 26 H 0.068 0.932 27 C -0.144 4.144 28 C 0.040 3.960 29 H 0.045 0.955 30 H 0.090 0.910 31 H 0.041 0.959 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.111 0.889 35 H 0.103 0.897 36 H 0.079 0.921 37 H 0.099 0.901 38 H 0.058 0.942 39 H 0.046 0.954 40 H 0.017 0.983 41 H 0.020 0.980 42 H 0.261 0.739 43 H 0.060 0.940 44 H 0.088 0.912 45 H 0.106 0.894 46 H 0.062 0.938 47 H 0.074 0.926 48 H 0.068 0.932 49 H 0.066 0.934 50 H 0.088 0.912 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.230 1.741 24.340 26.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.303 6.303 3 C -0.025 4.025 4 C -0.010 4.010 5 N -0.160 5.160 6 C -0.055 4.055 7 C -0.078 4.078 8 C -0.141 4.141 9 C -0.014 4.014 10 C -0.559 4.559 11 H 0.073 0.927 12 C -0.144 4.144 13 N -0.534 5.534 14 Si 0.719 3.281 15 H -0.207 1.207 16 H -0.212 1.212 17 H -0.199 1.199 18 N -0.128 5.128 19 N -0.153 5.153 20 C -0.026 4.026 21 N -0.184 5.184 22 C -0.105 4.105 23 C -0.008 4.008 24 O -0.298 6.298 25 C 0.032 3.968 26 H 0.086 0.914 27 C -0.202 4.202 28 C -0.088 4.088 29 H 0.063 0.937 30 H 0.108 0.892 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.130 0.870 35 H 0.122 0.878 36 H 0.097 0.903 37 H 0.118 0.882 38 H 0.076 0.924 39 H 0.065 0.935 40 H 0.036 0.964 41 H 0.039 0.961 42 H 0.070 0.930 43 H 0.079 0.921 44 H 0.107 0.893 45 H 0.124 0.876 46 H 0.081 0.919 47 H 0.093 0.907 48 H 0.087 0.913 49 H 0.085 0.915 50 H 0.107 0.893 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.850 2.634 24.358 26.795 hybrid contribution 0.473 -1.249 -0.738 1.525 sum -10.377 1.385 23.620 25.836 Atomic orbital electron populations 1.22777 0.80127 1.03125 1.00210 1.87817 1.20382 1.26551 1.95522 1.22676 0.92712 0.85638 1.01435 1.21559 0.92406 0.80470 1.06519 1.46135 1.47583 1.16165 1.06073 1.25426 0.99149 0.88763 0.92176 1.20427 1.01485 1.02358 0.83544 1.21664 0.94043 0.98012 1.00411 1.19098 0.97283 0.96611 0.88407 1.21204 1.01949 1.36286 0.96454 0.92741 1.25005 0.96372 0.96211 0.96775 1.69953 1.31502 1.46565 1.05383 0.86604 0.83623 0.79996 0.77858 1.20681 1.21175 1.19873 1.74092 1.18867 1.17619 1.02183 1.74567 1.18019 1.18459 1.04234 1.22213 1.02509 0.90159 0.87672 1.58831 1.35003 1.28351 0.96234 1.22955 0.90564 1.00063 0.96960 1.22656 1.01162 0.87989 0.89017 1.88018 1.46117 1.42644 1.53028 1.22206 0.88368 0.95012 0.91166 0.91401 1.21743 1.02369 0.96057 1.00035 1.22813 1.02673 0.90480 0.92814 0.93672 0.89150 0.94019 0.92380 0.92442 0.87039 0.87843 0.90300 0.88220 0.92369 0.93542 0.96443 0.96133 0.92965 0.92124 0.89323 0.87630 0.91933 0.90745 0.91296 0.91469 0.89331 0.91359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.38 -4.19 10.70 -35.23 -0.38 -4.57 16 3 C 0.05 0.56 6.26 37.16 0.23 0.79 16 4 C 0.11 1.30 6.28 -4.04 -0.03 1.28 16 5 N -0.46 -6.50 2.81 -114.09 -0.32 -6.82 16 6 C 0.21 3.48 7.32 -154.02 -1.13 2.35 16 7 C -0.04 -0.63 5.40 -27.88 -0.15 -0.78 16 8 C -0.10 -2.05 5.14 -26.73 -0.14 -2.18 16 9 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 10 C -0.52 -14.53 9.11 -34.44 -0.31 -14.84 16 11 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 12 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 13 N -0.89 -26.48 13.29 55.43 0.74 -25.75 16 14 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 15 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 16 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 17 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 18 N -0.29 -5.36 12.18 32.99 0.40 -4.96 16 19 N -0.31 -5.34 11.62 30.31 0.35 -4.99 16 20 C 0.33 4.73 6.76 -318.88 -2.16 2.57 16 21 N -0.46 -5.16 4.74 -174.21 -0.83 -5.99 16 22 C 0.02 0.22 5.58 -3.72 -0.02 0.20 16 23 C 0.07 0.55 7.01 37.21 0.26 0.81 16 24 O -0.38 -3.65 10.47 -35.23 -0.37 -4.02 16 25 C 0.09 0.75 3.42 -26.69 -0.09 0.66 16 26 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 27 C -0.14 -0.94 9.57 37.16 0.36 -0.58 16 28 C 0.04 0.40 4.61 -3.71 -0.02 0.39 16 29 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.11 1.34 7.80 -51.93 -0.41 0.93 16 35 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 36 H 0.08 1.16 7.89 -51.93 -0.41 0.75 16 37 H 0.10 1.63 8.14 -51.93 -0.42 1.21 16 38 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 39 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 43 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 47 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 49 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 50 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 51 H 0.07 0.80 7.96 -51.93 -0.41 0.39 16 LS Contribution 417.10 15.07 6.29 6.29 Total: -1.00 -33.27 417.10 -10.68 -43.95 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -9.22 Total: -3.70 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: -2.31 Total: -5.99 kcal Atomic # 7 Polarization: -48.84 SS G_CDS: 0.34 Total: -48.50 kcal Atomic # 8 Polarization: -7.84 SS G_CDS: -0.75 Total: -8.59 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -33.27 -10.68 -43.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341590630.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.942 kcal (2) G-P(sol) polarization free energy of solvation -33.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds