Wall clock time and date at job start Tue Mar 31 2020 22:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47205 * 2 1 4 4 C 1.50700 * 109.46719 * 120.00198 * 2 1 3 5 5 N 1.30294 * 126.34994 * 299.95269 * 4 2 1 6 6 N 1.28527 * 110.05474 * 180.02562 * 5 4 2 7 7 C 1.31214 * 109.86070 * 359.74813 * 6 5 4 8 8 N 1.38585 * 126.47353 * 180.25491 * 7 6 5 9 9 C 1.46898 * 111.00110 * 250.87715 * 8 7 6 10 10 C 1.46897 * 110.99924 * 14.83371 * 8 7 6 11 11 H 1.08993 * 109.47143 * 54.99381 * 10 8 7 12 12 C 1.53004 * 109.46852 * 294.99447 * 10 8 7 13 13 C 1.50699 * 109.47208 * 174.99962 * 10 8 7 14 14 H 1.08005 * 119.99716 * 5.16569 * 13 10 8 15 15 C 1.37873 * 120.00132 * 185.16719 * 13 10 8 16 16 N 1.31516 * 119.99799 * 5.54539 * 15 13 10 17 17 Si 1.86802 * 120.00093 * 185.54865 * 15 13 10 18 18 H 1.48491 * 109.47372 * 94.99498 * 17 15 13 19 19 H 1.48502 * 109.46939 * 215.00187 * 17 15 13 20 20 H 1.48508 * 109.46952 * 334.99600 * 17 15 13 21 21 N 1.36457 * 107.05237 * 0.40215 * 7 6 5 22 22 C 1.46501 * 127.13256 * 179.87359 * 21 7 6 23 23 C 1.53004 * 109.46916 * 93.35291 * 22 21 7 24 24 H 1.09000 * 109.57796 * 305.05765 * 23 22 21 25 25 C 1.53143 * 109.52264 * 184.89814 * 23 22 21 26 26 O 1.43075 * 109.20154 * 184.81792 * 25 23 22 27 27 C 1.43068 * 113.59527 * 57.91871 * 26 25 23 28 28 C 1.53141 * 109.15298 * 302.04722 * 27 26 25 29 29 O 1.43071 * 109.15182 * 55.30883 * 28 27 26 30 30 H 1.09003 * 109.47286 * 300.00270 * 1 2 3 31 31 H 1.09006 * 109.47080 * 59.99698 * 1 2 3 32 32 H 1.08999 * 109.47038 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47286 * 239.99730 * 2 1 3 34 34 H 1.09004 * 109.47011 * 179.97438 * 3 2 1 35 35 H 1.08996 * 109.47462 * 300.00057 * 3 2 1 36 36 H 1.09006 * 109.47098 * 60.00204 * 3 2 1 37 37 H 1.08996 * 109.47196 * 53.32356 * 9 8 7 38 38 H 1.08996 * 109.47285 * 173.33047 * 9 8 7 39 39 H 1.09004 * 109.47171 * 293.32376 * 9 8 7 40 40 H 1.09005 * 109.46833 * 64.96958 * 12 10 8 41 41 H 1.08997 * 109.47133 * 184.96326 * 12 10 8 42 42 H 1.09000 * 109.47219 * 304.97058 * 12 10 8 43 43 H 0.97004 * 119.99760 * 179.97438 * 16 15 13 44 44 H 1.08997 * 109.47515 * 333.34699 * 22 21 7 45 45 H 1.09000 * 109.46713 * 213.34499 * 22 21 7 46 46 H 1.08999 * 109.52352 * 64.88308 * 25 23 22 47 47 H 1.09003 * 109.52369 * 304.74879 * 25 23 22 48 48 H 1.08998 * 109.52750 * 61.94916 * 27 26 25 49 49 H 1.09004 * 109.52531 * 182.07658 * 27 26 25 50 50 H 1.09003 * 109.52753 * 175.21627 * 28 27 26 51 51 H 1.09003 * 109.52100 * 295.34405 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7105 1.2305 5 7 1.7956 -0.3744 2.4669 6 7 2.3770 -1.1963 3.2659 7 6 3.0165 -2.1114 2.5765 8 7 3.7537 -3.1657 3.0918 9 6 5.1914 -2.9608 2.8702 10 6 3.4637 -3.3632 4.5183 11 1 2.3905 -3.4940 4.6561 12 6 3.9342 -2.1403 5.3084 13 6 4.1869 -4.5893 5.0128 14 1 4.8658 -5.1164 4.3587 15 6 3.9820 -5.0383 6.3002 16 7 3.0757 -4.4636 7.0605 17 14 4.9915 -6.4627 6.9645 18 1 6.1602 -5.9346 7.7129 19 1 4.1513 -7.2834 7.8733 20 1 5.4653 -7.3027 5.8352 21 7 2.8214 -1.8269 1.2563 22 6 3.3437 -2.5676 0.1053 23 6 2.3080 -3.5972 -0.3512 24 1 2.0333 -4.2359 0.4883 25 6 2.8989 -4.4542 -1.4744 26 8 1.8900 -5.3380 -1.9725 27 6 0.7268 -4.6625 -2.4600 28 6 0.1349 -3.8067 -1.3364 29 8 1.1437 -2.9229 -0.8383 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 3.1301 1.4424 0.0005 35 1 1.6767 1.9564 -0.8899 36 1 1.6767 1.9563 0.8900 37 1 5.4833 -1.9849 3.2582 38 1 5.7531 -3.7397 3.3857 39 1 5.4044 -3.0057 1.8022 40 1 3.3491 -1.2695 5.0125 41 1 3.8000 -2.3229 6.3745 42 1 4.9885 -1.9572 5.1008 43 1 2.9312 -4.7797 7.9661 44 1 4.2635 -3.0788 0.3893 45 1 3.5501 -1.8741 -0.7098 46 1 3.7346 -5.0368 -1.0868 47 1 3.2477 -3.8084 -2.2803 48 1 1.0017 -4.0229 -3.2987 49 1 -0.0100 -5.3959 -2.7874 50 1 -0.7009 -3.2240 -1.7239 51 1 -0.2141 -4.4533 -0.5313 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001460373779.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:07 Heat of formation + Delta-G solvation = -14.243539 kcal Electronic energy + Delta-G solvation = -32146.555219 eV Core-core repulsion = 28082.579544 eV Total energy + Delta-G solvation = -4063.975675 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 2.35 seconds Orbital eigenvalues (eV) -43.93199 -40.92875 -39.11321 -37.34850 -36.41944 -36.03217 -34.67873 -32.78785 -30.92023 -30.12870 -29.71540 -27.98124 -27.44868 -27.23297 -26.69802 -24.67140 -24.15055 -23.19359 -22.22582 -21.21365 -20.54493 -18.52173 -18.10357 -17.87589 -17.71903 -17.17833 -17.04254 -16.83127 -16.48871 -16.17811 -15.99539 -15.88726 -15.22026 -15.10339 -14.99134 -14.53416 -14.34256 -13.95549 -13.78906 -13.66672 -13.48491 -13.20372 -13.06561 -12.94256 -12.92266 -12.68790 -12.67584 -12.49320 -12.45205 -12.16450 -12.12608 -12.07440 -11.92098 -11.91530 -11.71056 -11.50465 -11.34467 -10.95663 -10.79936 -10.51477 -10.35502 -10.17668 -9.06174 -8.14483 -6.27072 0.88478 1.33840 1.44700 1.44929 1.56072 1.97614 2.41444 2.50377 2.76150 3.01475 3.18342 3.34968 3.53663 3.64047 3.75862 3.88796 3.98313 4.05118 4.07196 4.13377 4.25421 4.29222 4.32454 4.44960 4.51732 4.53480 4.57486 4.64715 4.68039 4.74421 4.84574 4.85956 4.86543 4.93236 5.00201 5.02457 5.07278 5.11557 5.12410 5.27092 5.41844 5.43015 5.51944 5.59513 5.65193 5.87629 5.93268 6.00247 6.09989 6.18467 6.63309 6.83106 7.41215 7.94515 8.94893 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.011303 B = 0.004077 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2476.613917 B = 6865.315134 C = 8447.657930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.010 3.990 3 C -0.137 4.137 4 C 0.199 3.801 5 N -0.337 5.337 6 N -0.363 5.363 7 C 0.359 3.641 8 N -0.458 5.458 9 C 0.036 3.964 10 C 0.244 3.756 11 H -0.004 1.004 12 C -0.155 4.155 13 C -0.522 4.522 14 H 0.075 0.925 15 C 0.011 3.989 16 N -0.923 5.923 17 Si 0.967 3.033 18 H -0.274 1.274 19 H -0.289 1.289 20 H -0.259 1.259 21 N -0.472 5.472 22 C 0.117 3.883 23 C 0.046 3.954 24 H 0.038 0.962 25 C 0.042 3.958 26 O -0.399 6.399 27 C 0.025 3.975 28 C 0.022 3.978 29 O -0.375 6.375 30 H 0.040 0.960 31 H 0.093 0.907 32 H 0.046 0.954 33 H 0.109 0.891 34 H 0.051 0.949 35 H 0.096 0.904 36 H 0.045 0.955 37 H 0.023 0.977 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.050 0.950 41 H 0.043 0.957 42 H 0.033 0.967 43 H 0.262 0.738 44 H 0.125 0.875 45 H 0.135 0.865 46 H 0.117 0.883 47 H 0.092 0.908 48 H 0.081 0.919 49 H 0.119 0.881 50 H 0.130 0.870 51 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.231 4.476 -26.083 26.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.011 4.011 3 C -0.195 4.195 4 C -0.071 4.071 5 N -0.174 5.174 6 N -0.206 5.206 7 C 0.001 3.999 8 N -0.182 5.182 9 C -0.111 4.111 10 C 0.137 3.863 11 H 0.014 0.986 12 C -0.214 4.214 13 C -0.560 4.560 14 H 0.093 0.907 15 C -0.188 4.188 16 N -0.561 5.561 17 Si 0.792 3.208 18 H -0.200 1.200 19 H -0.215 1.215 20 H -0.183 1.183 21 N -0.167 5.167 22 C -0.005 4.005 23 C -0.014 4.014 24 H 0.057 0.943 25 C -0.035 4.035 26 O -0.318 6.318 27 C -0.051 4.051 28 C -0.054 4.054 29 O -0.295 6.295 30 H 0.060 0.940 31 H 0.112 0.888 32 H 0.066 0.934 33 H 0.127 0.873 34 H 0.071 0.929 35 H 0.114 0.886 36 H 0.064 0.936 37 H 0.041 0.959 38 H 0.109 0.891 39 H 0.107 0.893 40 H 0.068 0.932 41 H 0.062 0.938 42 H 0.052 0.948 43 H 0.071 0.929 44 H 0.143 0.857 45 H 0.153 0.847 46 H 0.135 0.865 47 H 0.110 0.890 48 H 0.100 0.900 49 H 0.137 0.863 50 H 0.147 0.853 51 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -0.959 4.779 -24.956 25.428 hybrid contribution 0.621 -1.015 0.916 1.501 sum -0.338 3.764 -24.041 24.336 Atomic orbital electron populations 1.21686 0.92630 1.01818 1.02578 1.19686 0.96918 0.95191 0.89298 1.21809 1.00833 0.93668 1.03196 1.25419 0.95446 0.88395 0.97794 1.73816 1.21367 1.22774 0.99452 1.74681 1.16210 1.03800 1.25916 1.23086 1.00854 0.93601 0.82324 1.59269 1.07196 1.31040 1.20673 1.22484 0.85217 1.01147 1.02261 1.18871 0.94842 0.93929 0.78616 0.98587 1.22277 0.98483 0.98964 1.01711 1.21345 1.26092 1.10783 0.97825 0.90732 1.25811 0.96064 0.99668 0.97240 1.70154 1.33519 1.43403 1.09073 0.85401 0.78278 0.78705 0.78390 1.19995 1.21477 1.18313 1.46246 1.40520 1.24011 1.05947 1.22167 0.96555 0.95102 0.86684 1.23002 0.87617 0.94048 0.96708 0.94338 1.23191 0.91062 0.93748 0.95512 1.88109 1.28553 1.33859 1.81250 1.23411 0.88199 0.97716 0.95793 1.23382 0.91618 0.94121 0.96304 1.88066 1.27257 1.32894 1.81268 0.94047 0.88796 0.93442 0.87260 0.92942 0.88573 0.93554 0.95855 0.89058 0.89266 0.93151 0.93818 0.94792 0.92931 0.85726 0.84746 0.86536 0.88956 0.90039 0.86346 0.85257 0.94565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.72 9.18 71.98 0.66 -2.06 16 2 C 0.01 0.22 2.71 -11.54 -0.03 0.18 16 3 C -0.14 -2.58 9.18 71.98 0.66 -1.92 16 4 C 0.20 6.52 6.32 137.64 0.87 7.39 16 5 N -0.34 -14.49 12.18 -49.54 -0.60 -15.09 16 6 N -0.36 -17.76 8.98 -58.00 -0.52 -18.28 16 7 C 0.36 15.36 6.65 260.11 1.73 17.09 16 8 N -0.46 -20.15 4.77 -711.02 -3.39 -23.55 16 9 C 0.04 1.26 8.51 127.69 1.09 2.35 16 10 C 0.24 13.17 1.96 44.17 0.09 13.26 16 11 H 0.00 -0.25 8.09 -2.39 -0.02 -0.27 16 12 C -0.15 -8.32 8.45 71.98 0.61 -7.71 16 13 C -0.52 -28.56 7.84 25.60 0.20 -28.36 16 14 H 0.07 3.83 6.63 -2.91 -0.02 3.81 16 15 C 0.01 0.64 5.22 84.65 0.44 1.08 16 16 N -0.92 -55.75 11.95 21.45 0.26 -55.49 16 17 Si 0.97 43.47 29.54 68.60 2.03 45.49 16 18 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 19 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 20 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 21 N -0.47 -15.28 2.78 -514.84 -1.43 -16.71 16 22 C 0.12 2.46 5.47 86.38 0.47 2.93 16 23 C 0.05 1.00 3.09 30.64 0.09 1.10 16 24 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 25 C 0.04 0.68 6.33 72.03 0.46 1.13 16 26 O -0.40 -7.93 10.85 -136.00 -1.48 -9.40 16 27 C 0.03 0.35 7.05 72.03 0.51 0.85 16 28 C 0.02 0.38 7.05 72.03 0.51 0.89 16 29 O -0.38 -7.89 8.24 -136.00 -1.12 -9.01 16 30 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 32 H 0.05 1.12 7.47 -2.39 -0.02 1.10 16 33 H 0.11 1.85 6.34 -2.39 -0.02 1.83 16 34 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 35 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 37 H 0.02 0.86 6.75 -2.39 -0.02 0.84 16 38 H 0.09 3.36 6.17 -2.39 -0.01 3.34 16 39 H 0.09 2.33 6.04 -2.38 -0.01 2.31 16 40 H 0.05 2.75 5.52 -2.38 -0.01 2.74 16 41 H 0.04 2.56 6.62 -2.39 -0.02 2.55 16 42 H 0.03 1.67 6.37 -2.39 -0.02 1.65 16 43 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 44 H 0.12 2.34 5.88 -2.39 -0.01 2.33 16 45 H 0.13 1.82 7.39 -2.39 -0.02 1.81 16 46 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 47 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 48 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 49 H 0.12 1.24 8.14 -2.38 -0.02 1.22 16 50 H 0.13 1.53 8.14 -2.39 -0.02 1.51 16 51 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -78.79 390.91 3.02 -75.78 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: 0.92 Total: 18.05 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: 8.35 Total: 8.22 kcal Atomic # 7 Polarization: -123.44 SS G_CDS: -5.69 Total: -129.13 kcal Atomic # 8 Polarization: -15.82 SS G_CDS: -2.60 Total: -18.41 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.49 kcal Total: -78.79 3.02 -75.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460373779.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.534 kcal (2) G-P(sol) polarization free energy of solvation -78.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.35 seconds