Wall clock time and date at job start Tue Mar 31 2020 22:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50698 * 119.99842 * 2 1 4 4 C 1.50707 * 120.00113 * 179.97438 * 2 1 3 5 5 N 1.46498 * 109.46939 * 95.27432 * 4 2 1 6 6 C 1.36456 * 127.13598 * 89.73071 * 5 4 2 7 7 N 1.38589 * 126.47047 * 0.02610 * 6 5 4 8 8 C 1.46901 * 110.99926 * 79.06564 * 7 6 5 9 9 C 1.46896 * 110.99843 * 203.01855 * 7 6 5 10 10 H 1.09004 * 109.47348 * 300.00277 * 9 7 6 11 11 C 1.53007 * 109.46879 * 59.99904 * 9 7 6 12 12 C 1.50700 * 109.47368 * 179.97438 * 9 7 6 13 13 H 1.07997 * 119.99396 * 359.97438 * 12 9 7 14 14 C 1.37875 * 120.00123 * 180.02562 * 12 9 7 15 15 N 1.31504 * 120.00226 * 359.97438 * 14 12 9 16 16 Si 1.86806 * 119.99549 * 179.97438 * 14 12 9 17 17 H 1.48493 * 109.47267 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.46880 * 119.99871 * 16 14 12 19 19 H 1.48496 * 109.46975 * 239.99655 * 16 14 12 20 20 N 1.31213 * 107.05285 * 179.87304 * 6 5 4 21 21 N 1.28520 * 109.86424 * 0.40791 * 20 6 5 22 22 C 1.30300 * 110.05167 * 359.74481 * 21 20 6 23 23 C 1.50698 * 126.34783 * 179.97438 * 22 21 20 24 24 C 1.52995 * 109.46848 * 271.85109 * 23 22 21 25 25 O 1.42900 * 109.47347 * 151.84832 * 23 22 21 26 26 C 1.53001 * 109.47379 * 31.84625 * 23 22 21 27 27 O 1.42904 * 109.47435 * 185.00090 * 26 23 22 28 28 C 1.42897 * 114.00063 * 179.97438 * 27 26 23 29 29 H 1.07998 * 120.00231 * 354.05929 * 1 2 3 30 30 H 1.08004 * 119.99788 * 173.77863 * 1 2 3 31 31 H 1.08999 * 109.47421 * 94.16417 * 3 2 1 32 32 H 1.09008 * 109.47071 * 214.15532 * 3 2 1 33 33 H 1.08999 * 109.47236 * 334.15585 * 3 2 1 34 34 H 1.08996 * 109.47274 * 215.27351 * 4 2 1 35 35 H 1.09000 * 109.47134 * 335.28160 * 4 2 1 36 36 H 1.09004 * 109.47068 * 67.87735 * 8 7 6 37 37 H 1.08998 * 109.47066 * 187.87492 * 8 7 6 38 38 H 1.08995 * 109.47541 * 307.87819 * 8 7 6 39 39 H 1.08995 * 109.46922 * 60.00226 * 11 9 7 40 40 H 1.08999 * 109.46717 * 179.97438 * 11 9 7 41 41 H 1.08995 * 109.47241 * 299.99944 * 11 9 7 42 42 H 0.97001 * 120.00311 * 180.02562 * 15 14 12 43 43 H 1.09004 * 109.47841 * 65.63967 * 24 23 22 44 44 H 1.09006 * 109.47135 * 185.63896 * 24 23 22 45 45 H 1.09003 * 109.47346 * 305.63631 * 24 23 22 46 46 H 0.96694 * 113.99911 * 302.59197 * 25 23 22 47 47 H 1.09003 * 109.47443 * 305.00733 * 26 23 22 48 48 H 1.09007 * 109.46978 * 65.00193 * 26 23 22 49 49 H 1.08993 * 109.46965 * 179.97438 * 28 27 26 50 50 H 1.08998 * 109.47192 * 300.00295 * 28 27 26 51 51 H 1.09004 * 109.46986 * 60.00072 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.0636 -1.3051 0.0006 5 7 2.4177 -1.6651 -1.3746 6 6 3.5526 -1.3216 -2.0499 7 7 4.6020 -0.5587 -1.5627 8 6 5.4815 -1.3615 -0.7025 9 6 5.3589 0.0574 -2.6606 10 1 5.7638 -0.7226 -3.3054 11 6 4.4314 0.9618 -3.4748 12 6 6.4888 0.8777 -2.0934 13 1 6.6301 0.9358 -1.0243 14 6 7.3414 1.5547 -2.9394 15 7 7.1690 1.4844 -4.2412 16 14 8.7415 2.5721 -2.2362 17 1 8.7189 2.4874 -0.7539 18 1 10.0360 2.0487 -2.7418 19 1 8.5829 3.9881 -2.6542 20 7 3.4641 -1.8529 -3.2464 21 7 2.3543 -2.4909 -3.3599 22 6 1.6768 -2.4099 -2.2499 23 6 0.3267 -3.0229 -1.9807 24 6 -0.7710 -2.0479 -2.4112 25 8 0.1984 -3.2984 -0.5844 26 6 0.1909 -4.3253 -2.7721 27 8 -1.1298 -4.8462 -2.6093 28 6 -1.3634 -6.0681 -3.3124 29 1 -0.5400 0.9302 0.0968 30 1 -0.5400 -0.9299 -0.1014 31 1 2.3098 1.5825 1.0249 32 1 2.9817 1.1946 -0.5770 33 1 1.4441 2.0822 -0.4480 34 1 2.9718 -1.2001 0.5940 35 1 1.4368 -2.0864 0.4307 36 1 5.9987 -2.1070 -1.3065 37 1 6.2131 -0.7112 -0.2231 38 1 4.8853 -1.8621 0.0604 39 1 4.0267 1.7418 -2.8300 40 1 4.9932 1.4193 -4.2891 41 1 3.6140 0.3689 -3.8850 42 1 7.7690 1.9604 -4.8364 43 1 -0.7359 -1.9154 -3.4926 44 1 -1.7442 -2.4473 -2.1256 45 1 -0.6152 -1.0863 -1.9221 46 1 0.8867 -3.8798 -0.2334 47 1 0.3768 -4.1298 -3.8283 48 1 0.9158 -5.0514 -2.4040 49 1 -2.3874 -6.3978 -3.1375 50 1 -1.2099 -5.9083 -4.3796 51 1 -0.6707 -6.8305 -2.9559 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001356607577.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:42 Heat of formation + Delta-G solvation = 26.861392 kcal Electronic energy + Delta-G solvation = -32122.394005 eV Core-core repulsion = 28060.200773 eV Total energy + Delta-G solvation = -4062.193232 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.68205 -38.96034 -37.22336 -37.07762 -36.23263 -33.31268 -32.75569 -32.31735 -29.30972 -28.93074 -27.78301 -27.32934 -26.64072 -25.95358 -25.29109 -24.35142 -22.88689 -21.67675 -20.50916 -19.57016 -18.72819 -17.62848 -16.68264 -16.45458 -16.33369 -15.95864 -15.81997 -15.62060 -15.01191 -14.70533 -14.59149 -14.38178 -14.06873 -13.77251 -13.55267 -13.30107 -12.94165 -12.57553 -12.52832 -12.45261 -12.19161 -12.06797 -11.93725 -11.74834 -11.65859 -11.27663 -11.23692 -11.17297 -11.10623 -10.95382 -10.74492 -10.34757 -10.32943 -10.22030 -10.09804 -9.97510 -9.86265 -9.71840 -9.24975 -9.08468 -8.67476 -8.49580 -7.54291 -6.07392 -4.14859 1.87571 2.14947 2.75873 3.25422 3.26435 3.33626 3.36047 3.51710 3.85532 4.29458 4.36004 4.59900 4.66563 4.72893 4.76261 4.81027 5.13377 5.15669 5.23789 5.26695 5.39051 5.42399 5.44923 5.47284 5.60266 5.63071 5.73920 5.77260 5.83122 5.87565 5.99928 6.04261 6.10957 6.16475 6.27932 6.39573 6.45688 6.61217 6.78943 6.89116 6.90233 6.93736 7.08074 7.16763 7.24313 7.40321 7.65458 7.71601 7.92800 8.21030 8.41713 8.87480 9.22641 9.50115 10.99086 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.017483 B = 0.003432 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.183307 B = 8157.234644 C = 8946.554479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.135 4.135 3 C -0.128 4.128 4 C 0.139 3.861 5 N -0.462 5.462 6 C 0.390 3.610 7 N -0.461 5.461 8 C 0.044 3.956 9 C 0.229 3.771 10 H 0.025 0.975 11 C -0.132 4.132 12 C -0.515 4.515 13 H 0.065 0.935 14 C 0.064 3.936 15 N -0.884 5.884 16 Si 0.899 3.101 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 N -0.314 5.314 21 N -0.275 5.275 22 C 0.113 3.887 23 C 0.242 3.758 24 C -0.139 4.139 25 O -0.542 6.542 26 C 0.049 3.951 27 O -0.380 6.380 28 C 0.032 3.968 29 H 0.099 0.901 30 H 0.112 0.888 31 H 0.064 0.936 32 H 0.091 0.909 33 H 0.057 0.943 34 H 0.097 0.903 35 H 0.111 0.889 36 H 0.033 0.967 37 H 0.093 0.907 38 H 0.042 0.958 39 H 0.026 0.974 40 H 0.089 0.911 41 H 0.017 0.983 42 H 0.262 0.738 43 H 0.075 0.925 44 H 0.081 0.919 45 H 0.072 0.928 46 H 0.377 0.623 47 H 0.076 0.924 48 H 0.053 0.947 49 H 0.086 0.914 50 H 0.043 0.957 51 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.194 -10.064 8.559 20.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.136 4.136 3 C -0.184 4.184 4 C 0.017 3.983 5 N -0.156 5.156 6 C 0.035 3.965 7 N -0.186 5.186 8 C -0.103 4.103 9 C 0.125 3.875 10 H 0.042 0.958 11 C -0.190 4.190 12 C -0.553 4.553 13 H 0.083 0.917 14 C -0.139 4.139 15 N -0.522 5.522 16 Si 0.727 3.273 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.210 1.210 20 N -0.159 5.159 21 N -0.117 5.117 22 C -0.155 4.155 23 C 0.198 3.802 24 C -0.197 4.197 25 O -0.347 6.347 26 C -0.029 4.029 27 O -0.299 6.299 28 C -0.065 4.065 29 H 0.117 0.883 30 H 0.130 0.870 31 H 0.083 0.917 32 H 0.110 0.890 33 H 0.076 0.924 34 H 0.116 0.884 35 H 0.129 0.871 36 H 0.052 0.948 37 H 0.112 0.888 38 H 0.061 0.939 39 H 0.045 0.955 40 H 0.108 0.892 41 H 0.036 0.964 42 H 0.072 0.928 43 H 0.094 0.906 44 H 0.100 0.900 45 H 0.090 0.910 46 H 0.225 0.775 47 H 0.095 0.905 48 H 0.072 0.928 49 H 0.104 0.896 50 H 0.061 0.939 51 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -15.545 -9.507 7.330 19.641 hybrid contribution 1.518 0.016 1.000 1.818 sum -14.027 -9.491 8.331 18.874 Atomic orbital electron populations 1.24025 0.95332 1.02669 0.99821 1.21863 0.95385 0.95497 1.00846 1.20974 1.01829 0.93301 1.02321 1.21140 1.01241 0.96163 0.79799 1.46233 1.15161 1.40806 1.13447 1.23130 0.89728 0.95005 0.88631 1.59233 1.09428 1.25796 1.24168 1.22273 0.95936 0.96632 0.95454 1.19359 0.89989 0.92909 0.85213 0.95751 1.21810 0.97696 0.98596 1.00922 1.21081 1.11007 1.29860 0.93393 0.91668 1.24896 0.97732 0.96454 0.94781 1.69922 1.37702 1.42490 1.02047 0.86434 0.81830 0.79942 0.79137 1.19729 1.21039 1.20976 1.74813 1.12545 1.12623 1.15886 1.73912 1.01329 1.17415 1.19032 1.24841 0.98502 1.02934 0.89198 1.19098 0.86998 0.92821 0.81277 1.21902 0.97334 0.98307 1.02135 1.86593 1.55068 1.70735 1.22326 1.23002 0.84559 0.94216 1.01088 1.87869 1.30143 1.39672 1.72181 1.22748 1.01711 0.86035 0.95990 0.88294 0.86981 0.91733 0.89017 0.92370 0.88442 0.87136 0.94844 0.88848 0.93889 0.95466 0.89230 0.96363 0.92785 0.90582 0.90046 0.90955 0.77521 0.90539 0.92850 0.89576 0.93876 0.94188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.09 12.10 29.01 0.35 -1.74 16 2 C -0.13 -1.76 5.64 -101.06 -0.57 -2.33 16 3 C -0.13 -1.81 10.04 36.00 0.36 -1.44 16 4 C 0.14 1.77 6.03 -5.19 -0.03 1.74 16 5 N -0.46 -7.43 2.79 -115.36 -0.32 -7.75 16 6 C 0.39 7.83 5.94 -318.86 -1.89 5.94 16 7 N -0.46 -9.57 3.95 -176.08 -0.70 -10.27 16 8 C 0.04 0.81 9.06 60.07 0.54 1.35 16 9 C 0.23 5.74 1.73 -68.86 -0.12 5.62 16 10 H 0.02 0.71 7.90 -51.93 -0.41 0.30 16 11 C -0.13 -3.37 8.80 37.16 0.33 -3.04 16 12 C -0.51 -13.42 7.97 -34.44 -0.27 -13.70 16 13 H 0.07 1.64 6.40 -52.49 -0.34 1.31 16 14 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 15 N -0.88 -24.93 11.32 55.43 0.63 -24.30 16 16 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 17 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 N -0.31 -7.01 10.18 30.32 0.31 -6.71 16 21 N -0.28 -5.38 11.61 32.99 0.38 -5.00 16 22 C 0.11 1.80 6.58 -154.02 -1.01 0.79 16 23 C 0.24 2.98 1.11 -91.77 -0.10 2.88 16 24 C -0.14 -1.69 8.07 37.16 0.30 -1.39 16 25 O -0.54 -5.67 9.57 -40.08 -0.38 -6.06 16 26 C 0.05 0.57 4.89 37.16 0.18 0.75 16 27 O -0.38 -4.22 9.90 -40.08 -0.40 -4.62 16 28 C 0.03 0.26 11.01 101.05 1.11 1.37 16 29 H 0.10 1.04 8.03 -52.49 -0.42 0.62 16 30 H 0.11 1.26 5.69 -52.48 -0.30 0.96 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.09 1.61 7.43 -51.92 -0.39 1.22 16 33 H 0.06 0.79 8.02 -51.93 -0.42 0.38 16 34 H 0.10 1.22 6.95 -51.93 -0.36 0.86 16 35 H 0.11 1.15 5.10 -51.93 -0.26 0.89 16 36 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.09 1.70 6.39 -51.93 -0.33 1.37 16 38 H 0.04 0.64 6.95 -51.93 -0.36 0.28 16 39 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.09 2.49 6.07 -51.93 -0.32 2.18 16 41 H 0.02 0.45 6.33 -51.93 -0.33 0.12 16 42 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 43 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 44 H 0.08 0.91 7.75 -51.93 -0.40 0.51 16 45 H 0.07 0.91 4.99 -51.93 -0.26 0.65 16 46 H 0.38 2.97 8.57 45.56 0.39 3.36 16 47 H 0.08 0.96 7.88 -51.93 -0.41 0.55 16 48 H 0.05 0.59 8.14 -51.92 -0.42 0.16 16 49 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 50 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 51 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 LS Contribution 398.34 15.07 6.00 6.00 Total: -1.00 -31.13 398.34 -7.85 -38.98 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -7.43 Total: 5.70 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: -0.92 Total: -1.57 kcal Atomic # 7 Polarization: -54.33 SS G_CDS: 0.30 Total: -54.03 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: -0.78 Total: -10.68 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -31.13 -7.85 -38.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356607577.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.841 kcal (2) G-P(sol) polarization free energy of solvation -31.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds