Wall clock time and date at job start Tue Mar 31 2020 22:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47153 * 2 1 4 4 C 1.50700 * 109.47021 * 239.99941 * 2 1 3 5 5 N 1.30299 * 126.34733 * 59.69018 * 4 2 1 6 6 N 1.28523 * 110.05439 * 179.82630 * 5 4 2 7 7 C 1.31216 * 109.86080 * 0.44696 * 6 5 4 8 8 N 1.38584 * 126.47926 * 179.69891 * 7 6 5 9 9 C 1.46899 * 111.00027 * 251.77543 * 8 7 6 10 10 C 1.46908 * 110.99244 * 15.72332 * 8 7 6 11 11 H 1.08997 * 109.47340 * 55.00292 * 10 8 7 12 12 C 1.52998 * 109.47083 * 294.99794 * 10 8 7 13 13 C 1.50706 * 109.46358 * 175.00293 * 10 8 7 14 14 H 1.07997 * 120.00250 * 5.55507 * 13 10 8 15 15 C 1.37877 * 119.99441 * 185.54742 * 13 10 8 16 16 N 1.31519 * 120.00278 * 6.21973 * 15 13 10 17 17 Si 1.86801 * 119.99966 * 186.21647 * 15 13 10 18 18 H 1.48497 * 109.47187 * 94.99765 * 17 15 13 19 19 H 1.48505 * 109.46930 * 214.99706 * 17 15 13 20 20 H 1.48506 * 109.46919 * 334.99450 * 17 15 13 21 21 N 1.36454 * 107.05370 * 359.73345 * 7 6 5 22 22 C 1.46500 * 127.14011 * 179.97438 * 21 7 6 23 23 C 1.53007 * 109.47111 * 89.72758 * 22 21 7 24 24 O 1.42890 * 110.45558 * 60.66835 * 23 22 21 25 25 C 1.54512 * 110.51102 * 183.42508 * 23 22 21 26 26 C 1.54477 * 104.06203 * 118.64493 * 25 23 22 27 27 O 1.44420 * 104.80495 * 23.97761 * 26 25 23 28 28 C 1.44426 * 105.27640 * 319.48682 * 27 26 25 29 29 H 1.08998 * 109.47186 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46535 * 300.00126 * 1 2 3 31 31 H 1.08998 * 109.47387 * 59.99647 * 1 2 3 32 32 H 1.08998 * 109.47387 * 120.00353 * 2 1 3 33 33 H 1.09001 * 109.46914 * 299.99759 * 3 2 1 34 34 H 1.08994 * 109.47676 * 60.00162 * 3 2 1 35 35 H 1.09003 * 109.46864 * 180.02562 * 3 2 1 36 36 H 1.09001 * 109.47634 * 53.17707 * 9 8 7 37 37 H 1.09000 * 109.47373 * 173.17870 * 9 8 7 38 38 H 1.08998 * 109.46825 * 293.17870 * 9 8 7 39 39 H 1.08999 * 109.47222 * 185.37232 * 12 10 8 40 40 H 1.08995 * 109.47754 * 305.37743 * 12 10 8 41 41 H 1.09006 * 109.46875 * 65.38076 * 12 10 8 42 42 H 0.96999 * 120.00280 * 180.02562 * 16 15 13 43 43 H 1.08997 * 109.47792 * 209.72888 * 22 21 7 44 44 H 1.09006 * 109.47208 * 329.72865 * 22 21 7 45 45 H 0.96698 * 114.00225 * 179.97438 * 24 23 22 46 46 H 1.09001 * 110.50669 * 237.29060 * 25 23 22 47 47 H 1.09003 * 110.51178 * 359.97438 * 25 23 22 48 48 H 1.09002 * 110.37190 * 265.14267 * 26 25 23 49 49 H 1.08998 * 110.36823 * 142.81056 * 26 25 23 50 50 H 1.09001 * 110.37127 * 281.68071 * 28 27 26 51 51 H 1.08996 * 110.46701 * 159.39263 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 7 1.7903 -0.3781 -2.4669 6 7 2.3761 -1.1968 -3.2660 7 6 3.0207 -2.1084 -2.5766 8 7 3.7629 -3.1592 -3.0918 9 6 3.0732 -4.4402 -2.8887 10 6 4.0645 -2.9433 -4.5133 11 1 4.5582 -1.9796 -4.6377 12 6 2.7636 -2.9576 -5.3185 13 6 4.9725 -4.0404 -5.0062 14 1 5.2212 -4.8676 -4.3580 15 6 5.4857 -3.9880 -6.2849 16 7 5.2839 -2.9241 -7.0314 17 14 6.4676 -5.4279 -6.9570 18 1 5.5699 -6.3193 -7.7346 19 1 7.5482 -4.9208 -7.8405 20 1 7.0655 -6.1883 -5.8301 21 7 2.8216 -1.8267 -1.2564 22 6 3.3444 -2.5670 -0.1054 23 6 4.7078 -1.9968 0.2912 24 8 4.5865 -0.6207 0.6563 25 6 5.3208 -2.8154 1.4495 26 6 6.6315 -3.3795 0.8578 27 8 6.9728 -2.4733 -0.2137 28 6 5.7207 -2.1633 -0.8633 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8934 -0.5139 0.8899 33 1 1.6767 1.9563 -0.8900 34 1 1.6768 1.9564 0.8899 35 1 3.1300 1.4424 -0.0005 36 1 2.0601 -4.3745 -3.2856 37 1 3.6157 -5.2311 -3.4065 38 1 3.0318 -4.6655 -1.8230 39 1 2.9938 -2.8931 -6.3820 40 1 2.2230 -3.8829 -5.1193 41 1 2.1471 -2.1068 -5.0281 42 1 5.6446 -2.8874 -7.9311 43 1 2.6534 -2.4721 0.7322 44 1 3.4534 -3.6191 -0.3690 45 1 5.4211 -0.2079 0.9173 46 1 5.5331 -2.1705 2.3022 47 1 4.6524 -3.6260 1.7398 48 1 6.4702 -4.3845 0.4678 49 1 7.4169 -3.3864 1.6136 50 1 5.4196 -2.9818 -1.5172 51 1 5.8049 -1.2366 -1.4308 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001460376963.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:05 Heat of formation + Delta-G solvation = 4.730475 kcal Electronic energy + Delta-G solvation = -32767.108630 eV Core-core repulsion = 28703.955730 eV Total energy + Delta-G solvation = -4063.152900 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.54195 -39.98688 -37.42800 -36.35833 -35.28695 -34.46987 -32.67788 -31.46526 -29.18421 -29.03980 -28.57605 -27.08715 -26.44335 -25.16064 -25.11745 -23.25803 -22.74504 -21.56362 -20.98266 -19.71848 -19.11282 -17.49309 -17.12409 -16.28170 -16.11602 -15.90237 -15.46430 -15.20233 -14.85679 -14.65957 -14.54145 -14.43678 -14.00017 -13.79047 -13.42847 -13.39407 -13.05941 -12.80433 -12.47687 -12.35746 -12.09109 -11.75283 -11.62570 -11.58748 -11.54451 -11.38325 -11.28392 -11.16232 -11.07806 -10.96789 -10.92830 -10.73305 -10.45348 -10.32423 -10.19097 -10.00994 -9.77063 -9.64628 -9.54745 -8.83301 -8.73848 -8.39046 -7.44130 -6.04894 -4.09547 2.26081 2.62961 3.28895 3.36321 3.38057 3.46401 3.74144 3.98537 4.18951 4.35997 4.42123 4.54299 4.60755 4.64495 4.70268 4.91717 5.00892 5.04147 5.12792 5.20788 5.29166 5.39347 5.43526 5.52951 5.63339 5.66383 5.67207 5.73542 5.80877 5.88482 5.93212 5.98041 6.03591 6.15177 6.19389 6.33605 6.36725 6.46144 6.49650 6.72869 6.80620 7.03257 7.13177 7.28285 7.38341 7.49433 7.63972 7.75185 7.96383 8.20824 8.47082 8.92057 9.42836 9.54264 11.03668 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.011431 B = 0.004738 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2448.926840 B = 5908.120631 C = 7559.327283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.008 3.992 3 C -0.134 4.134 4 C 0.179 3.821 5 N -0.292 5.292 6 N -0.310 5.310 7 C 0.372 3.628 8 N -0.457 5.457 9 C 0.032 3.968 10 C 0.230 3.770 11 H 0.053 0.947 12 C -0.173 4.173 13 C -0.515 4.515 14 H 0.063 0.937 15 C 0.066 3.934 16 N -0.882 5.882 17 Si 0.895 3.105 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.274 1.274 21 N -0.479 5.479 22 C 0.134 3.866 23 C 0.090 3.910 24 O -0.544 6.544 25 C -0.179 4.179 26 C 0.043 3.957 27 O -0.372 6.372 28 C 0.016 3.984 29 H 0.050 0.950 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.062 0.938 34 H 0.056 0.944 35 H 0.062 0.938 36 H 0.033 0.967 37 H 0.098 0.902 38 H 0.043 0.957 39 H 0.071 0.929 40 H 0.020 0.980 41 H 0.057 0.943 42 H 0.262 0.738 43 H 0.096 0.904 44 H 0.110 0.890 45 H 0.381 0.619 46 H 0.087 0.913 47 H 0.085 0.915 48 H 0.064 0.936 49 H 0.091 0.909 50 H 0.106 0.894 51 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.886 0.659 20.870 21.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.013 4.013 3 C -0.193 4.193 4 C -0.089 4.089 5 N -0.131 5.131 6 N -0.153 5.153 7 C 0.017 3.983 8 N -0.182 5.182 9 C -0.115 4.115 10 C 0.126 3.874 11 H 0.071 0.929 12 C -0.233 4.233 13 C -0.554 4.554 14 H 0.081 0.919 15 C -0.137 4.137 16 N -0.520 5.520 17 Si 0.723 3.277 18 H -0.208 1.208 19 H -0.212 1.212 20 H -0.198 1.198 21 N -0.175 5.175 22 C 0.010 3.990 23 C 0.047 3.953 24 O -0.350 6.350 25 C -0.218 4.218 26 C -0.034 4.034 27 O -0.291 6.291 28 C -0.061 4.061 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.099 0.901 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.052 0.948 37 H 0.116 0.884 38 H 0.061 0.939 39 H 0.090 0.910 40 H 0.039 0.961 41 H 0.076 0.924 42 H 0.072 0.928 43 H 0.114 0.886 44 H 0.128 0.872 45 H 0.230 0.770 46 H 0.106 0.894 47 H 0.104 0.896 48 H 0.082 0.918 49 H 0.109 0.891 50 H 0.124 0.876 51 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -4.338 1.426 19.497 20.025 hybrid contribution 0.970 -1.575 0.444 1.902 sum -3.368 -0.149 19.941 20.224 Atomic orbital electron populations 1.21830 0.93765 1.01861 1.02569 1.19350 0.95407 0.95759 0.90740 1.21719 1.01826 0.93878 1.01842 1.24446 0.97756 0.89261 0.97450 1.73935 1.19877 1.21526 0.97720 1.74854 1.11618 1.05171 1.23628 1.23201 0.96353 0.98215 0.80534 1.59441 1.36739 0.97999 1.23975 1.22411 0.97859 0.91849 0.99415 1.19344 0.93338 0.98896 0.75810 0.92863 1.22502 0.98380 0.98732 1.03674 1.21005 1.29059 1.07037 0.98260 0.91871 1.24881 0.96025 0.95826 0.96949 1.69981 1.45262 1.27076 1.09650 0.86537 0.79674 0.82508 0.78994 1.20765 1.21221 1.19837 1.46066 1.41229 1.23819 1.06353 1.21778 0.93454 0.96178 0.87563 1.22918 0.95241 0.83171 0.93958 1.86519 1.37009 1.22665 1.88811 1.23619 0.98340 1.01157 0.98662 1.23395 0.95883 0.94112 0.90042 1.89180 1.28865 1.64759 1.46259 1.24441 0.82486 1.04662 0.94516 0.93063 0.92059 0.91356 0.90135 0.91875 0.92467 0.91923 0.94834 0.88351 0.93868 0.90977 0.96061 0.92445 0.92785 0.88603 0.87247 0.77032 0.89409 0.89590 0.91798 0.89065 0.87648 0.88567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.18 37.16 0.34 -1.20 16 2 C 0.01 0.10 3.12 -91.77 -0.29 -0.18 16 3 C -0.13 -1.57 9.18 37.16 0.34 -1.23 16 4 C 0.18 2.94 6.39 -154.01 -0.98 1.95 16 5 N -0.29 -5.97 12.18 32.99 0.40 -5.57 16 6 N -0.31 -7.03 8.97 30.32 0.27 -6.76 16 7 C 0.37 7.47 5.92 -318.87 -1.89 5.58 16 8 N -0.46 -9.38 2.97 -176.07 -0.52 -9.90 16 9 C 0.03 0.57 8.54 60.06 0.51 1.08 16 10 C 0.23 5.77 1.96 -68.86 -0.14 5.63 16 11 H 0.05 1.56 8.08 -51.93 -0.42 1.14 16 12 C -0.17 -4.34 8.46 37.16 0.31 -4.03 16 13 C -0.52 -13.51 7.85 -34.44 -0.27 -13.78 16 14 H 0.06 1.60 6.61 -52.49 -0.35 1.25 16 15 C 0.07 1.80 5.21 -17.82 -0.09 1.70 16 16 N -0.88 -25.33 12.01 55.43 0.67 -24.66 16 17 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 18 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 21 N -0.48 -7.68 2.57 -114.08 -0.29 -7.97 16 22 C 0.13 1.59 4.77 -4.04 -0.02 1.57 16 23 C 0.09 1.01 1.21 -89.05 -0.11 0.90 16 24 O -0.54 -5.99 12.06 -35.23 -0.42 -6.41 16 25 C -0.18 -1.48 6.52 -25.16 -0.16 -1.64 16 26 C 0.04 0.43 7.63 37.93 0.29 0.72 16 27 O -0.37 -5.45 11.65 -35.23 -0.41 -5.86 16 28 C 0.02 0.24 6.06 37.93 0.23 0.47 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.08 0.87 6.87 -51.93 -0.36 0.52 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.79 7.67 -51.93 -0.40 0.39 16 36 H 0.03 0.61 6.75 -51.93 -0.35 0.26 16 37 H 0.10 1.81 6.16 -51.93 -0.32 1.49 16 38 H 0.04 0.61 6.10 -51.93 -0.32 0.29 16 39 H 0.07 1.98 6.67 -51.93 -0.35 1.63 16 40 H 0.02 0.49 6.35 -51.93 -0.33 0.16 16 41 H 0.06 1.45 5.51 -51.93 -0.29 1.16 16 42 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 43 H 0.10 0.91 7.22 -51.93 -0.37 0.53 16 44 H 0.11 1.21 5.97 -51.93 -0.31 0.90 16 45 H 0.38 3.26 9.04 45.56 0.41 3.67 16 46 H 0.09 0.62 8.00 -51.93 -0.42 0.20 16 47 H 0.09 0.56 7.73 -51.93 -0.40 0.16 16 48 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 49 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 50 H 0.11 1.83 5.87 -51.93 -0.30 1.53 16 51 H 0.10 1.71 8.09 -51.93 -0.42 1.29 16 LS Contribution 389.28 15.07 5.87 5.87 Total: -1.00 -32.29 389.28 -8.77 -41.06 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -7.38 Total: 6.80 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: -1.92 Total: -2.45 kcal Atomic # 7 Polarization: -55.38 SS G_CDS: 0.52 Total: -54.86 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: -0.84 Total: -12.27 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.29 -8.77 -41.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460376963.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.790 kcal (2) G-P(sol) polarization free energy of solvation -32.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds