Wall clock time and date at job start Tue Mar 31 2020 22:51:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47205 * 2 1 4 4 C 1.50700 * 109.46719 * 120.00198 * 2 1 3 5 5 N 1.30294 * 126.34994 * 299.95269 * 4 2 1 6 6 N 1.28527 * 110.05474 * 180.02562 * 5 4 2 7 7 C 1.31214 * 109.86070 * 359.74813 * 6 5 4 8 8 N 1.38585 * 126.47353 * 180.25491 * 7 6 5 9 9 C 1.46898 * 111.00110 * 250.87715 * 8 7 6 10 10 C 1.46897 * 110.99924 * 14.83371 * 8 7 6 11 11 H 1.08993 * 109.47143 * 54.99381 * 10 8 7 12 12 C 1.53004 * 109.46852 * 294.99447 * 10 8 7 13 13 C 1.50699 * 109.47208 * 174.99962 * 10 8 7 14 14 H 1.08005 * 119.99716 * 5.16569 * 13 10 8 15 15 C 1.37873 * 120.00132 * 185.16719 * 13 10 8 16 16 N 1.31516 * 119.99799 * 5.54539 * 15 13 10 17 17 Si 1.86802 * 120.00093 * 185.54865 * 15 13 10 18 18 H 1.48491 * 109.47372 * 94.99498 * 17 15 13 19 19 H 1.48502 * 109.46939 * 215.00187 * 17 15 13 20 20 H 1.48508 * 109.46952 * 334.99600 * 17 15 13 21 21 N 1.36457 * 107.05237 * 0.40215 * 7 6 5 22 22 C 1.46501 * 127.13256 * 179.87359 * 21 7 6 23 23 C 1.53004 * 109.46916 * 93.35291 * 22 21 7 24 24 H 1.09000 * 109.57796 * 305.05765 * 23 22 21 25 25 C 1.53143 * 109.52264 * 184.89814 * 23 22 21 26 26 O 1.43075 * 109.20154 * 184.81792 * 25 23 22 27 27 C 1.43068 * 113.59527 * 57.91871 * 26 25 23 28 28 C 1.53141 * 109.15298 * 302.04722 * 27 26 25 29 29 O 1.43071 * 109.15182 * 55.30883 * 28 27 26 30 30 H 1.09003 * 109.47286 * 300.00270 * 1 2 3 31 31 H 1.09006 * 109.47080 * 59.99698 * 1 2 3 32 32 H 1.08999 * 109.47038 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47286 * 239.99730 * 2 1 3 34 34 H 1.09004 * 109.47011 * 179.97438 * 3 2 1 35 35 H 1.08996 * 109.47462 * 300.00057 * 3 2 1 36 36 H 1.09006 * 109.47098 * 60.00204 * 3 2 1 37 37 H 1.08996 * 109.47196 * 53.32356 * 9 8 7 38 38 H 1.08996 * 109.47285 * 173.33047 * 9 8 7 39 39 H 1.09004 * 109.47171 * 293.32376 * 9 8 7 40 40 H 1.09005 * 109.46833 * 64.96958 * 12 10 8 41 41 H 1.08997 * 109.47133 * 184.96326 * 12 10 8 42 42 H 1.09000 * 109.47219 * 304.97058 * 12 10 8 43 43 H 0.97004 * 119.99760 * 179.97438 * 16 15 13 44 44 H 1.08997 * 109.47515 * 333.34699 * 22 21 7 45 45 H 1.09000 * 109.46713 * 213.34499 * 22 21 7 46 46 H 1.08999 * 109.52352 * 64.88308 * 25 23 22 47 47 H 1.09003 * 109.52369 * 304.74879 * 25 23 22 48 48 H 1.08998 * 109.52750 * 61.94916 * 27 26 25 49 49 H 1.09004 * 109.52531 * 182.07658 * 27 26 25 50 50 H 1.09003 * 109.52753 * 175.21627 * 28 27 26 51 51 H 1.09003 * 109.52100 * 295.34405 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7105 1.2305 5 7 1.7956 -0.3744 2.4669 6 7 2.3770 -1.1963 3.2659 7 6 3.0165 -2.1114 2.5765 8 7 3.7537 -3.1657 3.0918 9 6 5.1914 -2.9608 2.8702 10 6 3.4637 -3.3632 4.5183 11 1 2.3905 -3.4940 4.6561 12 6 3.9342 -2.1403 5.3084 13 6 4.1869 -4.5893 5.0128 14 1 4.8658 -5.1164 4.3587 15 6 3.9820 -5.0383 6.3002 16 7 3.0757 -4.4636 7.0605 17 14 4.9915 -6.4627 6.9645 18 1 6.1602 -5.9346 7.7129 19 1 4.1513 -7.2834 7.8733 20 1 5.4653 -7.3027 5.8352 21 7 2.8214 -1.8269 1.2563 22 6 3.3437 -2.5676 0.1053 23 6 2.3080 -3.5972 -0.3512 24 1 2.0333 -4.2359 0.4883 25 6 2.8989 -4.4542 -1.4744 26 8 1.8900 -5.3380 -1.9725 27 6 0.7268 -4.6625 -2.4600 28 6 0.1349 -3.8067 -1.3364 29 8 1.1437 -2.9229 -0.8383 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 3.1301 1.4424 0.0005 35 1 1.6767 1.9564 -0.8899 36 1 1.6767 1.9563 0.8900 37 1 5.4833 -1.9849 3.2582 38 1 5.7531 -3.7397 3.3857 39 1 5.4044 -3.0057 1.8022 40 1 3.3491 -1.2695 5.0125 41 1 3.8000 -2.3229 6.3745 42 1 4.9885 -1.9572 5.1008 43 1 2.9312 -4.7797 7.9661 44 1 4.2635 -3.0788 0.3893 45 1 3.5501 -1.8741 -0.7098 46 1 3.7346 -5.0368 -1.0868 47 1 3.2477 -3.8084 -2.2803 48 1 1.0017 -4.0229 -3.2987 49 1 -0.0100 -5.3959 -2.7874 50 1 -0.7009 -3.2240 -1.7239 51 1 -0.2141 -4.4533 -0.5313 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001460373779.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:09 Heat of formation + Delta-G solvation = 6.372274 kcal Electronic energy + Delta-G solvation = -32145.661250 eV Core-core repulsion = 28082.579544 eV Total energy + Delta-G solvation = -4063.081706 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.47780 -40.12065 -37.38307 -36.45802 -35.33810 -34.87682 -32.71661 -31.78051 -29.06562 -28.85608 -28.55138 -27.08883 -26.42543 -25.26537 -25.11710 -23.72827 -22.92687 -21.59687 -21.29343 -19.77729 -19.12275 -17.26922 -17.03250 -16.79581 -16.23337 -16.03339 -15.85969 -15.43899 -15.27477 -14.99513 -14.82304 -14.46357 -14.11480 -13.73570 -13.58880 -13.38012 -13.07930 -12.92071 -12.57561 -12.38368 -12.28217 -12.07812 -11.81451 -11.65352 -11.57883 -11.31223 -11.15570 -11.09325 -11.05032 -10.92074 -10.86171 -10.76490 -10.68261 -10.33798 -10.18172 -10.00177 -9.78900 -9.64926 -9.34678 -8.82250 -8.73408 -8.38540 -7.39821 -6.03998 -4.08826 2.28071 2.65067 3.29134 3.33880 3.36350 3.38340 3.44274 3.49637 4.22676 4.36411 4.50528 4.55718 4.61193 4.65070 4.76763 4.79785 4.82406 4.95369 5.01137 5.10203 5.20398 5.23674 5.29722 5.39202 5.44462 5.51904 5.60130 5.66444 5.70347 5.74840 5.86974 5.93116 5.99382 6.05848 6.17796 6.33798 6.36867 6.47357 6.52156 6.67638 6.77275 6.83065 7.06289 7.15258 7.30397 7.51897 7.66540 7.76553 7.98852 8.23203 8.49781 8.93018 9.45196 9.54957 11.04502 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.011303 B = 0.004077 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2476.613917 B = 6865.315134 C = 8447.657930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.009 3.991 3 C -0.142 4.142 4 C 0.176 3.824 5 N -0.292 5.292 6 N -0.312 5.312 7 C 0.376 3.624 8 N -0.457 5.457 9 C 0.034 3.966 10 C 0.230 3.770 11 H 0.053 0.947 12 C -0.173 4.173 13 C -0.515 4.515 14 H 0.063 0.937 15 C 0.065 3.935 16 N -0.883 5.883 17 Si 0.896 3.104 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.274 1.274 21 N -0.481 5.481 22 C 0.125 3.875 23 C 0.040 3.960 24 H 0.085 0.915 25 C 0.037 3.963 26 O -0.374 6.374 27 C 0.024 3.976 28 C 0.026 3.974 29 O -0.367 6.367 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.082 0.918 34 H 0.050 0.950 35 H 0.060 0.940 36 H 0.067 0.933 37 H 0.032 0.968 38 H 0.097 0.903 39 H 0.044 0.956 40 H 0.056 0.944 41 H 0.073 0.927 42 H 0.020 0.980 43 H 0.262 0.738 44 H 0.114 0.886 45 H 0.095 0.905 46 H 0.110 0.890 47 H 0.062 0.938 48 H 0.060 0.940 49 H 0.104 0.896 50 H 0.105 0.895 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.705 4.576 -22.008 22.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.012 4.012 3 C -0.200 4.200 4 C -0.092 4.092 5 N -0.130 5.130 6 N -0.155 5.155 7 C 0.020 3.980 8 N -0.182 5.182 9 C -0.113 4.113 10 C 0.126 3.874 11 H 0.071 0.929 12 C -0.233 4.233 13 C -0.553 4.553 14 H 0.082 0.918 15 C -0.138 4.138 16 N -0.521 5.521 17 Si 0.724 3.276 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.198 1.198 21 N -0.177 5.177 22 C 0.001 3.999 23 C -0.019 4.019 24 H 0.103 0.897 25 C -0.041 4.041 26 O -0.292 6.292 27 C -0.053 4.053 28 C -0.051 4.051 29 O -0.286 6.286 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.101 0.899 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.050 0.950 38 H 0.116 0.884 39 H 0.062 0.938 40 H 0.075 0.925 41 H 0.092 0.908 42 H 0.039 0.961 43 H 0.072 0.928 44 H 0.132 0.868 45 H 0.113 0.887 46 H 0.128 0.872 47 H 0.080 0.920 48 H 0.078 0.922 49 H 0.122 0.878 50 H 0.123 0.877 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.444 4.878 -20.832 21.534 hybrid contribution 1.200 -1.111 -0.225 1.651 sum -1.244 3.767 -21.056 21.427 Atomic orbital electron populations 1.21715 0.93213 1.02416 1.01839 1.19352 0.96556 0.94509 0.90823 1.21827 1.00783 0.94866 1.02514 1.24446 0.97946 0.89352 0.97457 1.73919 1.19473 1.21879 0.97743 1.74856 1.14842 1.02228 1.23618 1.23222 1.00500 0.93704 0.80533 1.59400 1.05255 1.30123 1.23392 1.22394 0.87506 1.02020 0.99398 1.19337 0.98351 0.93972 0.75771 0.92947 1.22496 0.97932 0.99050 1.03793 1.21027 1.26238 1.10573 0.97494 0.91842 1.24893 0.95132 0.96862 0.96900 1.69984 1.31731 1.41559 1.08794 0.86520 0.80040 0.82126 0.78928 1.20732 1.21221 1.19833 1.46075 1.41088 1.24140 1.06381 1.21713 0.96364 0.94395 0.87410 1.23160 0.87256 0.94425 0.97093 0.89699 1.23142 0.91437 0.93794 0.95716 1.88138 1.27509 1.32502 1.81099 1.23265 0.88689 0.97293 0.96059 1.23216 0.91292 0.93996 0.96574 1.88107 1.26963 1.32293 1.81216 0.91866 0.92471 0.92182 0.89941 0.93041 0.92085 0.91400 0.94956 0.88425 0.93769 0.92533 0.90837 0.96073 0.92800 0.86817 0.88689 0.87206 0.91979 0.92176 0.87837 0.87718 0.92002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.55 9.18 37.16 0.34 -1.20 16 2 C 0.01 0.11 2.71 -91.77 -0.25 -0.14 16 3 C -0.14 -1.54 9.18 37.16 0.34 -1.20 16 4 C 0.18 2.93 6.32 -154.02 -0.97 1.96 16 5 N -0.29 -6.06 12.18 32.99 0.40 -5.65 16 6 N -0.31 -7.25 8.98 30.32 0.27 -6.97 16 7 C 0.38 7.82 6.65 -318.87 -2.12 5.70 16 8 N -0.46 -9.82 4.77 -176.09 -0.84 -10.67 16 9 C 0.03 0.62 8.51 60.06 0.51 1.13 16 10 C 0.23 5.92 1.96 -68.86 -0.13 5.78 16 11 H 0.05 1.57 8.09 -51.93 -0.42 1.15 16 12 C -0.17 -4.42 8.45 37.16 0.31 -4.10 16 13 C -0.51 -13.75 7.84 -34.44 -0.27 -14.02 16 14 H 0.06 1.64 6.63 -52.48 -0.35 1.29 16 15 C 0.07 1.78 5.22 -17.82 -0.09 1.69 16 16 N -0.88 -25.55 11.95 55.43 0.66 -24.88 16 17 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 21 N -0.48 -7.95 2.78 -114.08 -0.32 -8.27 16 22 C 0.13 1.49 5.47 -4.04 -0.02 1.47 16 23 C 0.04 0.47 3.09 -26.66 -0.08 0.39 16 24 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 25 C 0.04 0.35 6.33 37.23 0.24 0.59 16 26 O -0.37 -4.13 10.85 -48.80 -0.53 -4.66 16 27 C 0.02 0.20 7.05 37.23 0.26 0.46 16 28 C 0.03 0.24 7.05 37.23 0.26 0.51 16 29 O -0.37 -4.23 8.24 -48.80 -0.40 -4.63 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.75 7.47 -51.93 -0.39 0.36 16 33 H 0.08 0.89 6.34 -51.93 -0.33 0.57 16 34 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.03 0.60 6.75 -51.93 -0.35 0.25 16 38 H 0.10 1.84 6.17 -51.93 -0.32 1.52 16 39 H 0.04 0.63 6.04 -51.93 -0.31 0.32 16 40 H 0.06 1.45 5.52 -51.93 -0.29 1.16 16 41 H 0.07 2.04 6.62 -51.93 -0.34 1.70 16 42 H 0.02 0.49 6.37 -51.93 -0.33 0.16 16 43 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 44 H 0.11 1.25 5.88 -51.93 -0.31 0.95 16 45 H 0.09 0.88 7.39 -51.93 -0.38 0.50 16 46 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 47 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 48 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 50 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 51 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 390.91 15.07 5.89 5.89 Total: -1.00 -33.12 390.91 -9.89 -43.01 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -8.33 Total: 1.89 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: -1.68 Total: -1.00 kcal Atomic # 7 Polarization: -56.62 SS G_CDS: 0.18 Total: -56.45 kcal Atomic # 8 Polarization: -8.36 SS G_CDS: -0.93 Total: -9.29 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.12 -9.89 -43.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460373779.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.384 kcal (2) G-P(sol) polarization free energy of solvation -33.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds