Wall clock time and date at job start Tue Mar 31 2020 22:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42905 * 114.00088 * 2 1 4 4 C 1.53002 * 109.47378 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47006 * 174.46512 * 4 3 2 6 6 C 1.36733 * 127.13860 * 85.17653 * 5 4 3 7 7 C 1.50697 * 126.34930 * 359.96324 * 6 5 4 8 8 C 1.52998 * 109.47376 * 270.01619 * 7 6 5 9 9 C 1.50700 * 109.47047 * 179.97438 * 8 7 6 10 10 H 1.07997 * 120.00197 * 0.02562 * 9 8 7 11 11 C 1.37879 * 119.99916 * 180.02562 * 9 8 7 12 12 N 1.31518 * 119.99917 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00063 * 180.02562 * 11 9 8 14 14 H 1.48504 * 109.47239 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47372 * 120.00048 * 13 11 9 16 16 H 1.48503 * 109.47154 * 239.99695 * 13 11 9 17 17 N 1.30301 * 107.30576 * 179.97438 * 6 5 4 18 18 N 1.28531 * 110.05110 * 0.02562 * 17 6 5 19 19 C 1.31218 * 109.85989 * 0.02562 * 18 17 6 20 20 N 1.38580 * 126.47248 * 180.02562 * 19 18 17 21 21 C 1.47021 * 110.99526 * 272.34698 * 20 19 18 22 22 C 1.53109 * 109.25428 * 182.39407 * 21 20 19 23 23 H 1.08995 * 109.50815 * 63.08493 * 22 21 20 24 24 C 1.52998 * 109.53826 * 183.19317 * 22 21 20 25 25 O 1.43018 * 109.25705 * 303.14502 * 22 21 20 26 26 C 1.43014 * 113.73609 * 58.67513 * 25 22 21 27 27 H 1.08996 * 109.51115 * 61.26212 * 26 25 22 28 28 C 1.52999 * 109.50731 * 181.39213 * 26 25 22 29 29 C 1.47017 * 111.00421 * 35.97589 * 20 19 18 30 30 H 1.09000 * 109.47137 * 59.99916 * 1 2 3 31 31 H 1.09001 * 109.46835 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46954 * 299.99761 * 1 2 3 33 33 H 1.09001 * 109.47119 * 59.99796 * 3 2 1 34 34 H 1.09007 * 109.47126 * 300.00270 * 3 2 1 35 35 H 1.08990 * 109.47033 * 54.46091 * 4 3 2 36 36 H 1.08996 * 109.46586 * 294.45992 * 4 3 2 37 37 H 1.09004 * 109.46767 * 30.02153 * 7 6 5 38 38 H 1.08997 * 109.46966 * 150.01480 * 7 6 5 39 39 H 1.08997 * 109.47041 * 300.00343 * 8 7 6 40 40 H 1.09001 * 109.46842 * 59.99614 * 8 7 6 41 41 H 0.96999 * 119.99991 * 180.02562 * 12 11 9 42 42 H 1.09000 * 109.50432 * 302.31774 * 21 20 19 43 43 H 1.08993 * 109.51167 * 62.45616 * 21 20 19 44 44 H 1.09004 * 109.46836 * 179.80050 * 24 22 21 45 45 H 1.08996 * 109.47288 * 299.80511 * 24 22 21 46 46 H 1.09002 * 109.47307 * 59.80095 * 24 22 21 47 47 H 1.08998 * 109.47402 * 179.78227 * 28 26 25 48 48 H 1.08998 * 109.47204 * 299.78596 * 28 26 25 49 49 H 1.09010 * 109.46726 * 59.78576 * 28 26 25 50 50 H 1.08996 * 109.50539 * 297.55176 * 29 20 19 51 51 H 1.09004 * 109.50433 * 57.67612 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 4.1307 2.5167 -0.1339 6 6 4.3911 3.4086 0.8693 7 6 4.1169 3.2069 2.3373 8 6 2.7100 3.7096 2.6672 9 6 2.4357 3.5072 4.1351 10 1 3.1895 3.0648 4.7694 11 6 1.2222 3.8870 4.6684 12 7 0.3040 4.4253 3.8958 13 14 0.8824 3.6368 6.4880 14 1 2.0678 3.0165 7.1323 15 1 0.6025 4.9491 7.1243 16 1 -0.2938 2.7455 6.6540 17 7 4.9201 4.4655 0.3206 18 7 5.0104 4.3033 -0.9513 19 6 4.5395 3.1249 -1.2849 20 7 4.4720 2.5969 -2.5644 21 6 3.2205 2.9870 -3.2300 22 6 3.1602 2.3352 -4.6140 23 1 3.1390 1.2509 -4.5051 24 6 1.8985 2.8001 -5.3440 25 8 4.3152 2.7171 -5.3661 26 6 5.5517 2.3520 -4.7472 27 1 5.6001 1.2682 -4.6421 28 6 6.7179 2.8348 -5.6119 29 6 5.6363 3.0039 -3.3646 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.6886 1.8464 0.8900 34 1 1.6886 1.8465 -0.8900 35 1 3.8502 0.5608 -0.8370 36 1 3.8644 0.7317 0.9346 37 1 4.1897 2.1463 2.5780 38 1 4.8483 3.7635 2.9233 39 1 2.6374 4.7701 2.4263 40 1 1.9787 3.1530 2.0811 41 1 -0.5495 4.6928 4.2710 42 1 2.3716 2.6533 -2.6332 43 1 3.1875 4.0713 -3.3365 44 1 1.8585 2.3381 -6.3305 45 1 1.0187 2.5088 -4.7704 46 1 1.9195 3.8846 -5.4513 47 1 7.6600 2.5597 -5.1378 48 1 6.6571 2.3704 -6.5961 49 1 6.6673 3.9186 -5.7177 50 1 5.6420 4.0885 -3.4732 51 1 6.5508 2.6827 -2.8660 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345381178.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:01:52 Heat of formation + Delta-G solvation = -12.894433 kcal Electronic energy + Delta-G solvation = -31148.241769 eV Core-core repulsion = 27084.324595 eV Total energy + Delta-G solvation = -4063.917174 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.75583 -40.00843 -37.98840 -36.13841 -35.13932 -34.03131 -33.90090 -31.83193 -30.60851 -29.73570 -28.65864 -27.05902 -26.38297 -25.62925 -24.91232 -23.43095 -22.32711 -21.94294 -21.18377 -20.35494 -19.79522 -17.47291 -16.97873 -16.67705 -16.41716 -16.17867 -16.06388 -15.77448 -15.38520 -15.30837 -14.69570 -14.62985 -14.40764 -14.21574 -13.73719 -13.31672 -13.13426 -13.01603 -12.90512 -12.41519 -12.37527 -12.34083 -12.26729 -12.12280 -11.78041 -11.62328 -11.48203 -11.28975 -11.26411 -11.16750 -11.05067 -10.85261 -10.70610 -10.43227 -10.14619 -9.95965 -9.90564 -9.82858 -9.63608 -9.25726 -9.09575 -8.46431 -8.32336 -6.12011 -4.15653 1.91714 2.30504 3.13384 3.24764 3.33011 3.33275 3.36728 3.42557 3.98397 4.36488 4.42094 4.56778 4.65947 4.69082 4.83139 4.87175 4.92327 4.95645 5.05151 5.10989 5.17554 5.24044 5.27034 5.28726 5.30226 5.33701 5.44205 5.45290 5.48949 5.57371 5.61636 5.62461 5.69497 5.71917 5.79356 5.81742 5.84298 5.96524 6.19236 6.28766 6.37258 6.45965 6.58674 6.83749 6.95741 7.03500 7.33074 7.48698 7.60637 7.85390 8.22649 8.90173 9.06207 9.49278 10.99041 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.014613 B = 0.003123 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.587117 B = 8963.326043 C = 9964.848298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.388 6.388 3 C 0.042 3.958 4 C 0.118 3.882 5 N -0.465 5.465 6 C 0.219 3.781 7 C -0.034 4.034 8 C 0.031 3.969 9 C -0.522 4.522 10 H 0.060 0.940 11 C 0.060 3.940 12 N -0.893 5.893 13 Si 0.894 3.106 14 H -0.271 1.271 15 H -0.283 1.283 16 H -0.284 1.284 17 N -0.294 5.294 18 N -0.310 5.310 19 C 0.324 3.676 20 N -0.457 5.457 21 C 0.029 3.971 22 C 0.095 3.905 23 H 0.069 0.931 24 C -0.144 4.144 25 O -0.377 6.377 26 C 0.092 3.908 27 H 0.068 0.932 28 C -0.143 4.143 29 C 0.039 3.961 30 H 0.039 0.961 31 H 0.087 0.913 32 H 0.051 0.949 33 H 0.081 0.919 34 H 0.047 0.953 35 H 0.105 0.895 36 H 0.104 0.896 37 H 0.072 0.928 38 H 0.091 0.909 39 H 0.026 0.974 40 H 0.016 0.984 41 H 0.261 0.739 42 H 0.085 0.915 43 H 0.059 0.941 44 H 0.069 0.931 45 H 0.073 0.927 46 H 0.065 0.935 47 H 0.074 0.926 48 H 0.067 0.933 49 H 0.066 0.934 50 H 0.067 0.933 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.995 -9.460 -18.165 21.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.306 6.306 3 C -0.035 4.035 4 C -0.006 4.006 5 N -0.159 5.159 6 C -0.048 4.048 7 C -0.074 4.074 8 C -0.007 4.007 9 C -0.561 4.561 10 H 0.078 0.922 11 C -0.142 4.142 12 N -0.531 5.531 13 Si 0.722 3.278 14 H -0.196 1.196 15 H -0.209 1.209 16 H -0.210 1.210 17 N -0.133 5.133 18 N -0.154 5.154 19 C -0.032 4.032 20 N -0.182 5.182 21 C -0.098 4.098 22 C 0.037 3.963 23 H 0.087 0.913 24 C -0.202 4.202 25 O -0.297 6.297 26 C 0.033 3.967 27 H 0.086 0.914 28 C -0.201 4.201 29 C -0.088 4.088 30 H 0.058 0.942 31 H 0.105 0.895 32 H 0.069 0.931 33 H 0.099 0.901 34 H 0.066 0.934 35 H 0.123 0.877 36 H 0.123 0.877 37 H 0.090 0.910 38 H 0.110 0.890 39 H 0.044 0.956 40 H 0.034 0.966 41 H 0.071 0.929 42 H 0.104 0.896 43 H 0.078 0.922 44 H 0.088 0.912 45 H 0.092 0.908 46 H 0.084 0.916 47 H 0.092 0.908 48 H 0.086 0.914 49 H 0.085 0.915 50 H 0.085 0.915 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 5.540 -8.616 -18.443 21.097 hybrid contribution -1.211 -0.470 1.346 1.871 sum 4.330 -9.087 -17.096 19.839 Atomic orbital electron populations 1.22766 0.80130 1.02676 1.00698 1.87730 1.20439 1.26805 1.95637 1.22948 0.92505 0.85612 1.02472 1.21489 0.92584 0.80784 1.05696 1.46138 1.47467 1.15828 1.06494 1.25696 0.98274 0.86271 0.94514 1.20511 1.03020 1.02093 0.81791 1.19148 0.87507 0.97173 0.96872 1.21164 1.00179 1.41168 0.93556 0.92170 1.25000 0.96198 0.94946 0.98060 1.69974 1.06154 1.41637 1.35368 0.86504 0.78274 0.77922 0.85140 1.19572 1.20901 1.21027 1.74076 1.18914 1.20461 0.99888 1.74524 1.21398 1.12066 1.07431 1.22151 1.03968 0.90139 0.86987 1.58774 1.04446 1.57472 0.97537 1.23010 0.90934 1.00292 0.95599 1.22122 0.86630 0.98579 0.89006 0.91276 1.21748 0.94839 1.02665 1.00956 1.88002 1.13357 1.81561 1.46740 1.22178 0.85072 0.98667 0.90733 0.91430 1.21732 0.95818 1.02613 0.99907 1.22813 0.92107 1.00687 0.93198 0.94225 0.89489 0.93061 0.90138 0.93442 0.87711 0.87731 0.91001 0.89032 0.95610 0.96608 0.92920 0.89618 0.92228 0.91240 0.90777 0.91571 0.90757 0.91390 0.91529 0.91469 0.89266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 101.05 1.11 1.51 16 2 O -0.39 -5.48 10.70 -35.23 -0.38 -5.86 16 3 C 0.04 0.62 6.26 37.16 0.23 0.86 16 4 C 0.12 1.65 6.35 -4.04 -0.03 1.63 16 5 N -0.46 -7.79 2.81 -114.09 -0.32 -8.11 16 6 C 0.22 4.29 7.32 -154.02 -1.13 3.16 16 7 C -0.03 -0.68 5.53 -27.89 -0.15 -0.84 16 8 C 0.03 0.76 4.96 -27.88 -0.14 0.62 16 9 C -0.52 -13.92 9.11 -34.44 -0.31 -14.23 16 10 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 11 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 12 N -0.89 -25.75 13.29 55.43 0.74 -25.02 16 13 Si 0.89 20.85 29.54 -169.99 -5.02 15.83 16 14 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 15 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 16 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 17 N -0.29 -6.29 12.18 32.99 0.40 -5.89 16 18 N -0.31 -6.12 11.63 30.31 0.35 -5.77 16 19 C 0.32 5.43 6.76 -318.88 -2.15 3.28 16 20 N -0.46 -6.16 4.72 -174.19 -0.82 -6.98 16 21 C 0.03 0.36 4.87 -3.70 -0.02 0.34 16 22 C 0.09 0.96 3.42 -26.68 -0.09 0.87 16 23 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 24 C -0.14 -1.20 9.57 37.16 0.36 -0.85 16 25 O -0.38 -4.21 10.11 -35.23 -0.36 -4.57 16 26 C 0.09 0.90 3.43 -26.68 -0.09 0.81 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 28 C -0.14 -1.10 9.57 37.16 0.36 -0.75 16 29 C 0.04 0.47 4.61 -3.71 -0.02 0.46 16 30 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.08 1.44 5.85 -51.93 -0.30 1.14 16 34 H 0.05 0.68 6.78 -51.92 -0.35 0.33 16 35 H 0.10 1.30 8.12 -51.93 -0.42 0.88 16 36 H 0.10 1.39 7.40 -51.93 -0.38 1.01 16 37 H 0.07 1.29 7.38 -51.93 -0.38 0.90 16 38 H 0.09 1.81 8.14 -51.93 -0.42 1.39 16 39 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.02 0.40 5.85 -51.93 -0.30 0.10 16 41 H 0.26 7.12 8.31 -40.82 -0.34 6.79 16 42 H 0.09 1.06 6.77 -51.93 -0.35 0.71 16 43 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 46 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 49 H 0.07 0.55 8.14 -51.92 -0.42 0.12 16 50 H 0.07 0.91 7.96 -51.93 -0.41 0.50 16 51 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 408.79 15.07 6.16 6.16 Total: -1.00 -31.85 408.79 -10.21 -42.06 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -8.80 Total: -0.28 kcal Atomic # 6 Polarization: 0.59 SS G_CDS: -2.17 Total: -1.59 kcal Atomic # 7 Polarization: -52.11 SS G_CDS: 0.35 Total: -51.76 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: -0.73 Total: -10.43 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -31.85 -10.21 -42.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345381178.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.167 kcal (2) G-P(sol) polarization free energy of solvation -31.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds