Wall clock time and date at job start Tue Mar 31 2020 22:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47145 * 2 1 4 4 C 1.50700 * 109.47537 * 120.00078 * 2 1 3 5 5 N 1.30297 * 126.34524 * 300.15749 * 4 2 1 6 6 N 1.28526 * 110.05331 * 180.30938 * 5 4 2 7 7 C 1.31223 * 109.85768 * 359.71960 * 6 5 4 8 8 N 1.38582 * 126.46995 * 179.97438 * 7 6 5 9 9 C 1.46897 * 111.00028 * 104.63588 * 8 7 6 10 10 C 1.46899 * 110.99876 * 340.67414 * 8 7 6 11 11 H 1.09002 * 109.46948 * 60.00979 * 10 8 7 12 12 C 1.52995 * 109.47676 * 300.00465 * 10 8 7 13 13 C 1.50703 * 109.47006 * 180.02562 * 10 8 7 14 14 H 1.08004 * 120.00006 * 0.02562 * 13 10 8 15 15 C 1.37880 * 120.00037 * 180.02562 * 13 10 8 16 16 N 1.31509 * 119.99915 * 0.02562 * 15 13 10 17 17 Si 1.86805 * 119.99684 * 180.02562 * 15 13 10 18 18 H 1.48500 * 109.47333 * 59.99871 * 17 15 13 19 19 H 1.48499 * 109.46699 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.46855 * 299.99518 * 17 15 13 21 21 N 1.36455 * 107.05444 * 359.97438 * 7 6 5 22 22 C 1.46499 * 127.13623 * 180.02562 * 21 7 6 23 23 C 1.53002 * 109.46803 * 265.92855 * 22 21 7 24 24 O 1.42900 * 110.45780 * 298.91023 * 23 22 21 25 25 C 1.54686 * 110.54243 * 176.19406 * 23 22 21 26 26 C 1.54480 * 103.98286 * 241.19620 * 25 23 22 27 27 O 1.44430 * 104.89605 * 336.14975 * 26 25 23 28 28 C 1.44422 * 105.27806 * 40.45669 * 27 26 25 29 29 H 1.09001 * 109.47432 * 299.99841 * 1 2 3 30 30 H 1.09000 * 109.47571 * 60.00109 * 1 2 3 31 31 H 1.09004 * 109.47021 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47027 * 240.00330 * 2 1 3 33 33 H 1.09006 * 109.47276 * 59.99898 * 3 2 1 34 34 H 1.09000 * 109.47463 * 180.02562 * 3 2 1 35 35 H 1.09010 * 109.47291 * 300.00147 * 3 2 1 36 36 H 1.08988 * 109.47306 * 53.77466 * 9 8 7 37 37 H 1.09003 * 109.46750 * 173.77309 * 9 8 7 38 38 H 1.09000 * 109.46786 * 293.77015 * 9 8 7 39 39 H 1.08996 * 109.47301 * 59.99749 * 12 10 8 40 40 H 1.09001 * 109.47188 * 180.02562 * 12 10 8 41 41 H 1.09001 * 109.46830 * 300.00307 * 12 10 8 42 42 H 0.97001 * 119.99525 * 180.02562 * 16 15 13 43 43 H 1.08994 * 109.47019 * 145.92608 * 22 21 7 44 44 H 1.09005 * 109.47114 * 25.92282 * 22 21 7 45 45 H 0.96697 * 113.99595 * 181.90794 * 24 23 22 46 46 H 1.08997 * 110.49396 * 122.60623 * 25 23 22 47 47 H 1.09008 * 110.60990 * 359.84327 * 25 23 22 48 48 H 1.08993 * 110.37421 * 217.26515 * 26 25 23 49 49 H 1.08999 * 110.37412 * 95.03102 * 26 25 23 50 50 H 1.08998 * 110.37133 * 78.31754 * 28 27 26 51 51 H 1.08999 * 110.36990 * 200.65640 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.7928 -0.3765 2.4669 6 7 2.3801 -1.1940 3.2659 7 6 3.0264 -2.1044 2.5764 8 7 3.7758 -3.1500 3.0917 9 6 3.0544 -4.4240 2.9716 10 6 4.1545 -2.8888 4.4868 11 1 3.2552 -2.7722 5.0916 12 6 4.9868 -1.6070 4.5580 13 6 4.9669 -4.0445 5.0116 14 1 5.1809 -4.8884 4.3725 15 6 5.4370 -4.0245 6.3076 16 7 5.1760 -2.9971 7.0860 17 14 6.4446 -5.4568 6.9578 18 1 7.6701 -5.6143 6.1341 19 1 6.8273 -5.1928 8.3682 20 1 5.6378 -6.7016 6.8881 21 7 2.8213 -1.8269 1.2562 22 6 3.3434 -2.5677 0.1052 23 6 4.6495 -1.9246 -0.3652 24 8 4.4228 -0.5738 -0.7727 25 6 5.2727 -2.7436 -1.5201 26 6 6.6410 -3.1941 -0.9623 27 8 6.9593 -2.2293 0.0642 28 6 5.7142 -1.9813 0.7527 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8932 -0.5138 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 3.1300 1.4426 -0.0005 35 1 1.6766 1.9564 -0.8900 36 1 2.7508 -4.5733 1.9355 37 1 3.7062 -5.2411 3.2806 38 1 2.1709 -4.4027 3.6096 39 1 4.3996 -0.7709 4.1783 40 1 5.2681 -1.4135 5.5932 41 1 5.8861 -1.7237 3.9532 42 1 5.5071 -2.9829 7.9976 43 1 2.6139 -2.5427 -0.7042 44 1 3.5310 -3.6021 0.3936 45 1 5.2118 -0.1265 -1.1080 46 1 5.4071 -2.1179 -2.4024 47 1 4.6525 -3.6087 -1.7552 48 1 7.3960 -3.1750 -1.7482 49 1 6.5657 -4.1934 -0.5336 50 1 5.4948 -2.7944 1.4447 51 1 5.7573 -1.0307 1.2842 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001460377001.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:08 Heat of formation + Delta-G solvation = -21.751233 kcal Electronic energy + Delta-G solvation = -32846.949834 eV Core-core repulsion = 28782.648601 eV Total energy + Delta-G solvation = -4064.301233 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.95385 -40.94416 -38.91604 -37.37083 -36.31903 -35.69768 -34.68692 -32.38335 -31.27978 -30.26799 -30.10805 -27.96923 -27.68787 -27.17088 -26.05163 -24.48108 -23.75882 -23.27532 -22.00001 -21.14480 -20.41271 -18.64786 -18.37393 -18.00439 -17.58599 -17.05999 -16.83418 -16.54033 -16.25879 -15.90324 -15.75591 -15.54773 -15.24095 -14.93274 -14.91044 -14.46228 -14.23045 -14.00432 -13.77734 -13.65310 -13.45376 -12.99471 -12.97646 -12.86422 -12.73602 -12.64964 -12.59048 -12.40592 -12.29585 -12.16840 -12.15313 -12.11610 -12.06843 -11.99790 -11.89658 -11.39559 -11.29022 -11.05274 -10.91669 -10.57833 -10.55267 -10.23864 -9.10490 -8.12611 -6.27864 0.89310 1.34110 1.44815 1.46884 1.54253 1.98556 2.41141 2.84300 2.97017 3.11047 3.18395 3.33090 3.46634 3.57615 3.69811 3.84322 4.00035 4.06228 4.17152 4.23781 4.28513 4.29869 4.47226 4.49849 4.54654 4.59205 4.72726 4.79467 4.80431 4.84572 4.86457 4.88671 4.91532 4.97270 5.01310 5.04025 5.06138 5.09386 5.13593 5.19422 5.42439 5.44212 5.48246 5.61992 5.66032 5.75464 5.93393 6.02274 6.16081 6.61419 6.66252 6.82396 7.41122 7.95100 8.94187 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.011824 B = 0.004655 C = 0.003748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2367.440731 B = 6013.774715 C = 7468.545972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.011 3.989 3 C -0.129 4.129 4 C 0.201 3.799 5 N -0.336 5.336 6 N -0.368 5.368 7 C 0.362 3.638 8 N -0.454 5.454 9 C 0.042 3.958 10 C 0.246 3.754 11 H -0.025 1.025 12 C -0.111 4.111 13 C -0.524 4.524 14 H 0.076 0.924 15 C 0.012 3.988 16 N -0.920 5.920 17 Si 0.968 3.032 18 H -0.269 1.269 19 H -0.289 1.289 20 H -0.264 1.264 21 N -0.469 5.469 22 C 0.122 3.878 23 C 0.101 3.899 24 O -0.548 6.548 25 C -0.160 4.160 26 C 0.032 3.968 27 O -0.399 6.399 28 C 0.021 3.979 29 H 0.044 0.956 30 H 0.095 0.905 31 H 0.051 0.949 32 H 0.111 0.889 33 H 0.038 0.962 34 H 0.051 0.949 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.094 0.906 38 H 0.013 0.987 39 H 0.014 0.986 40 H 0.060 0.940 41 H 0.023 0.977 42 H 0.262 0.738 43 H 0.134 0.866 44 H 0.120 0.880 45 H 0.393 0.607 46 H 0.111 0.889 47 H 0.114 0.886 48 H 0.114 0.886 49 H 0.064 0.936 50 H 0.073 0.927 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.230 -0.588 -25.611 25.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.009 4.009 3 C -0.187 4.187 4 C -0.068 4.068 5 N -0.174 5.174 6 N -0.211 5.211 7 C 0.005 3.995 8 N -0.179 5.179 9 C -0.105 4.105 10 C 0.140 3.860 11 H -0.007 1.007 12 C -0.170 4.170 13 C -0.562 4.562 14 H 0.094 0.906 15 C -0.187 4.187 16 N -0.559 5.559 17 Si 0.792 3.208 18 H -0.194 1.194 19 H -0.215 1.215 20 H -0.189 1.189 21 N -0.163 5.163 22 C 0.000 4.000 23 C 0.058 3.942 24 O -0.356 6.356 25 C -0.198 4.198 26 C -0.044 4.044 27 O -0.318 6.318 28 C -0.056 4.056 29 H 0.064 0.936 30 H 0.114 0.886 31 H 0.070 0.930 32 H 0.129 0.871 33 H 0.057 0.943 34 H 0.070 0.930 35 H 0.110 0.890 36 H 0.103 0.897 37 H 0.112 0.888 38 H 0.032 0.968 39 H 0.033 0.967 40 H 0.079 0.921 41 H 0.042 0.958 42 H 0.071 0.929 43 H 0.152 0.848 44 H 0.138 0.862 45 H 0.243 0.757 46 H 0.130 0.870 47 H 0.133 0.867 48 H 0.132 0.868 49 H 0.082 0.918 50 H 0.091 0.909 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.705 0.122 -24.249 24.531 hybrid contribution 1.031 -0.921 0.769 1.582 sum -2.674 -0.799 -23.481 23.646 Atomic orbital electron populations 1.21821 0.92551 1.02133 1.03140 1.19662 0.96214 0.95687 0.89385 1.21679 1.01070 0.93614 1.02328 1.25411 0.95561 0.88104 0.97722 1.73822 1.21585 1.22560 0.99450 1.74663 1.13119 1.06698 1.26636 1.22890 0.96529 0.97778 0.82313 1.59150 1.35484 0.99481 1.23745 1.22396 0.96744 0.90373 1.01035 1.18866 0.93037 0.94638 0.79493 1.00691 1.21551 0.97601 0.96567 1.01257 1.21318 1.33631 1.03870 0.97396 0.90646 1.25799 0.97216 0.98693 0.97030 1.70082 1.46483 1.31464 1.07867 0.85465 0.79060 0.79285 0.76941 1.19399 1.21503 1.18900 1.46223 1.40384 1.23778 1.05946 1.22272 0.95322 0.95796 0.86589 1.22776 0.93355 0.84605 0.93418 1.86497 1.39782 1.24180 1.85120 1.23600 0.96408 1.02193 0.97646 1.23710 0.97616 0.92540 0.90561 1.89151 1.30560 1.62840 1.49265 1.24119 0.84296 1.01602 0.95590 0.93633 0.88642 0.92964 0.87133 0.94262 0.93028 0.89048 0.89720 0.88767 0.96817 0.96704 0.92092 0.95815 0.92884 0.84796 0.86214 0.75678 0.87034 0.86713 0.86788 0.91804 0.90852 0.92587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 9.18 71.98 0.66 -1.98 16 2 C 0.01 0.25 2.65 -11.54 -0.03 0.22 16 3 C -0.13 -2.75 9.17 71.98 0.66 -2.09 16 4 C 0.20 6.53 6.22 137.64 0.86 7.39 16 5 N -0.34 -14.45 12.18 -49.54 -0.60 -15.05 16 6 N -0.37 -17.99 9.94 -58.00 -0.58 -18.57 16 7 C 0.36 15.09 5.45 260.11 1.42 16.51 16 8 N -0.45 -19.38 3.28 -711.02 -2.33 -21.71 16 9 C 0.04 1.49 9.00 127.69 1.15 2.64 16 10 C 0.25 13.12 1.73 44.17 0.08 13.20 16 11 H -0.02 -1.54 7.92 -2.39 -0.02 -1.56 16 12 C -0.11 -6.17 8.79 71.98 0.63 -5.54 16 13 C -0.52 -28.28 7.95 25.60 0.20 -28.08 16 14 H 0.08 3.80 6.40 -2.91 -0.02 3.78 16 15 C 0.01 0.66 5.30 84.66 0.45 1.11 16 16 N -0.92 -54.89 11.32 21.45 0.24 -54.65 16 17 Si 0.97 43.19 29.54 68.60 2.03 45.22 16 18 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 19 H -0.29 -12.93 7.11 99.48 0.71 -12.23 16 20 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 21 N -0.47 -14.68 2.55 -514.85 -1.31 -15.99 16 22 C 0.12 2.47 4.65 86.38 0.40 2.87 16 23 C 0.10 1.95 1.21 -9.71 -0.01 1.94 16 24 O -0.55 -9.95 10.45 -148.98 -1.56 -11.51 16 25 C -0.16 -1.83 6.51 31.67 0.21 -1.62 16 26 C 0.03 0.54 7.63 72.49 0.55 1.09 16 27 O -0.40 -11.17 11.65 -148.98 -1.74 -12.90 16 28 C 0.02 0.64 6.20 72.49 0.45 1.09 16 29 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 32 H 0.11 1.85 6.42 -2.39 -0.02 1.84 16 33 H 0.04 1.01 8.14 -2.38 -0.02 0.99 16 34 H 0.05 1.21 7.28 -2.39 -0.02 1.20 16 35 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 36 H 0.08 2.27 6.56 -2.39 -0.02 2.25 16 37 H 0.09 3.35 6.32 -2.39 -0.02 3.34 16 38 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 39 H 0.01 0.79 6.18 -2.39 -0.01 0.78 16 40 H 0.06 3.69 6.07 -2.39 -0.01 3.67 16 41 H 0.02 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 43 H 0.13 1.75 7.43 -2.39 -0.02 1.73 16 44 H 0.12 2.24 6.49 -2.38 -0.02 2.22 16 45 H 0.39 5.25 9.04 -74.06 -0.67 4.58 16 46 H 0.11 0.84 8.00 -2.39 -0.02 0.82 16 47 H 0.11 0.75 7.74 -2.38 -0.02 0.73 16 48 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 49 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 50 H 0.07 2.59 6.29 -2.39 -0.02 2.57 16 51 H 0.06 2.07 8.09 -2.39 -0.02 2.05 16 Total: -1.00 -78.27 391.68 2.10 -76.17 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: 0.27 Total: 20.23 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: 7.67 Total: 8.75 kcal Atomic # 7 Polarization: -121.39 SS G_CDS: -4.58 Total: -125.97 kcal Atomic # 8 Polarization: -21.11 SS G_CDS: -3.29 Total: -24.41 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -78.27 2.10 -76.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460377001.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.423 kcal (2) G-P(sol) polarization free energy of solvation -78.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds