Wall clock time and date at job start Tue Mar 31 2020 22:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42902 * 113.99659 * 2 1 4 4 C 1.53003 * 109.46686 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.46850 * 179.97438 * 4 3 2 6 6 C 1.36731 * 127.13865 * 268.54747 * 5 4 3 7 7 C 1.50700 * 126.34900 * 359.96709 * 6 5 4 8 8 C 1.53004 * 109.47056 * 270.28731 * 7 6 5 9 9 C 1.53002 * 109.47027 * 179.97438 * 8 7 6 10 10 C 1.50701 * 109.46765 * 180.02562 * 9 8 7 11 11 H 1.07997 * 120.00488 * 359.97438 * 10 9 8 12 12 C 1.37878 * 119.99841 * 180.02562 * 10 9 8 13 13 N 1.31512 * 120.00057 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 120.00080 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47497 * 89.99366 * 14 12 10 16 16 H 1.48504 * 109.47315 * 209.99695 * 14 12 10 17 17 H 1.48503 * 109.47122 * 329.99523 * 14 12 10 18 18 N 1.30295 * 107.30794 * 180.22520 * 6 5 4 19 19 N 1.28528 * 110.05267 * 359.78049 * 18 6 5 20 20 C 1.31211 * 109.85743 * 359.97438 * 19 18 6 21 21 N 1.38584 * 126.47207 * 179.97438 * 20 19 18 22 22 C 1.47008 * 111.04103 * 272.15628 * 21 20 19 23 23 C 1.53095 * 109.29736 * 182.34832 * 22 21 20 24 24 O 1.43017 * 109.26186 * 303.17278 * 23 22 21 25 25 C 1.43021 * 113.73358 * 58.66441 * 24 23 22 26 26 H 1.09005 * 109.50094 * 61.26943 * 25 24 23 27 27 C 1.52995 * 109.54099 * 181.37426 * 25 24 23 28 28 C 1.47019 * 110.99822 * 35.81869 * 21 20 19 29 29 H 1.08998 * 109.47443 * 60.00205 * 1 2 3 30 30 H 1.09004 * 109.46951 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47498 * 299.99980 * 1 2 3 32 32 H 1.08994 * 109.47261 * 59.99931 * 3 2 1 33 33 H 1.09000 * 109.46959 * 299.99552 * 3 2 1 34 34 H 1.08994 * 109.47459 * 59.99891 * 4 3 2 35 35 H 1.08998 * 109.47423 * 299.99273 * 4 3 2 36 36 H 1.09006 * 109.47057 * 30.28265 * 7 6 5 37 37 H 1.08994 * 109.47691 * 150.28336 * 7 6 5 38 38 H 1.08997 * 109.46629 * 299.99853 * 8 7 6 39 39 H 1.08998 * 109.46779 * 59.99568 * 8 7 6 40 40 H 1.09002 * 109.46799 * 299.99590 * 9 8 7 41 41 H 1.08995 * 109.47008 * 60.00326 * 9 8 7 42 42 H 0.96997 * 119.99987 * 180.02562 * 13 12 10 43 43 H 1.09005 * 109.46925 * 62.41297 * 22 21 20 44 44 H 1.08999 * 109.54602 * 302.32832 * 22 21 20 45 45 H 1.09004 * 109.50854 * 183.23830 * 23 22 21 46 46 H 1.09004 * 109.50833 * 63.10819 * 23 22 21 47 47 H 1.09005 * 109.47611 * 179.80984 * 27 25 24 48 48 H 1.09003 * 109.47734 * 299.81110 * 27 25 24 49 49 H 1.09004 * 109.47051 * 59.80670 * 27 25 24 50 50 H 1.08993 * 109.50985 * 57.67001 * 28 21 20 51 51 H 1.08998 * 109.50451 * 297.58176 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 4.1312 2.5231 -0.0013 6 6 4.4917 3.2657 -1.0913 7 6 4.3510 2.8588 -2.5355 8 6 5.6181 2.1290 -2.9855 9 6 5.4750 1.7153 -4.4516 10 6 6.7229 0.9959 -4.8946 11 1 7.5368 0.8488 -4.2002 12 6 6.8259 0.5264 -6.1869 13 7 5.8350 0.7059 -7.0327 14 14 8.3724 -0.3660 -6.7359 15 1 8.2202 -1.8214 -6.4832 16 1 8.5883 -0.1355 -8.1870 17 1 9.5382 0.1494 -5.9740 18 7 4.9846 4.3881 -0.6498 19 7 4.9560 4.4069 0.6350 20 6 4.4386 3.2885 1.0857 21 7 4.2466 2.9465 2.4149 22 6 5.4428 2.2978 2.9712 23 6 5.1673 1.8851 4.4194 24 8 4.7766 3.0368 5.1720 25 6 3.6137 3.6924 4.6590 26 1 2.7668 3.0067 4.6878 27 6 3.3028 4.9243 5.5113 28 6 3.8734 4.1234 3.2131 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.6885 1.8464 0.8899 33 1 1.6885 1.8464 -0.8900 34 1 3.8567 0.6439 -0.8908 35 1 3.8574 0.6437 0.8891 36 1 3.4921 2.1964 -2.6443 37 1 4.2052 3.7467 -3.1506 38 1 6.4769 2.7913 -2.8766 39 1 5.7638 1.2410 -2.3703 40 1 4.6162 1.0528 -4.5599 41 1 5.3291 2.6030 -5.0669 42 1 5.9073 0.3753 -7.9417 43 1 6.2800 2.9954 2.9445 44 1 5.6863 1.4144 2.3810 45 1 6.0702 1.4557 4.8536 46 1 4.3656 1.1469 4.4413 47 1 2.4183 5.4251 5.1173 48 1 3.1179 4.6168 6.5406 49 1 4.1506 5.6088 5.4834 50 1 2.9706 4.5725 2.7994 51 1 4.6850 4.8507 3.1904 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341590630.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:02:49 Heat of formation + Delta-G solvation = -34.314679 kcal Electronic energy + Delta-G solvation = -30327.343652 eV Core-core repulsion = 26262.497627 eV Total energy + Delta-G solvation = -4064.846025 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -44.23500 -40.79795 -39.10664 -37.26087 -36.78134 -36.01744 -34.36315 -33.87467 -31.59776 -31.02543 -29.74991 -28.51370 -27.37413 -26.93160 -25.69819 -24.69476 -24.07974 -22.78058 -22.17958 -21.63631 -21.25609 -18.73647 -18.38188 -17.97984 -17.70245 -17.33845 -17.13031 -16.76786 -16.55164 -16.40162 -16.17437 -15.90204 -15.79435 -15.56185 -15.41066 -15.01167 -14.51673 -14.19920 -13.90226 -13.74724 -13.48024 -13.32823 -13.20639 -13.03828 -12.83914 -12.76152 -12.72059 -12.66675 -12.59205 -12.43124 -12.33242 -12.20732 -11.90753 -11.64632 -11.57205 -11.44961 -11.32577 -11.24268 -10.85990 -10.77565 -10.54011 -10.41996 -9.75701 -8.19558 -6.29467 0.49797 0.93151 1.40113 1.41188 1.51956 1.59654 2.27252 2.41308 2.72205 2.83239 3.14151 3.26763 3.46560 3.64278 3.67070 3.76419 3.82515 3.90608 4.03052 4.08425 4.10960 4.16187 4.24592 4.28180 4.33074 4.36741 4.44064 4.48351 4.51382 4.54936 4.60219 4.63765 4.72756 4.76933 4.83905 4.87781 4.93870 4.98459 5.02927 5.04533 5.14510 5.26452 5.33348 5.41940 5.51385 5.73264 5.85274 5.95192 6.04415 6.12967 6.25440 6.86224 7.39266 7.54026 8.91892 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.012530 B = 0.002636 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.173797 B =10619.116902 C =11587.674777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.402 6.402 3 C 0.062 3.938 4 C 0.111 3.889 5 N -0.459 5.459 6 C 0.207 3.793 7 C -0.026 4.026 8 C -0.085 4.085 9 C 0.028 3.972 10 C -0.543 4.543 11 H 0.054 0.946 12 C 0.004 3.996 13 N -0.929 5.929 14 Si 0.959 3.041 15 H -0.270 1.270 16 H -0.282 1.282 17 H -0.268 1.268 18 N -0.321 5.321 19 N -0.342 5.342 20 C 0.347 3.653 21 N -0.451 5.451 22 C 0.021 3.979 23 C 0.073 3.927 24 O -0.394 6.394 25 C 0.095 3.905 26 H 0.081 0.919 27 C -0.142 4.142 28 C 0.041 3.959 29 H 0.046 0.954 30 H 0.103 0.897 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.053 0.947 34 H 0.107 0.893 35 H 0.120 0.880 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.043 0.957 39 H 0.053 0.947 40 H 0.005 0.995 41 H -0.002 1.002 42 H 0.264 0.736 43 H 0.041 0.959 44 H 0.095 0.905 45 H 0.125 0.875 46 H 0.078 0.922 47 H 0.088 0.912 48 H 0.078 0.922 49 H 0.057 0.943 50 H 0.090 0.910 51 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.749 0.304 26.136 28.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.320 6.320 3 C -0.016 4.016 4 C -0.011 4.011 5 N -0.153 5.153 6 C -0.062 4.062 7 C -0.065 4.065 8 C -0.124 4.124 9 C -0.009 4.009 10 C -0.581 4.581 11 H 0.073 0.927 12 C -0.194 4.194 13 N -0.569 5.569 14 Si 0.784 3.216 15 H -0.196 1.196 16 H -0.207 1.207 17 H -0.193 1.193 18 N -0.161 5.161 19 N -0.186 5.186 20 C -0.010 4.010 21 N -0.177 5.177 22 C -0.106 4.106 23 C -0.004 4.004 24 O -0.313 6.313 25 C 0.037 3.963 26 H 0.099 0.901 27 C -0.200 4.200 28 C -0.087 4.087 29 H 0.065 0.935 30 H 0.122 0.878 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.071 0.929 34 H 0.125 0.875 35 H 0.138 0.862 36 H 0.117 0.883 37 H 0.116 0.884 38 H 0.062 0.938 39 H 0.071 0.929 40 H 0.024 0.976 41 H 0.016 0.984 42 H 0.073 0.927 43 H 0.059 0.941 44 H 0.113 0.887 45 H 0.143 0.857 46 H 0.096 0.904 47 H 0.107 0.893 48 H 0.096 0.904 49 H 0.076 0.924 50 H 0.108 0.892 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -11.377 1.190 26.173 28.564 hybrid contribution 0.586 -0.818 -1.241 1.598 sum -10.791 0.372 24.932 27.170 Atomic orbital electron populations 1.22981 0.78595 1.04323 1.00979 1.87788 1.22076 1.26523 1.95637 1.22542 0.91826 0.85743 1.01512 1.21744 0.93199 0.79049 1.07104 1.46191 1.47116 1.16712 1.05259 1.25169 0.99684 0.88903 0.92424 1.20195 1.00272 1.02260 0.83809 1.21354 0.95327 0.98254 0.97436 1.18972 0.95815 0.95065 0.91063 1.21639 1.02965 1.36607 0.96901 0.92745 1.25880 0.99628 0.97027 0.96914 1.70066 1.33490 1.47558 1.05794 0.85538 0.79628 0.79034 0.77410 1.19572 1.20723 1.19283 1.74005 1.19933 1.19013 1.03099 1.74504 1.19902 1.20343 1.03847 1.22538 1.00358 0.89214 0.88863 1.59087 1.35284 1.28500 0.94789 1.23055 0.89325 0.99591 0.98626 1.22782 1.02636 0.87728 0.87240 1.88014 1.46667 1.43268 1.53365 1.22292 0.88357 0.95881 0.89791 0.90108 1.21765 1.02622 0.95233 1.00341 1.22880 1.01899 0.89803 0.94083 0.93493 0.87822 0.92664 0.91757 0.92911 0.87496 0.86217 0.88346 0.88388 0.93840 0.92870 0.97647 0.98406 0.92731 0.94083 0.88672 0.85706 0.90424 0.89301 0.90351 0.92378 0.89170 0.93394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 113.37 1.25 1.62 16 2 O -0.40 -7.99 10.70 -148.98 -1.59 -9.59 16 3 C 0.06 1.19 6.26 71.98 0.45 1.64 16 4 C 0.11 2.37 6.28 86.38 0.54 2.92 16 5 N -0.46 -12.45 2.81 -514.86 -1.45 -13.90 16 6 C 0.21 6.78 7.32 137.64 1.01 7.79 16 7 C -0.03 -0.85 5.40 29.85 0.16 -0.68 16 8 C -0.08 -3.42 5.14 30.60 0.16 -3.26 16 9 C 0.03 1.42 4.97 29.85 0.15 1.57 16 10 C -0.54 -30.59 9.11 25.60 0.23 -30.35 16 11 H 0.05 2.99 7.74 -2.91 -0.02 2.97 16 12 C 0.00 0.21 5.46 84.66 0.46 0.67 16 13 N -0.93 -55.52 13.29 21.45 0.28 -55.23 16 14 Si 0.96 44.11 29.54 68.60 2.03 46.14 16 15 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 16 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 17 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 18 N -0.32 -12.14 12.18 -49.54 -0.60 -12.74 16 19 N -0.34 -11.99 11.62 -58.01 -0.67 -12.66 16 20 C 0.35 9.74 6.76 260.11 1.76 11.50 16 21 N -0.45 -9.58 4.74 -705.09 -3.34 -12.93 16 22 C 0.02 0.40 5.58 86.31 0.48 0.88 16 23 C 0.07 0.99 7.01 72.01 0.50 1.49 16 24 O -0.39 -6.81 10.47 -148.98 -1.56 -8.37 16 25 C 0.09 1.39 3.42 30.62 0.10 1.50 16 26 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 27 C -0.14 -1.60 9.57 71.98 0.69 -0.91 16 28 C 0.04 0.79 4.61 86.31 0.40 1.19 16 29 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.10 1.12 8.14 -2.38 -0.02 1.10 16 31 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.11 2.42 7.80 -2.39 -0.02 2.40 16 35 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.10 2.83 7.89 -2.38 -0.02 2.81 16 37 H 0.10 3.26 8.14 -2.39 -0.02 3.24 16 38 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 41 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 42 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 43 H 0.04 0.93 8.14 -2.38 -0.02 0.91 16 44 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.13 1.21 8.14 -2.38 -0.02 1.19 16 46 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 47 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 48 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 49 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 50 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 51 H 0.05 1.14 7.96 -2.39 -0.02 1.12 16 Total: -1.00 -71.91 417.10 2.32 -69.60 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: 0.88 Total: 12.15 kcal Atomic # 6 Polarization: -10.81 SS G_CDS: 8.35 Total: -2.46 kcal Atomic # 7 Polarization: -101.68 SS G_CDS: -5.78 Total: -107.47 kcal Atomic # 8 Polarization: -14.80 SS G_CDS: -3.15 Total: -17.96 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -71.91 2.32 -69.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341590630.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.281 kcal (2) G-P(sol) polarization free energy of solvation -71.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds