Wall clock time and date at job start Tue Mar 31 2020 22:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 114.00112 * 2 1 4 4 C 1.52997 * 109.47040 * 180.02562 * 3 2 1 5 5 H 1.09005 * 109.46906 * 304.99631 * 4 3 2 6 6 C 1.53008 * 109.47012 * 185.00277 * 4 3 2 7 7 N 1.46495 * 109.47017 * 174.99912 * 6 4 3 8 8 C 1.36738 * 127.13919 * 94.49933 * 7 6 4 9 9 C 1.50703 * 126.34776 * 0.02562 * 8 7 6 10 10 C 1.52994 * 117.49884 * 188.62520 * 9 8 7 11 11 C 1.52994 * 117.50141 * 120.00028 * 9 8 7 12 12 N 1.30297 * 107.30544 * 179.97438 * 8 7 6 13 13 N 1.28521 * 110.05263 * 359.97438 * 12 8 7 14 14 C 1.31218 * 109.86537 * 359.74129 * 13 12 8 15 15 N 1.38579 * 126.47784 * 180.25339 * 14 13 12 16 16 C 1.46902 * 110.99396 * 70.59249 * 15 14 13 17 17 C 1.46895 * 111.00283 * 306.63825 * 15 14 13 18 18 H 1.09003 * 109.46932 * 59.99450 * 17 15 14 19 19 C 1.53001 * 109.46969 * 299.99748 * 17 15 14 20 20 C 1.50700 * 109.47301 * 179.97438 * 17 15 14 21 21 H 1.07999 * 119.99487 * 0.02562 * 20 17 15 22 22 C 1.37878 * 120.00104 * 179.97438 * 20 17 15 23 23 N 1.31510 * 119.99858 * 0.02562 * 22 20 17 24 24 Si 1.86801 * 119.99947 * 179.97438 * 22 20 17 25 25 H 1.48498 * 109.46771 * 90.00414 * 24 22 20 26 26 H 1.48496 * 109.46950 * 210.00159 * 24 22 20 27 27 H 1.48498 * 109.47044 * 330.00315 * 24 22 20 28 28 O 1.42900 * 109.47620 * 65.00204 * 4 3 2 29 29 C 1.42904 * 113.99369 * 270.00088 * 28 4 3 30 30 H 1.09003 * 109.47163 * 180.02562 * 1 2 3 31 31 H 1.09009 * 109.46832 * 299.99299 * 1 2 3 32 32 H 1.08991 * 109.47480 * 59.99877 * 1 2 3 33 33 H 1.08996 * 109.47043 * 60.00095 * 3 2 1 34 34 H 1.09005 * 109.46949 * 300.00531 * 3 2 1 35 35 H 1.09000 * 109.46540 * 294.99735 * 6 4 3 36 36 H 1.08999 * 109.46856 * 54.99361 * 6 4 3 37 37 H 1.09004 * 115.54823 * 334.32691 * 9 8 7 38 38 H 1.08997 * 117.50246 * 359.97438 * 10 9 8 39 39 H 1.09000 * 117.49918 * 145.02006 * 10 9 8 40 40 H 1.09002 * 117.49933 * 214.98257 * 11 9 8 41 41 H 1.09002 * 117.49718 * 359.97407 * 11 9 8 42 42 H 1.08997 * 109.47686 * 53.70738 * 16 15 14 43 43 H 1.09010 * 109.46471 * 173.70360 * 16 15 14 44 44 H 1.08996 * 109.47259 * 293.69756 * 16 15 14 45 45 H 1.08997 * 109.47434 * 299.99793 * 19 17 15 46 46 H 1.09003 * 109.46927 * 60.00517 * 19 17 15 47 47 H 1.09003 * 109.47218 * 179.97438 * 19 17 15 48 48 H 0.97001 * 119.99820 * 179.97438 * 23 22 20 49 49 H 1.08997 * 109.47152 * 299.99493 * 29 28 4 50 50 H 1.09005 * 109.46536 * 180.02562 * 29 28 4 51 51 H 1.08999 * 109.47648 * 59.99762 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 1 3.8514 0.5682 0.8410 6 6 4.1574 2.5769 0.1252 7 7 5.6122 2.4528 0.2446 8 6 6.5324 2.5239 -0.7642 9 6 6.2402 2.7476 -2.2256 10 6 7.4008 2.5914 -3.2101 11 6 6.8532 3.9831 -2.8877 12 7 7.7089 2.3634 -0.2277 13 7 7.5955 2.1977 1.0417 14 6 6.3306 2.2493 1.3868 15 7 5.8203 2.1180 2.6685 16 6 6.1474 3.2923 3.4882 17 6 6.3007 0.8830 3.3025 18 1 7.3891 0.9038 3.3600 19 6 5.8568 -0.3227 2.4719 20 6 5.7267 0.7753 4.6917 21 1 5.0703 1.5469 5.0660 22 6 6.0388 -0.3088 5.4845 23 7 6.8378 -1.2485 5.0284 24 14 5.3278 -0.4419 7.2068 25 1 4.0338 -1.1684 7.1532 26 1 6.2756 -1.1825 8.0776 27 1 5.1089 0.9193 7.7585 28 8 3.9649 0.5796 -1.2220 29 6 4.0463 -0.8460 -1.1671 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 1.6886 1.8463 0.8900 34 1 1.6885 1.8464 -0.8900 35 1 3.9143 3.1646 -0.7600 36 1 3.7610 3.0732 1.0110 37 1 5.2506 2.4360 -2.5602 38 1 8.3759 2.3273 -2.8009 39 1 7.1751 2.1770 -4.1927 40 1 6.2672 4.4844 -3.6580 41 1 7.4676 4.6345 -2.2661 42 1 5.8174 4.1962 2.9762 43 1 5.6424 3.2153 4.4512 44 1 7.2250 3.3367 3.6456 45 1 4.7686 -0.3435 2.4143 46 1 6.2724 -0.2446 1.4672 47 1 6.2137 -1.2391 2.9420 48 1 7.0576 -2.0110 5.5863 49 1 4.7575 -1.1399 -0.3951 50 1 4.3795 -1.2283 -2.1320 51 1 3.0646 -1.2573 -0.9322 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001391045511.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:29 Heat of formation + Delta-G solvation = 13.320007 kcal Electronic energy + Delta-G solvation = -32102.845702 eV Core-core repulsion = 28040.065272 eV Total energy + Delta-G solvation = -4062.780430 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.96929 -39.92980 -38.95440 -38.04023 -37.80629 -36.01647 -34.86791 -32.23742 -31.46752 -30.54910 -28.36721 -27.58470 -27.39078 -26.35851 -26.01430 -24.94935 -23.62191 -23.17481 -22.74044 -21.31850 -20.71469 -18.62945 -18.29950 -18.10725 -17.65698 -17.24825 -16.99522 -16.77930 -16.47139 -16.28447 -16.07870 -15.75685 -15.37845 -15.32622 -15.03680 -14.89689 -14.26749 -14.00039 -13.79201 -13.52301 -13.45130 -13.12664 -13.08299 -12.86551 -12.83926 -12.67872 -12.54093 -12.37049 -12.28611 -12.21785 -12.21036 -12.12300 -11.97161 -11.82257 -11.57928 -11.35894 -11.16738 -11.07767 -10.70095 -10.58554 -10.47096 -9.78963 -9.51478 -8.15196 -6.29899 0.72848 1.30245 1.44771 1.45327 1.56011 1.81365 2.40302 2.58434 2.71663 3.00165 3.02499 3.16940 3.35372 3.66486 3.84150 3.93230 3.94348 4.03890 4.09641 4.14965 4.23914 4.36029 4.39357 4.44166 4.45247 4.52185 4.57476 4.59865 4.61924 4.68221 4.69925 4.80504 4.82703 4.82807 4.84684 4.89104 4.91336 4.99384 5.02352 5.11889 5.25048 5.33836 5.35958 5.54760 5.63540 5.87731 5.95671 6.03762 6.12271 6.19525 6.61263 6.80864 7.39461 7.80134 8.92116 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.009242 B = 0.004762 C = 0.003580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3029.069345 B = 5878.241589 C = 7819.716540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.415 6.415 3 C 0.051 3.949 4 C 0.074 3.926 5 H 0.048 0.952 6 C 0.120 3.880 7 N -0.458 5.458 8 C 0.225 3.775 9 C -0.091 4.091 10 C -0.150 4.150 11 C -0.139 4.139 12 N -0.335 5.335 13 N -0.363 5.363 14 C 0.361 3.639 15 N -0.463 5.463 16 C 0.053 3.947 17 C 0.239 3.761 18 H -0.030 1.030 19 C -0.101 4.101 20 C -0.521 4.521 21 H 0.077 0.923 22 C 0.012 3.988 23 N -0.922 5.922 24 Si 0.969 3.031 25 H -0.274 1.274 26 H -0.288 1.288 27 H -0.260 1.260 28 O -0.380 6.380 29 C 0.041 3.959 30 H 0.090 0.910 31 H 0.049 0.951 32 H 0.058 0.942 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.136 0.864 36 H 0.124 0.876 37 H 0.147 0.853 38 H 0.081 0.919 39 H 0.130 0.870 40 H 0.138 0.862 41 H 0.081 0.919 42 H 0.075 0.925 43 H 0.092 0.908 44 H 0.012 0.988 45 H 0.035 0.965 46 H -0.008 1.008 47 H 0.063 0.937 48 H 0.263 0.737 49 H 0.007 0.993 50 H 0.100 0.900 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.049 9.160 -16.284 23.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.334 6.334 3 C -0.026 4.026 4 C 0.015 3.985 5 H 0.066 0.934 6 C -0.003 4.003 7 N -0.151 5.151 8 C -0.043 4.043 9 C -0.112 4.112 10 C -0.188 4.188 11 C -0.177 4.177 12 N -0.174 5.174 13 N -0.205 5.205 14 C 0.004 3.996 15 N -0.189 5.189 16 C -0.094 4.094 17 C 0.133 3.867 18 H -0.013 1.013 19 C -0.159 4.159 20 C -0.559 4.559 21 H 0.095 0.905 22 C -0.187 4.187 23 N -0.562 5.562 24 Si 0.794 3.206 25 H -0.199 1.199 26 H -0.214 1.214 27 H -0.184 1.184 28 O -0.299 6.299 29 C -0.055 4.055 30 H 0.109 0.891 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.102 0.898 35 H 0.154 0.846 36 H 0.142 0.858 37 H 0.164 0.836 38 H 0.100 0.900 39 H 0.148 0.852 40 H 0.156 0.844 41 H 0.100 0.900 42 H 0.093 0.907 43 H 0.111 0.889 44 H 0.031 0.969 45 H 0.054 0.946 46 H 0.011 0.989 47 H 0.082 0.918 48 H 0.072 0.928 49 H 0.025 0.975 50 H 0.119 0.881 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.830 8.771 -16.261 22.494 hybrid contribution -0.465 -0.718 1.583 1.800 sum -13.295 8.053 -14.678 21.379 Atomic orbital electron populations 1.22917 0.79188 1.03654 1.01082 1.87858 1.21790 1.28123 1.95654 1.22969 0.91222 0.85610 1.02782 1.22506 0.93584 0.94358 0.88063 0.93360 1.22073 0.74538 0.96536 1.07109 1.46198 1.09154 1.54021 1.05690 1.24357 0.84643 1.02238 0.93033 1.20310 1.01279 1.07443 0.82136 1.23030 0.96477 1.00063 0.99246 1.23134 1.02364 0.90108 1.02136 1.73809 1.21993 1.20478 1.01145 1.74563 1.16898 1.22203 1.06874 1.22672 0.86278 1.01385 0.89269 1.59199 1.57296 1.05981 0.96463 1.22242 0.98837 0.90032 0.98323 1.19022 0.91764 0.83157 0.92741 1.01251 1.21499 0.98296 1.01391 0.94708 1.21327 1.29501 1.07486 0.97566 0.90546 1.25802 0.95194 0.95080 1.02614 1.70065 1.36528 1.11178 1.38381 0.85383 0.77877 0.78684 0.78670 1.19935 1.21444 1.18369 1.87745 1.88276 1.20538 1.33305 1.22767 1.00435 0.80455 1.01860 0.89107 0.93275 0.92355 0.90746 0.89761 0.84560 0.85809 0.83574 0.90018 0.85235 0.84413 0.89990 0.90680 0.88905 0.96919 0.94560 0.98877 0.91804 0.92826 0.97471 0.88116 0.92178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 113.37 1.25 1.68 16 2 O -0.41 -9.90 8.83 -144.35 -1.27 -11.18 16 3 C 0.05 1.04 5.60 71.98 0.40 1.45 16 4 C 0.07 1.99 2.74 30.60 0.08 2.07 16 5 H 0.05 1.76 6.22 -2.38 -0.01 1.74 16 6 C 0.12 2.90 5.73 86.38 0.49 3.40 16 7 N -0.46 -15.68 2.76 -514.84 -1.42 -17.10 16 8 C 0.23 7.73 7.59 137.64 1.04 8.77 16 9 C -0.09 -2.12 5.81 -11.54 -0.07 -2.19 16 10 C -0.15 -3.09 10.15 30.59 0.31 -2.78 16 11 C -0.14 -2.47 10.23 30.59 0.31 -2.15 16 12 N -0.33 -14.52 11.79 -49.53 -0.58 -15.10 16 13 N -0.36 -17.75 11.98 -58.00 -0.69 -18.45 16 14 C 0.36 15.62 5.09 260.11 1.32 16.94 16 15 N -0.46 -20.52 4.66 -710.99 -3.31 -23.83 16 16 C 0.05 2.09 9.14 127.69 1.17 3.26 16 17 C 0.24 12.78 1.96 44.17 0.09 12.86 16 18 H -0.03 -1.91 8.01 -2.39 -0.02 -1.93 16 19 C -0.10 -5.37 8.57 71.98 0.62 -4.75 16 20 C -0.52 -28.04 7.95 25.60 0.20 -27.84 16 21 H 0.08 3.88 6.40 -2.91 -0.02 3.86 16 22 C 0.01 0.67 5.30 84.66 0.45 1.12 16 23 N -0.92 -54.33 11.32 21.45 0.24 -54.09 16 24 Si 0.97 42.80 29.54 68.60 2.03 44.83 16 25 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 26 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 27 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 28 O -0.38 -10.46 9.89 -144.35 -1.43 -11.89 16 29 C 0.04 1.16 10.71 113.37 1.21 2.37 16 30 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 32 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.07 1.32 8.14 -2.39 -0.02 1.31 16 34 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 35 H 0.14 2.25 7.70 -2.39 -0.02 2.23 16 36 H 0.12 2.73 8.14 -2.39 -0.02 2.71 16 37 H 0.15 2.84 7.61 -2.38 -0.02 2.82 16 38 H 0.08 2.15 7.92 -2.39 -0.02 2.13 16 39 H 0.13 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.14 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.07 2.44 8.10 -2.39 -0.02 2.42 16 43 H 0.09 3.56 6.32 -2.38 -0.02 3.54 16 44 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 45 H 0.04 1.83 6.90 -2.39 -0.02 1.81 16 46 H -0.01 -0.43 7.22 -2.39 -0.02 -0.44 16 47 H 0.06 3.74 6.07 -2.39 -0.01 3.73 16 48 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 49 H 0.01 0.23 8.08 -2.39 -0.02 0.21 16 50 H 0.10 2.34 8.14 -2.38 -0.02 2.32 16 51 H 0.06 1.65 6.40 -2.39 -0.02 1.63 16 Total: -1.00 -75.72 410.48 3.36 -72.36 By element: Atomic # 1 Polarization: 19.31 SS G_CDS: 0.91 Total: 20.22 kcal Atomic # 6 Polarization: 5.33 SS G_CDS: 8.89 Total: 14.22 kcal Atomic # 7 Polarization: -122.80 SS G_CDS: -5.77 Total: -128.56 kcal Atomic # 8 Polarization: -20.36 SS G_CDS: -2.70 Total: -23.06 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -75.72 3.36 -72.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001391045511.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.682 kcal (2) G-P(sol) polarization free energy of solvation -75.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds