Wall clock time and date at job start Tue Mar 31 2020 22:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47145 * 2 1 4 4 C 1.50700 * 109.47537 * 120.00078 * 2 1 3 5 5 N 1.30297 * 126.34524 * 300.15749 * 4 2 1 6 6 N 1.28526 * 110.05331 * 180.30938 * 5 4 2 7 7 C 1.31223 * 109.85768 * 359.71960 * 6 5 4 8 8 N 1.38582 * 126.46995 * 179.97438 * 7 6 5 9 9 C 1.46897 * 111.00028 * 104.63588 * 8 7 6 10 10 C 1.46899 * 110.99876 * 340.67414 * 8 7 6 11 11 H 1.09002 * 109.46948 * 60.00979 * 10 8 7 12 12 C 1.52995 * 109.47676 * 300.00465 * 10 8 7 13 13 C 1.50703 * 109.47006 * 180.02562 * 10 8 7 14 14 H 1.08004 * 120.00006 * 0.02562 * 13 10 8 15 15 C 1.37880 * 120.00037 * 180.02562 * 13 10 8 16 16 N 1.31509 * 119.99915 * 0.02562 * 15 13 10 17 17 Si 1.86805 * 119.99684 * 180.02562 * 15 13 10 18 18 H 1.48500 * 109.47333 * 59.99871 * 17 15 13 19 19 H 1.48499 * 109.46699 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.46855 * 299.99518 * 17 15 13 21 21 N 1.36455 * 107.05444 * 359.97438 * 7 6 5 22 22 C 1.46499 * 127.13623 * 180.02562 * 21 7 6 23 23 C 1.53002 * 109.46803 * 265.92855 * 22 21 7 24 24 O 1.42900 * 110.45780 * 298.91023 * 23 22 21 25 25 C 1.54686 * 110.54243 * 176.19406 * 23 22 21 26 26 C 1.54480 * 103.98286 * 241.19620 * 25 23 22 27 27 O 1.44430 * 104.89605 * 336.14975 * 26 25 23 28 28 C 1.44422 * 105.27806 * 40.45669 * 27 26 25 29 29 H 1.09001 * 109.47432 * 299.99841 * 1 2 3 30 30 H 1.09000 * 109.47571 * 60.00109 * 1 2 3 31 31 H 1.09004 * 109.47021 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47027 * 240.00330 * 2 1 3 33 33 H 1.09006 * 109.47276 * 59.99898 * 3 2 1 34 34 H 1.09000 * 109.47463 * 180.02562 * 3 2 1 35 35 H 1.09010 * 109.47291 * 300.00147 * 3 2 1 36 36 H 1.08988 * 109.47306 * 53.77466 * 9 8 7 37 37 H 1.09003 * 109.46750 * 173.77309 * 9 8 7 38 38 H 1.09000 * 109.46786 * 293.77015 * 9 8 7 39 39 H 1.08996 * 109.47301 * 59.99749 * 12 10 8 40 40 H 1.09001 * 109.47188 * 180.02562 * 12 10 8 41 41 H 1.09001 * 109.46830 * 300.00307 * 12 10 8 42 42 H 0.97001 * 119.99525 * 180.02562 * 16 15 13 43 43 H 1.08994 * 109.47019 * 145.92608 * 22 21 7 44 44 H 1.09005 * 109.47114 * 25.92282 * 22 21 7 45 45 H 0.96697 * 113.99595 * 181.90794 * 24 23 22 46 46 H 1.08997 * 110.49396 * 122.60623 * 25 23 22 47 47 H 1.09008 * 110.60990 * 359.84327 * 25 23 22 48 48 H 1.08993 * 110.37421 * 217.26515 * 26 25 23 49 49 H 1.08999 * 110.37412 * 95.03102 * 26 25 23 50 50 H 1.08998 * 110.37133 * 78.31754 * 28 27 26 51 51 H 1.08999 * 110.36990 * 200.65640 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.7928 -0.3765 2.4669 6 7 2.3801 -1.1940 3.2659 7 6 3.0264 -2.1044 2.5764 8 7 3.7758 -3.1500 3.0917 9 6 3.0544 -4.4240 2.9716 10 6 4.1545 -2.8888 4.4868 11 1 3.2552 -2.7722 5.0916 12 6 4.9868 -1.6070 4.5580 13 6 4.9669 -4.0445 5.0116 14 1 5.1809 -4.8884 4.3725 15 6 5.4370 -4.0245 6.3076 16 7 5.1760 -2.9971 7.0860 17 14 6.4446 -5.4568 6.9578 18 1 7.6701 -5.6143 6.1341 19 1 6.8273 -5.1928 8.3682 20 1 5.6378 -6.7016 6.8881 21 7 2.8213 -1.8269 1.2562 22 6 3.3434 -2.5677 0.1052 23 6 4.6495 -1.9246 -0.3652 24 8 4.4228 -0.5738 -0.7727 25 6 5.2727 -2.7436 -1.5201 26 6 6.6410 -3.1941 -0.9623 27 8 6.9593 -2.2293 0.0642 28 6 5.7142 -1.9813 0.7527 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8932 -0.5138 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 3.1300 1.4426 -0.0005 35 1 1.6766 1.9564 -0.8900 36 1 2.7508 -4.5733 1.9355 37 1 3.7062 -5.2411 3.2806 38 1 2.1709 -4.4027 3.6096 39 1 4.3996 -0.7709 4.1783 40 1 5.2681 -1.4135 5.5932 41 1 5.8861 -1.7237 3.9532 42 1 5.5071 -2.9829 7.9976 43 1 2.6139 -2.5427 -0.7042 44 1 3.5310 -3.6021 0.3936 45 1 5.2118 -0.1265 -1.1080 46 1 5.4071 -2.1179 -2.4024 47 1 4.6525 -3.6087 -1.7552 48 1 7.3960 -3.1750 -1.7482 49 1 6.5657 -4.1934 -0.5336 50 1 5.4948 -2.7944 1.4447 51 1 5.7573 -1.0307 1.2842 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001460377001.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:09 Heat of formation + Delta-G solvation = 0.498535 kcal Electronic energy + Delta-G solvation = -32845.985012 eV Core-core repulsion = 28782.648601 eV Total energy + Delta-G solvation = -4063.336411 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.52749 -40.00109 -37.21626 -36.38710 -35.23459 -34.45482 -32.77136 -31.46650 -29.37883 -29.06320 -28.77093 -27.06985 -26.42031 -25.36073 -24.35475 -23.29969 -22.77164 -21.58851 -21.03327 -19.75954 -19.02813 -17.50072 -17.19645 -16.30212 -16.22369 -15.90281 -15.37906 -15.17065 -14.86564 -14.68157 -14.56482 -14.45043 -13.93764 -13.76648 -13.50381 -13.32437 -12.95023 -12.86370 -12.57532 -12.29552 -12.07703 -11.95807 -11.66437 -11.58483 -11.52958 -11.36678 -11.13069 -11.09326 -10.96836 -10.92290 -10.88039 -10.67020 -10.44123 -10.29445 -10.20571 -10.05868 -9.84936 -9.62587 -9.56849 -9.18911 -8.58621 -8.42231 -7.43504 -6.03911 -4.11705 2.26723 2.64230 3.29366 3.35053 3.35954 3.47831 3.73048 3.96092 4.17038 4.34569 4.39786 4.55094 4.60743 4.63901 4.69246 4.94146 5.00923 5.04302 5.14411 5.22904 5.28193 5.40820 5.43962 5.51137 5.61431 5.65527 5.67898 5.75744 5.78729 5.88656 5.95298 6.01716 6.06219 6.13663 6.17760 6.36469 6.39048 6.47840 6.51014 6.69281 6.96412 6.98178 7.14806 7.25767 7.36792 7.44828 7.70779 7.74073 7.96847 8.25679 8.45331 8.90040 9.43182 9.53259 11.02361 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.011824 B = 0.004655 C = 0.003748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2367.440731 B = 6013.774715 C = 7468.545972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.009 3.991 3 C -0.133 4.133 4 C 0.179 3.821 5 N -0.291 5.291 6 N -0.313 5.313 7 C 0.374 3.626 8 N -0.463 5.463 9 C 0.041 3.959 10 C 0.231 3.769 11 H 0.024 0.976 12 C -0.133 4.133 13 C -0.517 4.517 14 H 0.063 0.937 15 C 0.065 3.935 16 N -0.883 5.883 17 Si 0.898 3.102 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 N -0.479 5.479 22 C 0.136 3.864 23 C 0.090 3.910 24 O -0.543 6.543 25 C -0.179 4.179 26 C 0.042 3.958 27 O -0.372 6.372 28 C 0.018 3.982 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.050 0.950 32 H 0.083 0.917 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.056 0.944 36 H 0.041 0.959 37 H 0.093 0.907 38 H 0.033 0.967 39 H 0.022 0.978 40 H 0.088 0.912 41 H 0.025 0.975 42 H 0.263 0.737 43 H 0.095 0.905 44 H 0.111 0.889 45 H 0.381 0.619 46 H 0.087 0.913 47 H 0.086 0.914 48 H 0.091 0.909 49 H 0.064 0.936 50 H 0.102 0.898 51 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.149 1.042 -21.107 21.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.012 4.012 3 C -0.191 4.191 4 C -0.088 4.088 5 N -0.130 5.130 6 N -0.156 5.156 7 C 0.019 3.981 8 N -0.188 5.188 9 C -0.106 4.106 10 C 0.127 3.873 11 H 0.042 0.958 12 C -0.191 4.191 13 C -0.555 4.555 14 H 0.081 0.919 15 C -0.138 4.138 16 N -0.520 5.520 17 Si 0.726 3.274 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.203 1.203 21 N -0.175 5.175 22 C 0.011 3.989 23 C 0.048 3.952 24 O -0.349 6.349 25 C -0.217 4.217 26 C -0.035 4.035 27 O -0.291 6.291 28 C -0.059 4.059 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.101 0.899 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.059 0.941 37 H 0.112 0.888 38 H 0.052 0.948 39 H 0.041 0.959 40 H 0.107 0.893 41 H 0.044 0.956 42 H 0.073 0.927 43 H 0.113 0.887 44 H 0.129 0.871 45 H 0.229 0.771 46 H 0.106 0.894 47 H 0.105 0.895 48 H 0.110 0.890 49 H 0.082 0.918 50 H 0.120 0.880 51 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.624 1.763 -19.690 20.098 hybrid contribution 1.013 -1.507 -0.526 1.890 sum -2.611 0.256 -20.216 20.386 Atomic orbital electron populations 1.21837 0.93889 1.01821 1.02526 1.19343 0.95242 0.95757 0.90818 1.21709 1.01809 0.93885 1.01733 1.24473 0.97873 0.89044 0.97458 1.73926 1.19754 1.21571 0.97707 1.74801 1.11325 1.05200 1.24228 1.23062 0.96235 0.98224 0.80621 1.59256 1.34515 0.98277 1.26785 1.22307 0.97838 0.91762 0.98717 1.19317 0.95381 0.95207 0.77365 0.95784 1.21819 0.97834 0.96072 1.03377 1.20998 1.34041 1.03461 0.97043 0.91893 1.24886 0.96084 0.96108 0.96691 1.69909 1.45194 1.29299 1.07646 0.86564 0.80524 0.82384 0.77927 1.20216 1.21252 1.20291 1.46087 1.41137 1.23861 1.06397 1.21736 0.94062 0.95783 0.87287 1.22942 0.95042 0.83622 0.93634 1.86538 1.38920 1.24244 1.85198 1.23648 0.97895 1.01482 0.98713 1.23398 0.95517 0.93483 0.91063 1.89179 1.30441 1.61472 1.48003 1.24380 0.82190 1.04882 0.94462 0.91413 0.92077 0.93100 0.89904 0.91986 0.91922 0.92528 0.94051 0.88798 0.94830 0.95920 0.89335 0.95615 0.92686 0.88699 0.87120 0.77078 0.89393 0.89510 0.89050 0.91760 0.88043 0.88589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.18 37.15 0.34 -1.22 16 2 C 0.01 0.12 2.65 -91.77 -0.24 -0.13 16 3 C -0.13 -1.56 9.17 37.16 0.34 -1.22 16 4 C 0.18 2.97 6.22 -154.02 -0.96 2.01 16 5 N -0.29 -6.01 12.18 32.99 0.40 -5.61 16 6 N -0.31 -7.21 9.94 30.32 0.30 -6.91 16 7 C 0.37 7.56 5.45 -318.86 -1.74 5.82 16 8 N -0.46 -9.58 3.28 -176.09 -0.58 -10.16 16 9 C 0.04 0.75 9.00 60.06 0.54 1.29 16 10 C 0.23 5.85 1.73 -68.87 -0.12 5.73 16 11 H 0.02 0.71 7.92 -51.93 -0.41 0.29 16 12 C -0.13 -3.43 8.79 37.16 0.33 -3.10 16 13 C -0.52 -13.58 7.95 -34.44 -0.27 -13.85 16 14 H 0.06 1.59 6.40 -52.48 -0.34 1.25 16 15 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 16 N -0.88 -25.17 11.32 55.43 0.63 -24.54 16 17 Si 0.90 20.82 29.54 -169.99 -5.02 15.79 16 18 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 19 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 21 N -0.48 -7.73 2.55 -114.08 -0.29 -8.02 16 22 C 0.14 1.60 4.65 -4.04 -0.02 1.58 16 23 C 0.09 1.00 1.21 -88.95 -0.11 0.89 16 24 O -0.54 -5.75 10.45 -35.23 -0.37 -6.11 16 25 C -0.18 -1.44 6.51 -25.07 -0.16 -1.61 16 26 C 0.04 0.42 7.63 37.93 0.29 0.71 16 27 O -0.37 -5.35 11.65 -35.23 -0.41 -5.76 16 28 C 0.02 0.26 6.20 37.94 0.24 0.50 16 29 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.91 6.42 -51.93 -0.33 0.58 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.06 0.79 7.28 -51.93 -0.38 0.41 16 35 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 36 H 0.04 0.60 6.56 -51.94 -0.34 0.26 16 37 H 0.09 1.70 6.32 -51.93 -0.33 1.37 16 38 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.02 0.57 6.18 -51.93 -0.32 0.25 16 40 H 0.09 2.50 6.07 -51.93 -0.32 2.18 16 41 H 0.02 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 43 H 0.09 0.90 7.43 -51.93 -0.39 0.51 16 44 H 0.11 1.24 6.49 -51.93 -0.34 0.91 16 45 H 0.38 3.07 9.04 45.56 0.41 3.48 16 46 H 0.09 0.59 8.00 -51.93 -0.42 0.18 16 47 H 0.09 0.56 7.74 -51.92 -0.40 0.15 16 48 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 49 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 50 H 0.10 1.76 6.29 -51.93 -0.33 1.43 16 51 H 0.10 1.67 8.09 -51.93 -0.42 1.25 16 LS Contribution 391.68 15.07 5.90 5.90 Total: -1.00 -32.38 391.68 -8.66 -41.04 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -7.58 Total: 5.31 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: -1.64 Total: -0.93 kcal Atomic # 7 Polarization: -55.70 SS G_CDS: 0.46 Total: -55.24 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: -0.78 Total: -11.88 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.38 -8.66 -41.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460377001.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.537 kcal (2) G-P(sol) polarization free energy of solvation -32.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds