Wall clock time and date at job start Tue Mar 31 2020 21:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 110.35444 * 2 1 4 4 C 1.54600 * 110.30753 * 122.14287 * 2 1 3 5 5 C 1.54936 * 102.92438 * 140.87421 * 4 2 1 6 6 N 1.48527 * 103.22553 * 322.58405 * 5 4 2 7 7 C 1.46903 * 111.00234 * 159.71980 * 6 5 4 8 8 C 1.50700 * 109.47009 * 52.60416 * 7 6 5 9 9 O 1.21286 * 119.99750 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00392 * 180.02562 * 8 7 6 11 11 C 1.46491 * 120.00523 * 179.97438 * 10 8 7 12 12 H 1.09005 * 112.84861 * 336.19706 * 11 10 8 13 13 C 1.53955 * 113.74525 * 107.40051 * 11 10 8 14 14 C 1.53777 * 87.02101 * 139.94726 * 13 11 10 15 15 H 1.08999 * 113.61328 * 89.23111 * 14 13 11 16 16 N 1.46906 * 113.61426 * 220.05084 * 14 13 11 17 17 C 1.46901 * 110.99793 * 254.13758 * 16 14 13 18 18 C 1.50701 * 109.46921 * 179.97438 * 17 16 14 19 19 O 1.21294 * 119.99849 * 0.02562 * 18 17 16 20 20 N 1.34780 * 119.99795 * 179.97438 * 18 17 16 21 21 C 1.37101 * 119.99707 * 180.02562 * 20 18 17 22 22 H 1.08002 * 119.99704 * 359.97438 * 21 20 18 23 23 C 1.38941 * 119.99927 * 180.02562 * 21 20 18 24 24 N 1.31417 * 120.00180 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00273 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47117 * 59.99412 * 25 23 21 27 27 H 1.48498 * 109.47600 * 179.97438 * 25 23 21 28 28 H 1.48503 * 109.46756 * 300.00019 * 25 23 21 29 29 C 1.53777 * 87.17337 * 334.64072 * 14 13 11 30 30 C 1.47899 * 105.82282 * 39.20392 * 6 5 4 31 31 H 1.09006 * 109.47133 * 182.14761 * 1 2 3 32 32 H 1.08998 * 109.47029 * 302.13929 * 1 2 3 33 33 H 1.08996 * 109.46988 * 62.14490 * 1 2 3 34 34 H 1.09010 * 110.72185 * 259.22930 * 4 2 1 35 35 H 1.09002 * 110.72724 * 22.33058 * 4 2 1 36 36 H 1.08997 * 110.66612 * 204.14866 * 5 4 2 37 37 H 1.08997 * 110.66353 * 81.01595 * 5 4 2 38 38 H 1.08999 * 109.46818 * 292.60100 * 7 6 5 39 39 H 1.08998 * 109.47326 * 172.60122 * 7 6 5 40 40 H 0.97000 * 119.99504 * 359.97438 * 10 8 7 41 41 H 1.08998 * 113.61147 * 25.42467 * 13 11 10 42 42 H 1.09003 * 113.66911 * 254.47875 * 13 11 10 43 43 H 1.00899 * 110.99995 * 130.18156 * 16 14 13 44 44 H 1.09002 * 109.47401 * 59.99808 * 17 16 14 45 45 H 1.09001 * 109.46874 * 299.99821 * 17 16 14 46 46 H 0.96995 * 120.00011 * 0.02562 * 20 18 17 47 47 H 0.97000 * 119.99884 * 180.02562 * 24 23 21 48 48 H 1.09002 * 113.61511 * 139.94103 * 29 14 13 49 49 H 1.09005 * 113.61316 * 270.76178 * 29 14 13 50 50 H 1.09007 * 109.91573 * 94.02523 * 30 6 5 51 51 H 1.09000 * 109.92203 * 215.11792 * 30 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9091 1.0219 0.0000 4 6 2.0666 -0.7714 1.2277 5 6 3.2855 -1.5349 0.6516 6 7 2.8313 -1.9237 -0.7080 7 6 3.9752 -2.2263 -1.5787 8 6 4.8664 -3.2370 -0.9040 9 8 4.5769 -3.6636 0.1938 10 7 5.9851 -3.6670 -1.5205 11 6 6.8518 -4.6490 -0.8644 12 1 6.7457 -4.6493 0.2204 13 6 6.7805 -6.0542 -1.4894 14 6 8.3030 -6.1333 -1.2884 15 1 8.5950 -6.5394 -0.3199 16 7 9.0125 -6.7647 -2.4091 17 6 9.4553 -8.1200 -2.0553 18 6 10.1768 -8.7346 -3.2270 19 8 10.3096 -8.1053 -4.2554 20 7 10.6755 -9.9831 -3.1317 21 6 11.3324 -10.5420 -4.1974 22 1 11.4498 -9.9819 -5.1134 23 6 11.8460 -11.8293 -4.0994 24 7 11.7026 -12.5109 -2.9851 25 14 12.7416 -12.5906 -5.5512 26 1 13.9222 -11.7586 -5.8961 27 1 13.1896 -13.9605 -5.1935 28 1 11.8255 -12.6577 -6.7180 29 6 8.3131 -4.5965 -1.3404 30 6 2.0645 -0.7685 -1.2228 31 1 -0.3634 -1.0270 0.0385 32 1 -0.3633 0.5467 0.8702 33 1 -0.3633 0.4801 -0.9086 34 1 2.3791 -0.0806 2.0109 35 1 1.3160 -1.4660 1.6051 36 1 3.5046 -2.4182 1.2513 37 1 4.1563 -0.8818 0.5942 38 1 4.5394 -1.3131 -1.7678 39 1 3.6150 -2.6331 -2.5236 40 1 6.2164 -3.3261 -2.3987 41 1 6.4779 -6.0514 -2.5366 42 1 6.2228 -6.7726 -0.8886 43 1 9.7905 -6.1972 -2.7103 44 1 8.5888 -8.7307 -1.8017 45 1 10.1281 -8.0704 -1.1992 46 1 10.5696 -10.4861 -2.3092 47 1 12.0615 -13.4095 -2.9166 48 1 8.9910 -4.1396 -0.6194 49 1 8.4317 -4.1944 -2.3466 50 1 2.7162 -0.1227 -1.8113 51 1 1.2348 -1.1177 -1.8374 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480223814.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:06 Heat of formation + Delta-G solvation = -69.418686 kcal Electronic energy + Delta-G solvation = -28291.172843 eV Core-core repulsion = 24224.804594 eV Total energy + Delta-G solvation = -4066.368249 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.36111 -40.38357 -39.85963 -38.90280 -36.12939 -35.43332 -34.35284 -33.61780 -33.18942 -30.69154 -28.88259 -28.19816 -26.69226 -26.24783 -25.68485 -23.75223 -22.32400 -21.52848 -21.17034 -20.95347 -20.54283 -19.88823 -18.11508 -17.96078 -17.44761 -16.86932 -16.75586 -16.61480 -16.35996 -16.22153 -16.02575 -15.70621 -15.17126 -15.00867 -14.79160 -14.49342 -14.31481 -14.18005 -14.08086 -13.59963 -13.49738 -13.36336 -13.26295 -13.09317 -12.95104 -12.86208 -12.53784 -12.43585 -12.37197 -12.19970 -12.13641 -11.93011 -11.73898 -11.64201 -11.52696 -11.49646 -11.47410 -10.59511 -10.32877 -10.01784 -9.98896 -9.37073 -9.32083 -8.46379 -5.95530 1.40173 1.42078 1.53112 1.62315 2.05206 2.09735 2.29852 2.96964 3.10152 3.20969 3.49248 3.55321 3.66023 3.69951 3.71899 3.93463 3.95461 3.98293 4.06546 4.27576 4.31135 4.34665 4.40614 4.46074 4.55041 4.56711 4.61133 4.66304 4.67098 4.81120 4.85520 4.87638 4.94513 5.01649 5.05059 5.09316 5.16030 5.20267 5.25385 5.28861 5.40743 5.44298 5.62792 5.90201 5.92645 5.98623 6.14514 6.43784 6.59826 6.61101 7.12291 7.29930 7.56134 8.11049 8.70739 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.040657 B = 0.001398 C = 0.001389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.528560 B =20030.074788 C =20157.203828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.101 4.101 3 H 0.085 0.915 4 C -0.121 4.121 5 C 0.034 3.966 6 N -0.523 5.523 7 C 0.028 3.972 8 C 0.510 3.490 9 O -0.566 6.566 10 N -0.707 5.707 11 C 0.132 3.868 12 H 0.104 0.896 13 C -0.138 4.138 14 C 0.058 3.942 15 H 0.084 0.916 16 N -0.665 5.665 17 C 0.064 3.936 18 C 0.437 3.563 19 O -0.623 6.623 20 N -0.573 5.573 21 C -0.336 4.336 22 H 0.080 0.920 23 C -0.012 4.012 24 N -0.921 5.921 25 Si 0.993 3.007 26 H -0.271 1.271 27 H -0.271 1.271 28 H -0.272 1.272 29 C -0.130 4.130 30 C 0.037 3.963 31 H 0.049 0.951 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.079 0.921 35 H 0.066 0.934 36 H 0.082 0.918 37 H 0.037 0.963 38 H 0.087 0.913 39 H 0.122 0.878 40 H 0.415 0.585 41 H 0.084 0.916 42 H 0.060 0.940 43 H 0.348 0.652 44 H 0.098 0.902 45 H 0.068 0.932 46 H 0.396 0.604 47 H 0.278 0.722 48 H 0.089 0.911 49 H 0.101 0.899 50 H 0.058 0.942 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.465 26.173 8.178 32.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.120 4.120 3 H 0.103 0.897 4 C -0.159 4.159 5 C -0.093 4.093 6 N -0.248 5.248 7 C -0.103 4.103 8 C 0.297 3.703 9 O -0.445 6.445 10 N -0.359 5.359 11 C 0.026 3.974 12 H 0.122 0.878 13 C -0.178 4.178 14 C -0.053 4.053 15 H 0.102 0.898 16 N -0.298 5.298 17 C -0.068 4.068 18 C 0.225 3.775 19 O -0.509 6.509 20 N -0.210 5.210 21 C -0.466 4.466 22 H 0.098 0.902 23 C -0.212 4.212 24 N -0.561 5.561 25 Si 0.817 3.183 26 H -0.196 1.196 27 H -0.195 1.195 28 H -0.198 1.198 29 C -0.168 4.168 30 C -0.090 4.090 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.098 0.902 35 H 0.085 0.915 36 H 0.100 0.900 37 H 0.055 0.945 38 H 0.105 0.895 39 H 0.140 0.860 40 H 0.252 0.748 41 H 0.102 0.898 42 H 0.079 0.921 43 H 0.168 0.832 44 H 0.116 0.884 45 H 0.086 0.914 46 H 0.230 0.770 47 H 0.087 0.913 48 H 0.107 0.893 49 H 0.119 0.881 50 H 0.076 0.924 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -18.401 25.406 8.027 32.380 hybrid contribution 1.843 -0.179 -0.106 1.855 sum -16.558 25.227 7.921 31.198 Atomic orbital electron populations 1.21797 0.93714 1.01774 1.02320 1.22011 0.97011 0.99149 0.93853 0.89710 1.22624 0.97026 0.98630 0.97611 1.23357 0.96258 0.99037 0.90662 1.64635 1.20126 1.37592 1.02427 1.22305 0.91867 0.98123 0.97962 1.20991 0.81361 0.82378 0.85574 1.90646 1.72822 1.58981 1.22051 1.45859 1.23681 1.44016 1.22302 1.22178 0.89603 0.87751 0.97903 0.87782 1.23571 0.95823 0.96767 1.01625 1.22919 0.94865 0.94633 0.92858 0.89816 1.60193 1.32116 1.01860 1.35641 1.21588 0.99213 0.92125 0.93925 1.20882 0.83465 0.82571 0.90583 1.90482 1.63781 1.63169 1.33479 1.41940 1.49927 1.13645 1.15522 1.19655 1.33073 0.98799 0.95068 0.90219 1.26043 0.98217 0.96229 1.00700 1.69672 1.46490 1.12786 1.27191 0.84986 0.78372 0.77391 0.77574 1.19574 1.19521 1.19750 1.23498 0.95418 0.94533 1.03399 1.23100 0.98205 0.90428 0.97282 0.93171 0.92100 0.91715 0.90236 0.91524 0.89955 0.94485 0.89497 0.86030 0.74816 0.89790 0.92146 0.83240 0.88418 0.91425 0.77023 0.91300 0.89268 0.88057 0.92388 0.89801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 8.90 71.98 0.64 -0.64 16 2 C -0.10 -1.08 3.59 -9.91 -0.04 -1.12 16 3 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 4 C -0.12 -1.68 6.61 31.80 0.21 -1.47 16 5 C 0.03 0.62 5.30 86.65 0.46 1.08 16 6 N -0.52 -8.88 5.26 -887.59 -4.67 -13.55 16 7 C 0.03 0.38 5.52 85.56 0.47 0.85 16 8 C 0.51 9.79 7.54 87.66 0.66 10.45 16 9 O -0.57 -15.56 13.12 -3.05 -0.04 -15.60 16 10 N -0.71 -10.90 5.36 -439.77 -2.36 -13.26 16 11 C 0.13 2.39 4.24 45.58 0.19 2.59 16 12 H 0.10 2.17 7.46 -2.38 -0.02 2.15 16 13 C -0.14 -3.05 7.70 31.18 0.24 -2.81 16 14 C 0.06 1.26 4.12 45.44 0.19 1.45 16 15 H 0.08 1.71 7.88 -2.39 -0.02 1.69 16 16 N -0.67 -19.94 6.18 -492.85 -3.04 -22.98 16 17 C 0.06 2.18 6.02 85.56 0.52 2.69 16 18 C 0.44 20.77 7.82 87.66 0.69 21.46 16 19 O -0.62 -34.22 15.78 -3.07 -0.05 -34.27 16 20 N -0.57 -29.54 5.29 -306.98 -1.62 -31.16 16 21 C -0.34 -19.17 9.68 84.04 0.81 -18.36 16 22 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 23 C -0.01 -0.65 5.50 84.92 0.47 -0.18 16 24 N -0.92 -49.87 13.05 21.66 0.28 -49.58 16 25 Si 0.99 42.89 29.55 68.60 2.03 44.92 16 26 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 27 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 28 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 29 C -0.13 -2.12 7.42 31.12 0.23 -1.89 16 30 C 0.04 0.44 6.35 86.45 0.55 0.99 16 31 H 0.05 0.58 8.11 -2.38 -0.02 0.56 16 32 H 0.06 0.49 8.14 -2.39 -0.02 0.48 16 33 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 35 H 0.07 1.04 7.84 -2.39 -0.02 1.02 16 36 H 0.08 2.01 5.97 -2.39 -0.01 2.00 16 37 H 0.04 0.63 8.02 -2.39 -0.02 0.61 16 38 H 0.09 0.77 7.81 -2.39 -0.02 0.75 16 39 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.41 4.18 8.73 -92.71 -0.81 3.37 16 41 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.35 10.67 8.26 -89.69 -0.74 9.93 16 44 H 0.10 3.13 8.14 -2.39 -0.02 3.11 16 45 H 0.07 2.00 8.13 -2.39 -0.02 1.99 16 46 H 0.40 19.43 7.90 -92.71 -0.73 18.70 16 47 H 0.28 14.11 8.31 -92.71 -0.77 13.34 16 48 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 49 H 0.10 1.57 8.12 -2.38 -0.02 1.55 16 50 H 0.06 0.51 7.57 -2.38 -0.02 0.50 16 51 H 0.08 0.95 7.69 -2.39 -0.02 0.94 16 Total: -1.00 -72.52 409.45 -4.51 -77.03 By element: Atomic # 1 Polarization: 44.68 SS G_CDS: -1.33 Total: 43.35 kcal Atomic # 6 Polarization: 8.81 SS G_CDS: 6.29 Total: 15.10 kcal Atomic # 7 Polarization: -119.12 SS G_CDS: -11.41 Total: -130.53 kcal Atomic # 8 Polarization: -49.78 SS G_CDS: -0.09 Total: -49.87 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Total: -72.52 -4.51 -77.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480223814.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.608 kcal (2) G-P(sol) polarization free energy of solvation -72.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds