Wall clock time and date at job start Tue Mar 31 2020 22:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42905 * 114.00088 * 2 1 4 4 C 1.53002 * 109.47378 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47006 * 174.46512 * 4 3 2 6 6 C 1.36733 * 127.13860 * 85.17653 * 5 4 3 7 7 C 1.50697 * 126.34930 * 359.96324 * 6 5 4 8 8 C 1.52998 * 109.47376 * 270.01619 * 7 6 5 9 9 C 1.50700 * 109.47047 * 179.97438 * 8 7 6 10 10 H 1.07997 * 120.00197 * 0.02562 * 9 8 7 11 11 C 1.37879 * 119.99916 * 180.02562 * 9 8 7 12 12 N 1.31518 * 119.99917 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00063 * 180.02562 * 11 9 8 14 14 H 1.48504 * 109.47239 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47372 * 120.00048 * 13 11 9 16 16 H 1.48503 * 109.47154 * 239.99695 * 13 11 9 17 17 N 1.30301 * 107.30576 * 179.97438 * 6 5 4 18 18 N 1.28531 * 110.05110 * 0.02562 * 17 6 5 19 19 C 1.31218 * 109.85989 * 0.02562 * 18 17 6 20 20 N 1.38580 * 126.47248 * 180.02562 * 19 18 17 21 21 C 1.47021 * 110.99526 * 272.34698 * 20 19 18 22 22 C 1.53109 * 109.25428 * 182.39407 * 21 20 19 23 23 H 1.08995 * 109.50815 * 63.08493 * 22 21 20 24 24 C 1.52998 * 109.53826 * 183.19317 * 22 21 20 25 25 O 1.43018 * 109.25705 * 303.14502 * 22 21 20 26 26 C 1.43014 * 113.73609 * 58.67513 * 25 22 21 27 27 H 1.08996 * 109.51115 * 61.26212 * 26 25 22 28 28 C 1.52999 * 109.50731 * 181.39213 * 26 25 22 29 29 C 1.47017 * 111.00421 * 35.97589 * 20 19 18 30 30 H 1.09000 * 109.47137 * 59.99916 * 1 2 3 31 31 H 1.09001 * 109.46835 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46954 * 299.99761 * 1 2 3 33 33 H 1.09001 * 109.47119 * 59.99796 * 3 2 1 34 34 H 1.09007 * 109.47126 * 300.00270 * 3 2 1 35 35 H 1.08990 * 109.47033 * 54.46091 * 4 3 2 36 36 H 1.08996 * 109.46586 * 294.45992 * 4 3 2 37 37 H 1.09004 * 109.46767 * 30.02153 * 7 6 5 38 38 H 1.08997 * 109.46966 * 150.01480 * 7 6 5 39 39 H 1.08997 * 109.47041 * 300.00343 * 8 7 6 40 40 H 1.09001 * 109.46842 * 59.99614 * 8 7 6 41 41 H 0.96999 * 119.99991 * 180.02562 * 12 11 9 42 42 H 1.09000 * 109.50432 * 302.31774 * 21 20 19 43 43 H 1.08993 * 109.51167 * 62.45616 * 21 20 19 44 44 H 1.09004 * 109.46836 * 179.80050 * 24 22 21 45 45 H 1.08996 * 109.47288 * 299.80511 * 24 22 21 46 46 H 1.09002 * 109.47307 * 59.80095 * 24 22 21 47 47 H 1.08998 * 109.47402 * 179.78227 * 28 26 25 48 48 H 1.08998 * 109.47204 * 299.78596 * 28 26 25 49 49 H 1.09010 * 109.46726 * 59.78576 * 28 26 25 50 50 H 1.08996 * 109.50539 * 297.55176 * 29 20 19 51 51 H 1.09004 * 109.50433 * 57.67612 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 4.1307 2.5167 -0.1339 6 6 4.3911 3.4086 0.8693 7 6 4.1169 3.2069 2.3373 8 6 2.7100 3.7096 2.6672 9 6 2.4357 3.5072 4.1351 10 1 3.1895 3.0648 4.7694 11 6 1.2222 3.8870 4.6684 12 7 0.3040 4.4253 3.8958 13 14 0.8824 3.6368 6.4880 14 1 2.0678 3.0165 7.1323 15 1 0.6025 4.9491 7.1243 16 1 -0.2938 2.7455 6.6540 17 7 4.9201 4.4655 0.3206 18 7 5.0104 4.3033 -0.9513 19 6 4.5395 3.1249 -1.2849 20 7 4.4720 2.5969 -2.5644 21 6 3.2205 2.9870 -3.2300 22 6 3.1602 2.3352 -4.6140 23 1 3.1390 1.2509 -4.5051 24 6 1.8985 2.8001 -5.3440 25 8 4.3152 2.7171 -5.3661 26 6 5.5517 2.3520 -4.7472 27 1 5.6001 1.2682 -4.6421 28 6 6.7179 2.8348 -5.6119 29 6 5.6363 3.0039 -3.3646 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.6886 1.8464 0.8900 34 1 1.6886 1.8465 -0.8900 35 1 3.8502 0.5608 -0.8370 36 1 3.8644 0.7317 0.9346 37 1 4.1897 2.1463 2.5780 38 1 4.8483 3.7635 2.9233 39 1 2.6374 4.7701 2.4263 40 1 1.9787 3.1530 2.0811 41 1 -0.5495 4.6928 4.2710 42 1 2.3716 2.6533 -2.6332 43 1 3.1875 4.0713 -3.3365 44 1 1.8585 2.3381 -6.3305 45 1 1.0187 2.5088 -4.7704 46 1 1.9195 3.8846 -5.4513 47 1 7.6600 2.5597 -5.1378 48 1 6.6571 2.3704 -6.5961 49 1 6.6673 3.9186 -5.7177 50 1 5.6420 4.0885 -3.4732 51 1 6.5508 2.6827 -2.8660 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345381178.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:01:51 Heat of formation + Delta-G solvation = -31.428875 kcal Electronic energy + Delta-G solvation = -31149.045482 eV Core-core repulsion = 27084.324595 eV Total energy + Delta-G solvation = -4064.720887 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -44.19371 -40.94992 -39.12499 -37.22968 -36.57378 -35.70036 -34.79989 -33.65690 -31.53481 -30.98168 -30.13949 -27.97343 -27.51382 -27.18537 -26.15443 -24.67120 -23.85498 -23.01953 -22.37062 -21.48836 -21.21821 -18.85429 -18.36069 -17.97619 -17.71822 -17.31308 -17.22587 -16.91722 -16.55943 -16.38729 -16.31119 -15.83755 -15.67946 -15.27792 -14.98401 -14.85239 -14.45372 -14.22215 -13.96956 -13.56514 -13.46301 -13.33301 -13.07989 -13.03338 -12.93760 -12.90045 -12.79175 -12.76817 -12.62516 -12.48018 -12.37119 -12.03643 -12.01651 -11.79802 -11.76489 -11.59818 -11.33928 -11.26956 -10.84704 -10.78073 -10.54973 -10.38850 -9.74626 -8.21774 -6.32808 0.52000 0.99962 1.41196 1.43147 1.55174 1.63545 2.25016 2.40627 2.59593 2.82781 3.12946 3.35456 3.51445 3.56272 3.63804 3.75936 3.83713 3.87566 3.96036 4.04460 4.07867 4.13348 4.26339 4.26420 4.33840 4.39027 4.46314 4.48973 4.52687 4.60305 4.63248 4.67569 4.69560 4.76087 4.79430 4.87985 4.92685 4.94375 4.96616 5.06416 5.18995 5.28995 5.34747 5.42675 5.46007 5.58068 5.77763 5.91836 6.02866 6.15385 6.15965 6.82355 7.36812 7.57576 8.90213 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.014613 B = 0.003123 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.587117 B = 8963.326043 C = 9964.848298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.391 6.391 3 C 0.053 3.947 4 C 0.118 3.882 5 N -0.460 5.460 6 C 0.209 3.791 7 C -0.019 4.019 8 C 0.041 3.959 9 C -0.536 4.536 10 H 0.071 0.929 11 C 0.004 3.996 12 N -0.932 5.932 13 Si 0.963 3.037 14 H -0.257 1.257 15 H -0.284 1.284 16 H -0.278 1.278 17 N -0.327 5.327 18 N -0.342 5.342 19 C 0.342 3.658 20 N -0.448 5.448 21 C 0.030 3.970 22 C 0.099 3.901 23 H 0.084 0.916 24 C -0.142 4.142 25 O -0.388 6.388 26 C 0.095 3.905 27 H 0.082 0.918 28 C -0.140 4.140 29 C 0.039 3.961 30 H 0.053 0.947 31 H 0.115 0.885 32 H 0.031 0.969 33 H 0.044 0.956 34 H 0.050 0.950 35 H 0.130 0.870 36 H 0.115 0.885 37 H 0.096 0.904 38 H 0.092 0.908 39 H -0.017 1.017 40 H 0.004 0.996 41 H 0.263 0.737 42 H 0.085 0.915 43 H 0.038 0.962 44 H 0.082 0.918 45 H 0.085 0.915 46 H 0.056 0.944 47 H 0.089 0.911 48 H 0.079 0.921 49 H 0.057 0.943 50 H 0.046 0.954 51 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.355 -12.039 -18.908 23.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.309 6.309 3 C -0.025 4.025 4 C -0.004 4.004 5 N -0.154 5.154 6 C -0.059 4.059 7 C -0.059 4.059 8 C 0.003 3.997 9 C -0.574 4.574 10 H 0.089 0.911 11 C -0.194 4.194 12 N -0.572 5.572 13 Si 0.788 3.212 14 H -0.181 1.181 15 H -0.210 1.210 16 H -0.204 1.204 17 N -0.167 5.167 18 N -0.186 5.186 19 C -0.015 4.015 20 N -0.174 5.174 21 C -0.097 4.097 22 C 0.041 3.959 23 H 0.102 0.898 24 C -0.199 4.199 25 O -0.308 6.308 26 C 0.037 3.963 27 H 0.100 0.900 28 C -0.197 4.197 29 C -0.088 4.088 30 H 0.072 0.928 31 H 0.133 0.867 32 H 0.050 0.950 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.148 0.852 36 H 0.133 0.867 37 H 0.115 0.885 38 H 0.110 0.890 39 H 0.001 0.999 40 H 0.022 0.978 41 H 0.071 0.929 42 H 0.104 0.896 43 H 0.056 0.944 44 H 0.101 0.899 45 H 0.104 0.896 46 H 0.075 0.925 47 H 0.108 0.892 48 H 0.098 0.902 49 H 0.076 0.924 50 H 0.065 0.935 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.912 -11.210 -19.195 23.001 hybrid contribution -1.358 0.319 1.478 2.033 sum 4.553 -10.892 -17.716 21.289 Atomic orbital electron populations 1.22965 0.78939 1.04457 1.00445 1.87721 1.21709 1.25917 1.95568 1.22708 0.93127 0.85858 1.00792 1.21710 0.91834 0.79534 1.07363 1.46211 1.47014 1.16375 1.05776 1.25445 0.99013 0.86762 0.94706 1.20236 0.99956 1.03303 0.82408 1.18923 0.90191 0.94432 0.96122 1.21593 1.00461 1.40735 0.94611 0.91078 1.25918 0.96084 0.94631 1.02788 1.70111 1.06697 1.42863 1.37527 0.85417 0.78581 0.77772 0.79413 1.18096 1.20982 1.20398 1.73981 1.20074 1.21683 1.00915 1.74455 1.23405 1.13833 1.06862 1.22529 1.01590 0.89208 0.88206 1.59049 1.05549 1.56494 0.96279 1.23090 0.90255 0.99299 0.97093 1.22210 0.87140 0.99057 0.87449 0.89824 1.21768 0.94363 1.02164 1.01651 1.88011 1.13948 1.81867 1.46969 1.22300 0.85343 0.99210 0.89415 0.89980 1.21752 0.95604 1.02093 1.00262 1.22926 0.91637 0.99774 0.94471 0.92806 0.86705 0.95025 0.93803 0.93168 0.85243 0.86679 0.88521 0.88977 0.99901 0.97794 0.92853 0.89639 0.94368 0.89901 0.89584 0.92506 0.89183 0.90213 0.92428 0.93508 0.88878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 11.01 113.37 1.25 1.87 16 2 O -0.39 -10.46 10.70 -148.98 -1.59 -12.06 16 3 C 0.05 1.55 6.26 71.98 0.45 2.00 16 4 C 0.12 3.14 6.35 86.38 0.55 3.68 16 5 N -0.46 -15.29 2.81 -514.87 -1.45 -16.74 16 6 C 0.21 8.32 7.32 137.64 1.01 9.33 16 7 C -0.02 -0.78 5.53 29.85 0.16 -0.62 16 8 C 0.04 2.11 4.96 29.85 0.15 2.26 16 9 C -0.54 -28.85 9.11 25.60 0.23 -28.61 16 10 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16 11 C 0.00 0.22 5.46 84.65 0.46 0.68 16 12 N -0.93 -55.17 13.29 21.45 0.28 -54.88 16 13 Si 0.96 42.75 29.54 68.60 2.03 44.78 16 14 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 15 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 16 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 17 N -0.33 -14.46 12.18 -49.54 -0.60 -15.07 16 18 N -0.34 -13.85 11.63 -58.01 -0.67 -14.52 16 19 C 0.34 11.45 6.76 260.11 1.76 13.21 16 20 N -0.45 -11.66 4.72 -705.03 -3.33 -14.99 16 21 C 0.03 0.72 4.87 86.32 0.42 1.14 16 22 C 0.10 1.83 3.42 30.63 0.10 1.94 16 23 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 24 C -0.14 -2.11 9.57 71.98 0.69 -1.42 16 25 O -0.39 -7.96 10.11 -148.98 -1.51 -9.47 16 26 C 0.10 1.68 3.43 30.63 0.10 1.78 16 27 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 28 C -0.14 -1.87 9.57 71.98 0.69 -1.18 16 29 C 0.04 0.91 4.61 86.31 0.40 1.30 16 30 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.04 1.63 5.85 -2.39 -0.01 1.61 16 34 H 0.05 1.42 6.78 -2.38 -0.02 1.41 16 35 H 0.13 2.85 8.12 -2.39 -0.02 2.83 16 36 H 0.12 2.86 7.40 -2.39 -0.02 2.84 16 37 H 0.10 3.37 7.38 -2.38 -0.02 3.36 16 38 H 0.09 3.68 8.14 -2.39 -0.02 3.66 16 39 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 40 H 0.00 0.21 5.85 -2.39 -0.01 0.19 16 41 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 42 H 0.09 2.05 6.77 -2.39 -0.02 2.03 16 43 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 45 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 46 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 47 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 48 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 49 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 50 H 0.05 1.28 7.96 -2.39 -0.02 1.27 16 51 H 0.09 2.07 8.14 -2.38 -0.02 2.05 16 Total: -1.00 -70.61 408.79 2.49 -68.12 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: 0.90 Total: 17.45 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: 8.43 Total: 7.37 kcal Atomic # 7 Polarization: -110.43 SS G_CDS: -5.77 Total: -116.20 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: -3.10 Total: -21.53 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -70.61 2.49 -68.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345381178.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.696 kcal (2) G-P(sol) polarization free energy of solvation -70.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds