Wall clock time and date at job start Tue Mar 31 2020 22:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 114.00112 * 2 1 4 4 C 1.52997 * 109.47040 * 180.02562 * 3 2 1 5 5 H 1.09005 * 109.46906 * 304.99631 * 4 3 2 6 6 C 1.53008 * 109.47012 * 185.00277 * 4 3 2 7 7 N 1.46495 * 109.47017 * 174.99912 * 6 4 3 8 8 C 1.36738 * 127.13919 * 94.49933 * 7 6 4 9 9 C 1.50703 * 126.34776 * 0.02562 * 8 7 6 10 10 C 1.52994 * 117.49884 * 188.62520 * 9 8 7 11 11 C 1.52994 * 117.50141 * 120.00028 * 9 8 7 12 12 N 1.30297 * 107.30544 * 179.97438 * 8 7 6 13 13 N 1.28521 * 110.05263 * 359.97438 * 12 8 7 14 14 C 1.31218 * 109.86537 * 359.74129 * 13 12 8 15 15 N 1.38579 * 126.47784 * 180.25339 * 14 13 12 16 16 C 1.46902 * 110.99396 * 70.59249 * 15 14 13 17 17 C 1.46895 * 111.00283 * 306.63825 * 15 14 13 18 18 H 1.09003 * 109.46932 * 59.99450 * 17 15 14 19 19 C 1.53001 * 109.46969 * 299.99748 * 17 15 14 20 20 C 1.50700 * 109.47301 * 179.97438 * 17 15 14 21 21 H 1.07999 * 119.99487 * 0.02562 * 20 17 15 22 22 C 1.37878 * 120.00104 * 179.97438 * 20 17 15 23 23 N 1.31510 * 119.99858 * 0.02562 * 22 20 17 24 24 Si 1.86801 * 119.99947 * 179.97438 * 22 20 17 25 25 H 1.48498 * 109.46771 * 90.00414 * 24 22 20 26 26 H 1.48496 * 109.46950 * 210.00159 * 24 22 20 27 27 H 1.48498 * 109.47044 * 330.00315 * 24 22 20 28 28 O 1.42900 * 109.47620 * 65.00204 * 4 3 2 29 29 C 1.42904 * 113.99369 * 270.00088 * 28 4 3 30 30 H 1.09003 * 109.47163 * 180.02562 * 1 2 3 31 31 H 1.09009 * 109.46832 * 299.99299 * 1 2 3 32 32 H 1.08991 * 109.47480 * 59.99877 * 1 2 3 33 33 H 1.08996 * 109.47043 * 60.00095 * 3 2 1 34 34 H 1.09005 * 109.46949 * 300.00531 * 3 2 1 35 35 H 1.09000 * 109.46540 * 294.99735 * 6 4 3 36 36 H 1.08999 * 109.46856 * 54.99361 * 6 4 3 37 37 H 1.09004 * 115.54823 * 334.32691 * 9 8 7 38 38 H 1.08997 * 117.50246 * 359.97438 * 10 9 8 39 39 H 1.09000 * 117.49918 * 145.02006 * 10 9 8 40 40 H 1.09002 * 117.49933 * 214.98257 * 11 9 8 41 41 H 1.09002 * 117.49718 * 359.97407 * 11 9 8 42 42 H 1.08997 * 109.47686 * 53.70738 * 16 15 14 43 43 H 1.09010 * 109.46471 * 173.70360 * 16 15 14 44 44 H 1.08996 * 109.47259 * 293.69756 * 16 15 14 45 45 H 1.08997 * 109.47434 * 299.99793 * 19 17 15 46 46 H 1.09003 * 109.46927 * 60.00517 * 19 17 15 47 47 H 1.09003 * 109.47218 * 179.97438 * 19 17 15 48 48 H 0.97001 * 119.99820 * 179.97438 * 23 22 20 49 49 H 1.08997 * 109.47152 * 299.99493 * 29 28 4 50 50 H 1.09005 * 109.46536 * 180.02562 * 29 28 4 51 51 H 1.08999 * 109.47648 * 59.99762 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 1 3.8514 0.5682 0.8410 6 6 4.1574 2.5769 0.1252 7 7 5.6122 2.4528 0.2446 8 6 6.5324 2.5239 -0.7642 9 6 6.2402 2.7476 -2.2256 10 6 7.4008 2.5914 -3.2101 11 6 6.8532 3.9831 -2.8877 12 7 7.7089 2.3634 -0.2277 13 7 7.5955 2.1977 1.0417 14 6 6.3306 2.2493 1.3868 15 7 5.8203 2.1180 2.6685 16 6 6.1474 3.2923 3.4882 17 6 6.3007 0.8830 3.3025 18 1 7.3891 0.9038 3.3600 19 6 5.8568 -0.3227 2.4719 20 6 5.7267 0.7753 4.6917 21 1 5.0703 1.5469 5.0660 22 6 6.0388 -0.3088 5.4845 23 7 6.8378 -1.2485 5.0284 24 14 5.3278 -0.4419 7.2068 25 1 4.0338 -1.1684 7.1532 26 1 6.2756 -1.1825 8.0776 27 1 5.1089 0.9193 7.7585 28 8 3.9649 0.5796 -1.2220 29 6 4.0463 -0.8460 -1.1671 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 1.6886 1.8463 0.8900 34 1 1.6885 1.8464 -0.8900 35 1 3.9143 3.1646 -0.7600 36 1 3.7610 3.0732 1.0110 37 1 5.2506 2.4360 -2.5602 38 1 8.3759 2.3273 -2.8009 39 1 7.1751 2.1770 -4.1927 40 1 6.2672 4.4844 -3.6580 41 1 7.4676 4.6345 -2.2661 42 1 5.8174 4.1962 2.9762 43 1 5.6424 3.2153 4.4512 44 1 7.2250 3.3367 3.6456 45 1 4.7686 -0.3435 2.4143 46 1 6.2724 -0.2446 1.4672 47 1 6.2137 -1.2391 2.9420 48 1 7.0576 -2.0110 5.5863 49 1 4.7575 -1.1399 -0.3951 50 1 4.3795 -1.2283 -2.1320 51 1 3.0646 -1.2573 -0.9322 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001391045511.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:31 Heat of formation + Delta-G solvation = 33.237303 kcal Electronic energy + Delta-G solvation = -32101.982024 eV Core-core repulsion = 28040.065272 eV Total energy + Delta-G solvation = -4061.916751 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -42.47629 -38.90066 -37.41057 -37.06823 -36.57197 -34.69552 -32.87249 -31.08579 -29.52185 -28.95858 -27.46075 -26.26200 -25.72889 -25.21381 -24.33361 -23.68423 -22.38347 -22.04777 -21.33433 -19.93279 -19.18988 -17.29753 -17.03175 -16.54478 -16.28381 -16.12731 -15.68278 -15.38187 -15.28989 -15.03213 -14.66078 -14.38906 -14.27871 -13.97377 -13.64501 -13.22440 -12.99239 -12.59870 -12.42600 -12.32792 -12.15655 -11.86476 -11.82286 -11.51662 -11.33891 -11.20603 -11.11900 -10.96976 -10.90215 -10.77815 -10.76271 -10.52064 -10.30567 -10.26608 -10.12552 -9.94816 -9.83582 -9.79871 -9.35755 -9.08968 -8.51737 -8.25161 -7.69560 -6.07405 -4.14225 2.15172 2.64859 3.26971 3.31938 3.33972 3.36045 3.56585 3.72896 3.99914 4.32196 4.46064 4.61460 4.73378 4.87589 4.89728 4.96386 4.98672 5.06915 5.16172 5.17540 5.21063 5.24957 5.30009 5.40314 5.50630 5.56586 5.61434 5.72439 5.74451 5.76675 5.86343 5.92780 5.96515 6.07446 6.19770 6.31895 6.35679 6.48978 6.60008 6.77009 6.91849 6.94563 6.97547 7.16373 7.19855 7.40264 7.66282 7.74501 7.91960 8.18502 8.46083 8.89132 9.33412 9.50675 10.99419 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.009242 B = 0.004762 C = 0.003580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3029.069345 B = 5878.241589 C = 7819.716540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.384 6.384 3 C 0.046 3.954 4 C 0.072 3.928 5 H 0.093 0.907 6 C 0.127 3.873 7 N -0.464 5.464 8 C 0.205 3.795 9 C -0.072 4.072 10 C -0.151 4.151 11 C -0.166 4.166 12 N -0.294 5.294 13 N -0.316 5.316 14 C 0.377 3.623 15 N -0.473 5.473 16 C 0.050 3.950 17 C 0.227 3.773 18 H 0.022 0.978 19 C -0.128 4.128 20 C -0.512 4.512 21 H 0.066 0.934 22 C 0.063 3.937 23 N -0.887 5.887 24 Si 0.900 3.100 25 H -0.281 1.281 26 H -0.286 1.286 27 H -0.273 1.273 28 O -0.378 6.378 29 C 0.035 3.965 30 H 0.085 0.915 31 H 0.042 0.958 32 H 0.039 0.961 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.096 0.904 36 H 0.112 0.888 37 H 0.126 0.874 38 H 0.108 0.892 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.097 0.903 42 H 0.042 0.958 43 H 0.089 0.911 44 H 0.034 0.966 45 H 0.030 0.970 46 H 0.003 0.997 47 H 0.091 0.909 48 H 0.263 0.737 49 H 0.042 0.958 50 H 0.079 0.921 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.922 7.251 -14.622 19.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.302 6.302 3 C -0.031 4.031 4 C 0.012 3.988 5 H 0.111 0.889 6 C 0.002 3.998 7 N -0.157 5.157 8 C -0.061 4.061 9 C -0.093 4.093 10 C -0.188 4.188 11 C -0.204 4.204 12 N -0.134 5.134 13 N -0.158 5.158 14 C 0.022 3.978 15 N -0.201 5.201 16 C -0.097 4.097 17 C 0.123 3.877 18 H 0.040 0.960 19 C -0.186 4.186 20 C -0.550 4.550 21 H 0.084 0.916 22 C -0.139 4.139 23 N -0.525 5.525 24 Si 0.727 3.273 25 H -0.207 1.207 26 H -0.212 1.212 27 H -0.198 1.198 28 O -0.297 6.297 29 C -0.062 4.062 30 H 0.104 0.896 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.115 0.885 36 H 0.130 0.870 37 H 0.144 0.856 38 H 0.126 0.874 39 H 0.117 0.883 40 H 0.117 0.883 41 H 0.115 0.885 42 H 0.061 0.939 43 H 0.108 0.892 44 H 0.053 0.947 45 H 0.049 0.951 46 H 0.022 0.978 47 H 0.109 0.891 48 H 0.073 0.927 49 H 0.060 0.940 50 H 0.097 0.903 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.676 6.833 -14.583 18.788 hybrid contribution -1.456 -0.134 1.196 1.889 sum -11.133 6.699 -13.387 18.655 Atomic orbital electron populations 1.22743 0.81054 1.02780 0.99865 1.87905 1.19708 1.27246 1.95378 1.23005 0.93594 0.85629 1.00920 1.22552 0.91383 0.94955 0.89869 0.88867 1.21649 0.77211 0.96301 1.04612 1.46054 1.07568 1.54992 1.07126 1.23447 0.85629 1.05740 0.91319 1.20004 0.99764 1.04588 0.84936 1.22949 0.98327 0.98906 0.98657 1.23046 1.03565 0.91096 1.02691 1.73899 1.19773 1.17930 1.01826 1.74695 1.14998 1.20837 1.05295 1.22800 0.86103 1.00089 0.88836 1.59271 1.58046 1.06803 0.95953 1.22204 1.00144 0.89488 0.97905 1.19390 0.94928 0.81230 0.92180 0.95980 1.21822 0.98428 1.02558 0.95781 1.21040 1.29584 1.07211 0.97193 0.91626 1.24905 0.94994 0.95511 0.98491 1.69901 1.35163 1.10566 1.36844 0.86473 0.78742 0.78190 0.83847 1.20681 1.21212 1.19828 1.87779 1.88005 1.20674 1.33250 1.22819 1.01189 0.80283 1.01871 0.89646 0.93935 0.94223 0.91919 0.92513 0.88537 0.87029 0.85639 0.87404 0.88278 0.88310 0.88468 0.93932 0.89229 0.94694 0.95131 0.97846 0.89052 0.92740 0.93978 0.90290 0.92516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.41 16 2 O -0.38 -4.92 8.83 -40.08 -0.35 -5.27 16 3 C 0.05 0.53 5.60 37.16 0.21 0.74 16 4 C 0.07 1.01 2.74 -26.73 -0.07 0.94 16 5 H 0.09 1.66 6.22 -51.93 -0.32 1.34 16 6 C 0.13 1.68 5.73 -4.04 -0.02 1.66 16 7 N -0.46 -8.06 2.76 -114.08 -0.31 -8.37 16 8 C 0.21 3.57 7.59 -154.01 -1.17 2.40 16 9 C -0.07 -0.94 5.81 -91.78 -0.53 -1.47 16 10 C -0.15 -1.72 10.15 -26.73 -0.27 -1.99 16 11 C -0.17 -1.75 10.23 -26.73 -0.27 -2.02 16 12 N -0.29 -6.16 11.79 32.99 0.39 -5.77 16 13 N -0.32 -7.33 11.98 30.32 0.36 -6.97 16 14 C 0.38 7.92 5.09 -318.87 -1.62 6.30 16 15 N -0.47 -10.22 4.66 -176.08 -0.82 -11.04 16 16 C 0.05 0.98 9.14 60.07 0.55 1.53 16 17 C 0.23 5.77 1.96 -68.87 -0.13 5.64 16 18 H 0.02 0.66 8.01 -51.93 -0.42 0.24 16 19 C -0.13 -3.21 8.57 37.16 0.32 -2.89 16 20 C -0.51 -13.49 7.95 -34.44 -0.27 -13.76 16 21 H 0.07 1.67 6.40 -52.49 -0.34 1.34 16 22 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 23 N -0.89 -25.11 11.32 55.43 0.63 -24.48 16 24 Si 0.90 20.75 29.54 -169.99 -5.02 15.73 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 27 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 28 O -0.38 -5.50 9.89 -40.08 -0.40 -5.89 16 29 C 0.03 0.49 10.71 101.05 1.08 1.57 16 30 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.04 0.35 8.14 -51.92 -0.42 -0.07 16 32 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.10 1.01 7.70 -51.93 -0.40 0.61 16 36 H 0.11 1.38 8.14 -51.93 -0.42 0.95 16 37 H 0.13 1.48 7.61 -51.93 -0.40 1.09 16 38 H 0.11 1.43 7.92 -51.93 -0.41 1.02 16 39 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.04 0.71 8.10 -51.93 -0.42 0.29 16 43 H 0.09 1.73 6.32 -51.92 -0.33 1.40 16 44 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.03 0.73 6.90 -51.93 -0.36 0.37 16 46 H 0.00 0.06 7.22 -51.93 -0.38 -0.31 16 47 H 0.09 2.52 6.07 -51.93 -0.32 2.20 16 48 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 49 H 0.04 0.69 8.08 -51.93 -0.42 0.27 16 50 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 51 H 0.06 0.78 6.40 -51.93 -0.33 0.45 16 LS Contribution 410.48 15.07 6.19 6.19 Total: -1.00 -32.23 410.48 -9.16 -41.38 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -8.62 Total: 2.84 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: -1.20 Total: 1.66 kcal Atomic # 7 Polarization: -56.87 SS G_CDS: 0.25 Total: -56.63 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: -0.75 Total: -11.17 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -32.23 -9.16 -41.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001391045511.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.621 kcal (2) G-P(sol) polarization free energy of solvation -32.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.87 seconds