Wall clock time and date at job start Tue Mar 31 2020 21:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 110.35444 * 2 1 4 4 C 1.54600 * 110.30753 * 122.14287 * 2 1 3 5 5 C 1.54936 * 102.92438 * 140.87421 * 4 2 1 6 6 N 1.48527 * 103.22553 * 322.58405 * 5 4 2 7 7 C 1.46903 * 111.00234 * 159.71980 * 6 5 4 8 8 C 1.50700 * 109.47009 * 52.60416 * 7 6 5 9 9 O 1.21286 * 119.99750 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00392 * 180.02562 * 8 7 6 11 11 C 1.46491 * 120.00523 * 179.97438 * 10 8 7 12 12 H 1.09005 * 112.84861 * 336.19706 * 11 10 8 13 13 C 1.53955 * 113.74525 * 107.40051 * 11 10 8 14 14 C 1.53777 * 87.02101 * 139.94726 * 13 11 10 15 15 H 1.08999 * 113.61328 * 89.23111 * 14 13 11 16 16 N 1.46906 * 113.61426 * 220.05084 * 14 13 11 17 17 C 1.46901 * 110.99793 * 254.13758 * 16 14 13 18 18 C 1.50701 * 109.46921 * 179.97438 * 17 16 14 19 19 O 1.21294 * 119.99849 * 0.02562 * 18 17 16 20 20 N 1.34780 * 119.99795 * 179.97438 * 18 17 16 21 21 C 1.37101 * 119.99707 * 180.02562 * 20 18 17 22 22 H 1.08002 * 119.99704 * 359.97438 * 21 20 18 23 23 C 1.38941 * 119.99927 * 180.02562 * 21 20 18 24 24 N 1.31417 * 120.00180 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00273 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47117 * 59.99412 * 25 23 21 27 27 H 1.48498 * 109.47600 * 179.97438 * 25 23 21 28 28 H 1.48503 * 109.46756 * 300.00019 * 25 23 21 29 29 C 1.53777 * 87.17337 * 334.64072 * 14 13 11 30 30 C 1.47899 * 105.82282 * 39.20392 * 6 5 4 31 31 H 1.09006 * 109.47133 * 182.14761 * 1 2 3 32 32 H 1.08998 * 109.47029 * 302.13929 * 1 2 3 33 33 H 1.08996 * 109.46988 * 62.14490 * 1 2 3 34 34 H 1.09010 * 110.72185 * 259.22930 * 4 2 1 35 35 H 1.09002 * 110.72724 * 22.33058 * 4 2 1 36 36 H 1.08997 * 110.66612 * 204.14866 * 5 4 2 37 37 H 1.08997 * 110.66353 * 81.01595 * 5 4 2 38 38 H 1.08999 * 109.46818 * 292.60100 * 7 6 5 39 39 H 1.08998 * 109.47326 * 172.60122 * 7 6 5 40 40 H 0.97000 * 119.99504 * 359.97438 * 10 8 7 41 41 H 1.08998 * 113.61147 * 25.42467 * 13 11 10 42 42 H 1.09003 * 113.66911 * 254.47875 * 13 11 10 43 43 H 1.00899 * 110.99995 * 130.18156 * 16 14 13 44 44 H 1.09002 * 109.47401 * 59.99808 * 17 16 14 45 45 H 1.09001 * 109.46874 * 299.99821 * 17 16 14 46 46 H 0.96995 * 120.00011 * 0.02562 * 20 18 17 47 47 H 0.97000 * 119.99884 * 180.02562 * 24 23 21 48 48 H 1.09002 * 113.61511 * 139.94103 * 29 14 13 49 49 H 1.09005 * 113.61316 * 270.76178 * 29 14 13 50 50 H 1.09007 * 109.91573 * 94.02523 * 30 6 5 51 51 H 1.09000 * 109.92203 * 215.11792 * 30 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9091 1.0219 0.0000 4 6 2.0666 -0.7714 1.2277 5 6 3.2855 -1.5349 0.6516 6 7 2.8313 -1.9237 -0.7080 7 6 3.9752 -2.2263 -1.5787 8 6 4.8664 -3.2370 -0.9040 9 8 4.5769 -3.6636 0.1938 10 7 5.9851 -3.6670 -1.5205 11 6 6.8518 -4.6490 -0.8644 12 1 6.7457 -4.6493 0.2204 13 6 6.7805 -6.0542 -1.4894 14 6 8.3030 -6.1333 -1.2884 15 1 8.5950 -6.5394 -0.3199 16 7 9.0125 -6.7647 -2.4091 17 6 9.4553 -8.1200 -2.0553 18 6 10.1768 -8.7346 -3.2270 19 8 10.3096 -8.1053 -4.2554 20 7 10.6755 -9.9831 -3.1317 21 6 11.3324 -10.5420 -4.1974 22 1 11.4498 -9.9819 -5.1134 23 6 11.8460 -11.8293 -4.0994 24 7 11.7026 -12.5109 -2.9851 25 14 12.7416 -12.5906 -5.5512 26 1 13.9222 -11.7586 -5.8961 27 1 13.1896 -13.9605 -5.1935 28 1 11.8255 -12.6577 -6.7180 29 6 8.3131 -4.5965 -1.3404 30 6 2.0645 -0.7685 -1.2228 31 1 -0.3634 -1.0270 0.0385 32 1 -0.3633 0.5467 0.8702 33 1 -0.3633 0.4801 -0.9086 34 1 2.3791 -0.0806 2.0109 35 1 1.3160 -1.4660 1.6051 36 1 3.5046 -2.4182 1.2513 37 1 4.1563 -0.8818 0.5942 38 1 4.5394 -1.3131 -1.7678 39 1 3.6150 -2.6331 -2.5236 40 1 6.2164 -3.3261 -2.3987 41 1 6.4779 -6.0514 -2.5366 42 1 6.2228 -6.7726 -0.8886 43 1 9.7905 -6.1972 -2.7103 44 1 8.5888 -8.7307 -1.8017 45 1 10.1281 -8.0704 -1.1992 46 1 10.5696 -10.4861 -2.3092 47 1 12.0615 -13.4095 -2.9166 48 1 8.9910 -4.1396 -0.6194 49 1 8.4317 -4.1944 -2.3466 50 1 2.7162 -0.1227 -1.8113 51 1 1.2348 -1.1177 -1.8374 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480223814.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:07 Heat of formation + Delta-G solvation = -43.091731 kcal Electronic energy + Delta-G solvation = -28290.031220 eV Core-core repulsion = 24224.804594 eV Total energy + Delta-G solvation = -4065.226627 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.59006 -39.46012 -38.40522 -37.86008 -34.63566 -33.86447 -33.74351 -32.54196 -31.19047 -30.11157 -28.10935 -26.80390 -25.81363 -25.37414 -24.24837 -22.79319 -21.62849 -20.75619 -20.45062 -19.82229 -19.14865 -17.87923 -17.37570 -16.97142 -16.26184 -15.96502 -15.80451 -15.45507 -15.22207 -15.17246 -14.46358 -14.32087 -14.16174 -14.01378 -13.77430 -13.63085 -13.42972 -13.29813 -13.05652 -12.55087 -12.51371 -12.38289 -12.11901 -11.96167 -11.79075 -11.71659 -11.55318 -11.28966 -11.26841 -11.09687 -11.01615 -10.98556 -10.91153 -10.61896 -10.44163 -10.21068 -9.79325 -9.49941 -9.19691 -8.76446 -8.44966 -8.08468 -7.95790 -6.41348 -3.82391 2.38271 2.80093 3.20209 3.25973 3.30287 3.68076 3.91210 4.11472 4.19544 4.26556 4.37965 4.40219 4.44271 4.46576 4.58301 4.78610 4.85149 4.88330 4.93220 4.94414 5.06942 5.12702 5.16123 5.20480 5.26441 5.35467 5.41926 5.47063 5.54999 5.56166 5.67130 5.67594 5.74822 5.79528 5.82895 5.90663 5.92929 5.97368 6.04938 6.11261 6.28571 6.42953 6.52053 6.54890 7.23840 7.30301 7.55103 7.64885 8.01939 8.06289 8.61480 9.17880 9.54572 10.05962 10.76271 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.040657 B = 0.001398 C = 0.001389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.528560 B =20030.074788 C =20157.203828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.104 4.104 3 H 0.073 0.927 4 C -0.122 4.122 5 C 0.031 3.969 6 N -0.500 5.500 7 C 0.025 3.975 8 C 0.514 3.486 9 O -0.526 6.526 10 N -0.717 5.717 11 C 0.123 3.877 12 H 0.113 0.887 13 C -0.136 4.136 14 C 0.062 3.938 15 H 0.074 0.926 16 N -0.654 5.654 17 C 0.049 3.951 18 C 0.440 3.560 19 O -0.585 6.585 20 N -0.563 5.563 21 C -0.301 4.301 22 H 0.102 0.898 23 C 0.023 3.977 24 N -0.902 5.902 25 Si 0.931 3.069 26 H -0.274 1.274 27 H -0.284 1.284 28 H -0.273 1.273 29 C -0.147 4.147 30 C 0.037 3.963 31 H 0.060 0.940 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.113 0.887 37 H 0.036 0.964 38 H 0.064 0.936 39 H 0.106 0.894 40 H 0.401 0.599 41 H 0.094 0.906 42 H 0.068 0.932 43 H 0.350 0.650 44 H 0.086 0.914 45 H 0.044 0.956 46 H 0.392 0.608 47 H 0.272 0.728 48 H 0.073 0.927 49 H 0.095 0.905 50 H 0.043 0.957 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.335 24.773 8.424 31.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.123 4.123 3 H 0.091 0.909 4 C -0.160 4.160 5 C -0.096 4.096 6 N -0.225 5.225 7 C -0.106 4.106 8 C 0.300 3.700 9 O -0.402 6.402 10 N -0.368 5.368 11 C 0.018 3.982 12 H 0.131 0.869 13 C -0.176 4.176 14 C -0.049 4.049 15 H 0.092 0.908 16 N -0.286 5.286 17 C -0.083 4.083 18 C 0.226 3.774 19 O -0.469 6.469 20 N -0.200 5.200 21 C -0.431 4.431 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.543 5.543 25 Si 0.758 3.242 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 C -0.186 4.186 30 C -0.090 4.090 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.095 0.905 36 H 0.131 0.869 37 H 0.054 0.946 38 H 0.082 0.918 39 H 0.124 0.876 40 H 0.236 0.764 41 H 0.112 0.888 42 H 0.087 0.913 43 H 0.170 0.830 44 H 0.104 0.896 45 H 0.062 0.938 46 H 0.226 0.774 47 H 0.082 0.918 48 H 0.091 0.909 49 H 0.113 0.887 50 H 0.062 0.938 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -18.264 23.990 8.273 31.265 hybrid contribution 1.846 0.240 -0.199 1.872 sum -16.417 24.230 8.074 30.361 Atomic orbital electron populations 1.21825 0.94247 1.02280 1.01537 1.21996 0.96584 0.98890 0.94854 0.90896 1.22640 0.97974 0.98659 0.96771 1.23524 0.95439 1.00176 0.90455 1.64682 1.19297 1.36235 1.02258 1.22256 0.92309 0.97930 0.98133 1.20483 0.81141 0.82366 0.86023 1.90644 1.71850 1.57481 1.20230 1.45952 1.24267 1.44732 1.21883 1.22397 0.88954 0.88424 0.98436 0.86881 1.23595 0.96040 0.95660 1.02298 1.22797 0.95453 0.92975 0.93713 0.90809 1.60212 1.32181 1.02640 1.33613 1.21738 0.99128 0.91179 0.96280 1.19824 0.84663 0.83452 0.89484 1.90515 1.62620 1.62423 1.31364 1.41861 1.49434 1.12802 1.15870 1.19657 1.30870 0.97819 0.94705 0.87984 1.25257 0.98106 0.96423 0.98083 1.69607 1.46333 1.12437 1.25912 0.85917 0.79637 0.77833 0.80821 1.19935 1.20967 1.19880 1.23601 0.95778 0.96633 1.02605 1.23051 0.98169 0.90853 0.96971 0.92049 0.92645 0.92707 0.91272 0.90509 0.86934 0.94605 0.91839 0.87577 0.76410 0.88753 0.91307 0.82960 0.89582 0.93804 0.77443 0.91814 0.90879 0.88699 0.93818 0.89939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.75 8.90 37.16 0.33 -0.42 16 2 C -0.10 -0.64 3.59 -89.26 -0.32 -0.96 16 3 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 4 C -0.12 -0.88 6.61 -24.87 -0.16 -1.05 16 5 C 0.03 0.28 5.30 -1.90 -0.01 0.27 16 6 N -0.50 -4.48 5.26 -231.90 -1.22 -5.70 16 7 C 0.03 0.19 5.52 -4.97 -0.03 0.16 16 8 C 0.51 5.14 7.54 -10.99 -0.08 5.05 16 9 O -0.53 -7.12 13.12 5.55 0.07 -7.05 16 10 N -0.72 -6.03 5.36 -52.93 -0.28 -6.32 16 11 C 0.12 1.20 4.24 -67.03 -0.28 0.91 16 12 H 0.11 1.22 7.46 -51.93 -0.39 0.83 16 13 C -0.14 -1.56 7.70 -25.83 -0.20 -1.76 16 14 C 0.06 0.72 4.12 -66.90 -0.28 0.45 16 15 H 0.07 0.83 7.88 -51.93 -0.41 0.42 16 16 N -0.65 -10.15 6.18 -107.13 -0.66 -10.82 16 17 C 0.05 0.87 6.02 -4.97 -0.03 0.84 16 18 C 0.44 10.38 7.82 -10.98 -0.09 10.30 16 19 O -0.58 -15.81 15.78 5.55 0.09 -15.72 16 20 N -0.56 -14.31 5.29 -10.96 -0.06 -14.37 16 21 C -0.30 -8.42 9.68 -14.94 -0.14 -8.57 16 22 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 23 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 24 N -0.90 -24.58 13.05 55.50 0.72 -23.85 16 25 Si 0.93 21.06 29.55 -169.99 -5.02 16.04 16 26 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 27 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 28 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 29 C -0.15 -1.36 7.42 -25.92 -0.19 -1.55 16 30 C 0.04 0.25 6.35 -2.76 -0.02 0.24 16 31 H 0.06 0.37 8.11 -51.93 -0.42 -0.05 16 32 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 33 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.07 0.42 8.14 -51.92 -0.42 0.00 16 35 H 0.08 0.59 7.84 -51.93 -0.41 0.18 16 36 H 0.11 1.30 5.97 -51.93 -0.31 0.99 16 37 H 0.04 0.32 8.02 -51.93 -0.42 -0.10 16 38 H 0.06 0.37 7.81 -51.93 -0.41 -0.04 16 39 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.40 2.44 8.73 -40.82 -0.36 2.08 16 41 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.35 5.55 8.26 -39.29 -0.32 5.22 16 44 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 45 H 0.04 0.69 8.13 -51.93 -0.42 0.27 16 46 H 0.39 9.54 7.90 -40.82 -0.32 9.22 16 47 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 48 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 49 H 0.09 0.85 8.12 -51.93 -0.42 0.43 16 50 H 0.04 0.25 7.57 -51.92 -0.39 -0.14 16 51 H 0.08 0.54 7.69 -51.93 -0.40 0.14 16 LS Contribution 409.45 15.07 6.17 6.17 Total: -1.00 -33.04 409.45 -10.50 -43.55 By element: Atomic # 1 Polarization: 22.33 SS G_CDS: -8.71 Total: 13.62 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: -1.60 Total: 4.44 kcal Atomic # 7 Polarization: -59.55 SS G_CDS: -1.50 Total: -61.05 kcal Atomic # 8 Polarization: -22.92 SS G_CDS: 0.16 Total: -22.76 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -33.04 -10.50 -43.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480223814.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.453 kcal (2) G-P(sol) polarization free energy of solvation -33.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds