Wall clock time and date at job start Tue Mar 31 2020 22:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50698 * 119.99842 * 2 1 4 4 C 1.50707 * 120.00113 * 179.97438 * 2 1 3 5 5 N 1.46498 * 109.46939 * 95.27432 * 4 2 1 6 6 C 1.36456 * 127.13598 * 89.73071 * 5 4 2 7 7 N 1.38589 * 126.47047 * 0.02610 * 6 5 4 8 8 C 1.46901 * 110.99926 * 79.06564 * 7 6 5 9 9 C 1.46896 * 110.99843 * 203.01855 * 7 6 5 10 10 H 1.09004 * 109.47348 * 300.00277 * 9 7 6 11 11 C 1.53007 * 109.46879 * 59.99904 * 9 7 6 12 12 C 1.50700 * 109.47368 * 179.97438 * 9 7 6 13 13 H 1.07997 * 119.99396 * 359.97438 * 12 9 7 14 14 C 1.37875 * 120.00123 * 180.02562 * 12 9 7 15 15 N 1.31504 * 120.00226 * 359.97438 * 14 12 9 16 16 Si 1.86806 * 119.99549 * 179.97438 * 14 12 9 17 17 H 1.48493 * 109.47267 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.46880 * 119.99871 * 16 14 12 19 19 H 1.48496 * 109.46975 * 239.99655 * 16 14 12 20 20 N 1.31213 * 107.05285 * 179.87304 * 6 5 4 21 21 N 1.28520 * 109.86424 * 0.40791 * 20 6 5 22 22 C 1.30300 * 110.05167 * 359.74481 * 21 20 6 23 23 C 1.50698 * 126.34783 * 179.97438 * 22 21 20 24 24 C 1.52995 * 109.46848 * 271.85109 * 23 22 21 25 25 O 1.42900 * 109.47347 * 151.84832 * 23 22 21 26 26 C 1.53001 * 109.47379 * 31.84625 * 23 22 21 27 27 O 1.42904 * 109.47435 * 185.00090 * 26 23 22 28 28 C 1.42897 * 114.00063 * 179.97438 * 27 26 23 29 29 H 1.07998 * 120.00231 * 354.05929 * 1 2 3 30 30 H 1.08004 * 119.99788 * 173.77863 * 1 2 3 31 31 H 1.08999 * 109.47421 * 94.16417 * 3 2 1 32 32 H 1.09008 * 109.47071 * 214.15532 * 3 2 1 33 33 H 1.08999 * 109.47236 * 334.15585 * 3 2 1 34 34 H 1.08996 * 109.47274 * 215.27351 * 4 2 1 35 35 H 1.09000 * 109.47134 * 335.28160 * 4 2 1 36 36 H 1.09004 * 109.47068 * 67.87735 * 8 7 6 37 37 H 1.08998 * 109.47066 * 187.87492 * 8 7 6 38 38 H 1.08995 * 109.47541 * 307.87819 * 8 7 6 39 39 H 1.08995 * 109.46922 * 60.00226 * 11 9 7 40 40 H 1.08999 * 109.46717 * 179.97438 * 11 9 7 41 41 H 1.08995 * 109.47241 * 299.99944 * 11 9 7 42 42 H 0.97001 * 120.00311 * 180.02562 * 15 14 12 43 43 H 1.09004 * 109.47841 * 65.63967 * 24 23 22 44 44 H 1.09006 * 109.47135 * 185.63896 * 24 23 22 45 45 H 1.09003 * 109.47346 * 305.63631 * 24 23 22 46 46 H 0.96694 * 113.99911 * 302.59197 * 25 23 22 47 47 H 1.09003 * 109.47443 * 305.00733 * 26 23 22 48 48 H 1.09007 * 109.46978 * 65.00193 * 26 23 22 49 49 H 1.08993 * 109.46965 * 179.97438 * 28 27 26 50 50 H 1.08998 * 109.47192 * 300.00295 * 28 27 26 51 51 H 1.09004 * 109.46986 * 60.00072 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.0636 -1.3051 0.0006 5 7 2.4177 -1.6651 -1.3746 6 6 3.5526 -1.3216 -2.0499 7 7 4.6020 -0.5587 -1.5627 8 6 5.4815 -1.3615 -0.7025 9 6 5.3589 0.0574 -2.6606 10 1 5.7638 -0.7226 -3.3054 11 6 4.4314 0.9618 -3.4748 12 6 6.4888 0.8777 -2.0934 13 1 6.6301 0.9358 -1.0243 14 6 7.3414 1.5547 -2.9394 15 7 7.1690 1.4844 -4.2412 16 14 8.7415 2.5721 -2.2362 17 1 8.7189 2.4874 -0.7539 18 1 10.0360 2.0487 -2.7418 19 1 8.5829 3.9881 -2.6542 20 7 3.4641 -1.8529 -3.2464 21 7 2.3543 -2.4909 -3.3599 22 6 1.6768 -2.4099 -2.2499 23 6 0.3267 -3.0229 -1.9807 24 6 -0.7710 -2.0479 -2.4112 25 8 0.1984 -3.2984 -0.5844 26 6 0.1909 -4.3253 -2.7721 27 8 -1.1298 -4.8462 -2.6093 28 6 -1.3634 -6.0681 -3.3124 29 1 -0.5400 0.9302 0.0968 30 1 -0.5400 -0.9299 -0.1014 31 1 2.3098 1.5825 1.0249 32 1 2.9817 1.1946 -0.5770 33 1 1.4441 2.0822 -0.4480 34 1 2.9718 -1.2001 0.5940 35 1 1.4368 -2.0864 0.4307 36 1 5.9987 -2.1070 -1.3065 37 1 6.2131 -0.7112 -0.2231 38 1 4.8853 -1.8621 0.0604 39 1 4.0267 1.7418 -2.8300 40 1 4.9932 1.4193 -4.2891 41 1 3.6140 0.3689 -3.8850 42 1 7.7690 1.9604 -4.8364 43 1 -0.7359 -1.9154 -3.4926 44 1 -1.7442 -2.4473 -2.1256 45 1 -0.6152 -1.0863 -1.9221 46 1 0.8867 -3.8798 -0.2334 47 1 0.3768 -4.1298 -3.8283 48 1 0.9158 -5.0514 -2.4040 49 1 -2.3874 -6.3978 -3.1375 50 1 -1.2099 -5.9083 -4.3796 51 1 -0.6707 -6.8305 -2.9559 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001356607577.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:41 Heat of formation + Delta-G solvation = 7.311165 kcal Electronic energy + Delta-G solvation = -32123.241766 eV Core-core repulsion = 28060.200773 eV Total energy + Delta-G solvation = -4063.040993 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -44.09341 -39.93444 -38.78662 -38.11528 -37.26241 -34.99226 -34.24894 -33.38433 -31.26181 -30.33467 -28.68789 -28.39447 -27.70763 -27.40907 -26.60023 -25.98533 -24.16485 -23.33664 -21.75014 -21.02094 -19.87254 -18.63825 -18.45930 -17.74029 -17.42015 -17.20600 -17.01671 -16.84927 -16.41079 -16.14865 -15.78130 -15.52246 -15.29343 -15.02912 -14.87029 -14.56623 -14.26602 -14.04071 -13.73969 -13.51107 -13.41448 -13.18436 -13.04685 -13.01569 -12.86692 -12.79453 -12.68381 -12.55373 -12.52817 -12.27083 -12.23925 -12.16750 -12.05630 -12.02394 -11.50656 -11.24533 -11.08928 -10.97748 -10.67147 -10.58283 -10.34611 -10.07835 -9.21013 -8.12734 -6.27332 0.65596 0.92822 1.44314 1.45462 1.56267 1.60000 1.78965 2.40985 2.57635 2.85584 3.06357 3.19377 3.32331 3.68977 3.74392 3.77327 3.83377 4.05643 4.21161 4.31744 4.42078 4.47162 4.48336 4.54122 4.58465 4.60281 4.64897 4.69691 4.79577 4.81175 4.84778 4.86675 4.89758 4.91423 4.96471 4.99888 5.03469 5.12309 5.19506 5.26403 5.41794 5.52009 5.62835 5.66260 5.85919 5.90362 5.98107 6.11321 6.15978 6.45501 6.60080 6.83405 7.41681 7.76851 8.94447 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.017483 B = 0.003432 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.183307 B = 8157.234644 C = 8946.554479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.158 4.158 3 C -0.123 4.123 4 C 0.134 3.866 5 N -0.451 5.451 6 C 0.375 3.625 7 N -0.454 5.454 8 C 0.045 3.955 9 C 0.243 3.757 10 H -0.022 1.022 11 C -0.113 4.113 12 C -0.521 4.521 13 H 0.075 0.925 14 C 0.013 3.987 15 N -0.920 5.920 16 Si 0.967 3.033 17 H -0.258 1.258 18 H -0.284 1.284 19 H -0.283 1.283 20 N -0.363 5.363 21 N -0.309 5.309 22 C 0.140 3.860 23 C 0.249 3.751 24 C -0.137 4.137 25 O -0.535 6.535 26 C 0.055 3.945 27 O -0.390 6.390 28 C 0.025 3.975 29 H 0.111 0.889 30 H 0.121 0.879 31 H 0.079 0.921 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.102 0.898 35 H 0.140 0.860 36 H 0.016 0.984 37 H 0.093 0.907 38 H 0.080 0.920 39 H 0.028 0.972 40 H 0.062 0.938 41 H 0.011 0.989 42 H 0.262 0.738 43 H 0.067 0.933 44 H 0.096 0.904 45 H 0.068 0.932 46 H 0.391 0.609 47 H 0.062 0.938 48 H 0.060 0.940 49 H 0.105 0.895 50 H 0.044 0.956 51 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.902 -10.663 11.348 22.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.159 4.159 3 C -0.180 4.180 4 C 0.014 3.986 5 N -0.145 5.145 6 C 0.018 3.982 7 N -0.179 5.179 8 C -0.102 4.102 9 C 0.138 3.862 10 H -0.005 1.005 11 C -0.171 4.171 12 C -0.560 4.560 13 H 0.093 0.907 14 C -0.187 4.187 15 N -0.559 5.559 16 Si 0.792 3.208 17 H -0.182 1.182 18 H -0.210 1.210 19 H -0.210 1.210 20 N -0.207 5.207 21 N -0.150 5.150 22 C -0.130 4.130 23 C 0.205 3.795 24 C -0.194 4.194 25 O -0.342 6.342 26 C -0.023 4.023 27 O -0.309 6.309 28 C -0.071 4.071 29 H 0.129 0.871 30 H 0.139 0.861 31 H 0.097 0.903 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.120 0.880 35 H 0.158 0.842 36 H 0.034 0.966 37 H 0.111 0.889 38 H 0.099 0.901 39 H 0.047 0.953 40 H 0.081 0.919 41 H 0.030 0.970 42 H 0.071 0.929 43 H 0.086 0.914 44 H 0.115 0.885 45 H 0.087 0.913 46 H 0.242 0.758 47 H 0.080 0.920 48 H 0.078 0.922 49 H 0.123 0.877 50 H 0.063 0.937 51 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -17.270 -10.132 10.161 22.453 hybrid contribution 1.875 0.104 0.159 1.884 sum -15.396 -10.028 10.320 21.074 Atomic orbital electron populations 1.24191 0.94712 1.03677 0.96986 1.21805 0.95900 0.94911 1.03244 1.20877 1.00279 0.94229 1.02594 1.21485 1.02091 0.97150 0.77848 1.46389 1.13686 1.39897 1.14490 1.22978 0.90577 0.95721 0.88926 1.59123 1.09450 1.26781 1.22526 1.22341 0.96218 0.96115 0.95482 1.18924 0.90077 0.91515 0.85721 1.00451 1.21564 0.97088 0.98372 1.00086 1.21375 1.11188 1.29545 0.93857 0.90692 1.25771 1.00296 0.97633 0.94976 1.70078 1.38812 1.43543 1.03475 0.85364 0.78359 0.77932 0.79108 1.18157 1.20989 1.20953 1.74706 1.14307 1.14114 1.17606 1.73826 1.01398 1.18722 1.21054 1.25616 0.98759 1.00705 0.87922 1.19104 0.84743 0.93139 0.82535 1.21882 0.97838 0.98070 1.01651 1.86571 1.55601 1.71156 1.20853 1.22840 0.85364 0.94006 1.00077 1.87838 1.29430 1.40921 1.72666 1.22960 1.03103 0.85104 0.95950 0.87052 0.86115 0.90251 0.92646 0.92407 0.88010 0.84218 0.96569 0.88883 0.90100 0.95331 0.91880 0.96999 0.92869 0.91430 0.88522 0.91306 0.75817 0.91997 0.92162 0.87706 0.93705 0.93314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.14 12.10 67.78 0.82 -2.32 16 2 C -0.16 -3.74 5.64 -16.49 -0.09 -3.83 16 3 C -0.12 -3.33 10.04 71.24 0.72 -2.61 16 4 C 0.13 3.10 6.03 85.64 0.52 3.61 16 5 N -0.45 -14.03 2.79 -518.90 -1.45 -15.48 16 6 C 0.38 15.27 5.94 260.11 1.55 16.82 16 7 N -0.45 -19.20 3.95 -710.98 -2.81 -22.01 16 8 C 0.05 1.64 9.06 127.69 1.16 2.79 16 9 C 0.24 12.70 1.73 44.17 0.08 12.78 16 10 H -0.02 -1.35 7.90 -2.38 -0.02 -1.37 16 11 C -0.11 -6.04 8.80 71.98 0.63 -5.40 16 12 C -0.52 -27.67 7.97 25.60 0.20 -27.47 16 13 H 0.08 3.76 6.40 -2.91 -0.02 3.74 16 14 C 0.01 0.68 5.30 84.66 0.45 1.13 16 15 N -0.92 -53.75 11.32 21.44 0.24 -53.51 16 16 Si 0.97 42.55 29.54 68.60 2.03 44.58 16 17 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 18 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 19 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 20 N -0.36 -16.84 10.18 -58.00 -0.59 -17.43 16 21 N -0.31 -12.33 11.61 -49.54 -0.57 -12.91 16 22 C 0.14 4.31 6.58 137.64 0.91 5.22 16 23 C 0.25 5.60 1.11 -11.54 -0.01 5.59 16 24 C -0.14 -3.01 8.07 71.98 0.58 -2.43 16 25 O -0.54 -9.23 9.57 -144.35 -1.38 -10.61 16 26 C 0.06 1.19 4.89 71.98 0.35 1.54 16 27 O -0.39 -7.71 9.90 -144.35 -1.43 -9.14 16 28 C 0.02 0.35 11.01 113.37 1.25 1.59 16 29 H 0.11 1.96 8.03 -2.91 -0.02 1.93 16 30 H 0.12 2.22 5.69 -2.91 -0.02 2.21 16 31 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.05 1.93 7.43 -2.38 -0.02 1.91 16 33 H 0.06 1.51 8.02 -2.39 -0.02 1.50 16 34 H 0.10 2.28 6.95 -2.39 -0.02 2.26 16 35 H 0.14 2.36 5.10 -2.39 -0.01 2.35 16 36 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.09 3.33 6.39 -2.39 -0.02 3.32 16 38 H 0.08 2.26 6.95 -2.39 -0.02 2.25 16 39 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.06 3.69 6.07 -2.39 -0.01 3.68 16 41 H 0.01 0.60 6.33 -2.39 -0.02 0.59 16 42 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 43 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 44 H 0.10 1.87 7.75 -2.38 -0.02 1.85 16 45 H 0.07 1.55 4.99 -2.39 -0.01 1.54 16 46 H 0.39 4.57 8.57 -74.06 -0.63 3.93 16 47 H 0.06 1.53 7.88 -2.39 -0.02 1.51 16 48 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 49 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 50 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 51 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 Total: -1.00 -70.46 398.34 3.44 -67.03 By element: Atomic # 1 Polarization: 22.15 SS G_CDS: 0.31 Total: 22.46 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: 9.10 Total: 7.01 kcal Atomic # 7 Polarization: -116.15 SS G_CDS: -5.18 Total: -121.33 kcal Atomic # 8 Polarization: -16.94 SS G_CDS: -2.81 Total: -19.75 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -70.46 3.44 -67.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356607577.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.337 kcal (2) G-P(sol) polarization free energy of solvation -70.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds