Wall clock time and date at job start Tue Mar 31 2020 22:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.46812 * 2 1 4 4 C 1.53001 * 109.47268 * 240.00186 * 2 1 3 5 5 C 1.50703 * 109.46914 * 174.99860 * 4 2 1 6 6 O 1.21275 * 120.00111 * 0.02562 * 5 4 2 7 7 N 1.34778 * 119.99612 * 179.97438 * 5 4 2 8 8 C 1.46928 * 120.55057 * 179.97438 * 7 5 4 9 9 C 1.53342 * 108.68473 * 125.63017 * 8 7 5 10 10 C 1.52110 * 109.44249 * 53.30481 * 9 8 7 11 11 C 1.54385 * 110.50739 * 64.08966 * 10 9 8 12 12 C 1.54457 * 102.87109 * 83.33374 * 11 10 9 13 13 N 1.47083 * 107.29725 * 21.50085 * 12 11 10 14 14 C 1.36935 * 125.62931 * 180.96847 * 13 12 11 15 15 H 1.08003 * 119.99937 * 168.95343 * 14 13 12 16 16 C 1.38811 * 119.99964 * 348.94815 * 14 13 12 17 17 N 1.31619 * 119.99929 * 165.65470 * 16 14 13 18 18 Si 1.86799 * 120.00069 * 345.65523 * 16 14 13 19 19 H 1.48500 * 109.47088 * 185.28736 * 18 16 14 20 20 H 1.48495 * 109.46844 * 305.28614 * 18 16 14 21 21 H 1.48497 * 109.46908 * 65.28631 * 18 16 14 22 22 C 1.47575 * 108.74515 * 1.23423 * 13 12 11 23 23 C 1.52103 * 111.59976 * 300.69054 * 10 9 8 24 24 C 1.46928 * 120.55101 * 359.97438 * 7 5 4 25 25 N 1.46494 * 109.47025 * 119.99776 * 2 1 3 26 26 C 1.34780 * 120.00211 * 275.00062 * 25 2 1 27 27 N 1.34773 * 119.99701 * 179.97438 * 26 25 2 28 28 O 1.21581 * 120.00036 * 0.02562 * 26 25 2 29 29 H 1.08999 * 109.47025 * 59.99806 * 1 2 3 30 30 H 1.08996 * 109.46726 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46990 * 299.99678 * 1 2 3 32 32 H 1.09003 * 109.46769 * 54.99847 * 4 2 1 33 33 H 1.08995 * 109.46689 * 294.99962 * 4 2 1 34 34 H 1.08999 * 109.60337 * 5.87416 * 8 7 5 35 35 H 1.09002 * 109.60479 * 245.38772 * 8 7 5 36 36 H 1.08999 * 109.47461 * 293.31423 * 9 8 7 37 37 H 1.08999 * 109.48299 * 173.29949 * 9 8 7 38 38 H 1.08995 * 110.73888 * 324.98680 * 11 10 9 39 39 H 1.09004 * 110.73381 * 201.67143 * 11 10 9 40 40 H 1.09003 * 109.87682 * 262.08138 * 12 11 10 41 41 H 1.09002 * 109.88538 * 140.92812 * 12 11 10 42 42 H 0.97002 * 120.00420 * 354.93210 * 17 16 14 43 43 H 1.09003 * 110.37719 * 95.25320 * 22 13 12 44 44 H 1.08995 * 110.38134 * 217.60924 * 22 13 12 45 45 H 1.08994 * 109.47603 * 179.28981 * 23 10 9 46 46 H 1.09001 * 109.48068 * 299.31611 * 23 10 9 47 47 H 1.08992 * 109.60702 * 354.12479 * 24 7 5 48 48 H 1.08995 * 109.60156 * 114.60997 * 24 7 5 49 49 H 0.97000 * 119.99623 * 95.00177 * 25 2 1 50 50 H 0.97007 * 120.00223 * 0.02562 * 27 26 25 51 51 H 0.97001 * 119.99950 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 3.5420 -0.6148 -1.3127 6 8 4.1451 -0.0211 -0.4440 7 7 4.2151 -1.1804 -2.3343 8 6 5.6793 -1.0836 -2.4085 9 6 6.2593 -2.4975 -2.5344 10 6 5.5956 -3.2150 -3.7000 11 6 5.9300 -2.5083 -5.0312 12 6 7.3096 -3.0986 -5.3971 13 7 7.4455 -4.3729 -4.6752 14 6 8.5360 -5.2001 -4.7154 15 1 8.6173 -6.0206 -4.0178 16 6 9.5368 -4.9841 -5.6527 17 7 10.7016 -5.5827 -5.5214 18 14 9.2305 -3.8439 -7.1002 19 1 10.3986 -3.8823 -8.0164 20 1 8.0147 -4.2855 -7.8295 21 1 9.0349 -2.4575 -6.6055 22 6 6.2100 -4.6160 -3.9057 23 6 4.0894 -3.3135 -3.5125 24 6 3.4968 -1.9039 -3.3922 25 7 2.0183 -0.6905 1.1962 26 6 2.1470 -0.0182 2.3572 27 7 2.5958 -0.6537 3.4577 28 8 1.8575 1.1614 2.4119 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6054 -0.2616 -2.1370 33 1 1.7517 -1.7714 -1.2056 34 1 6.0609 -0.6112 -1.5033 35 1 5.9631 -0.4930 -3.2796 36 1 6.0727 -3.0502 -1.6137 37 1 7.3333 -2.4356 -2.7098 38 1 5.9971 -1.4297 -4.8894 39 1 5.1910 -2.7531 -5.7943 40 1 8.0993 -2.4128 -5.0901 41 1 7.3649 -3.2736 -6.4715 42 1 10.8868 -6.1160 -4.7326 43 1 5.5293 -5.2521 -4.4715 44 1 6.4453 -5.0715 -2.9439 45 1 3.6488 -3.8209 -4.3706 46 1 3.8721 -3.8778 -2.6055 47 1 2.4397 -1.9723 -3.1357 48 1 3.6122 -1.3766 -4.3391 49 1 2.2490 -1.6317 1.1526 50 1 2.8265 -1.5949 3.4141 51 1 2.6881 -0.1699 4.2933 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482068639.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:14 Heat of formation + Delta-G solvation = -37.441372 kcal Electronic energy + Delta-G solvation = -30904.730365 eV Core-core repulsion = 26839.748757 eV Total energy + Delta-G solvation = -4064.981609 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.80476 -39.98107 -38.87786 -36.31073 -35.76650 -33.89083 -33.26017 -31.74590 -31.34873 -30.81745 -29.11176 -28.47082 -26.98268 -23.83143 -23.61464 -22.97065 -22.42139 -20.99777 -20.54828 -19.85763 -18.57179 -18.22788 -17.47267 -17.40924 -16.96207 -16.02892 -15.94921 -15.45725 -15.39136 -15.10122 -14.90311 -14.39951 -14.05727 -14.02187 -13.78390 -13.52643 -13.39033 -13.12192 -13.05401 -12.75461 -12.63628 -12.33469 -12.30459 -12.22326 -11.80945 -11.52075 -11.32867 -11.28850 -11.18974 -10.98745 -10.48437 -10.41606 -10.39772 -10.27992 -10.00251 -9.86459 -9.80568 -9.33085 -9.20714 -8.97197 -8.73231 -8.65295 -7.03647 -6.31995 -3.23457 2.48135 2.72451 2.83194 3.13685 3.40107 3.47367 3.69978 4.19385 4.25950 4.34280 4.58946 4.61623 4.68287 4.80257 4.84193 4.96534 5.00544 5.11303 5.11940 5.17134 5.20604 5.26921 5.35471 5.38533 5.49324 5.59213 5.65106 5.70008 5.73230 5.77051 5.86974 5.90031 5.91985 6.00312 6.20971 6.27230 6.30002 6.32387 6.37618 6.49471 6.50894 6.60941 6.72818 6.73408 6.75322 7.28207 7.66345 7.78242 8.05419 8.32439 8.49644 9.03192 9.55089 10.22369 11.18671 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.024293 B = 0.002469 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.319361 B =11339.853975 C =11755.704593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.176 3.824 3 H 0.096 0.904 4 C -0.151 4.151 5 C 0.509 3.491 6 O -0.532 6.532 7 N -0.608 5.608 8 C 0.111 3.889 9 C -0.110 4.110 10 C -0.072 4.072 11 C -0.123 4.123 12 C 0.112 3.888 13 N -0.611 5.611 14 C -0.320 4.320 15 H 0.077 0.923 16 C -0.023 4.023 17 N -0.930 5.930 18 Si 1.073 2.927 19 H -0.303 1.303 20 H -0.299 1.299 21 H -0.287 1.287 22 C 0.147 3.853 23 C -0.117 4.117 24 C 0.107 3.893 25 N -0.729 5.729 26 C 0.713 3.287 27 N -0.870 5.870 28 O -0.597 6.597 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.109 0.891 33 H 0.098 0.902 34 H 0.090 0.910 35 H 0.069 0.931 36 H 0.061 0.939 37 H 0.085 0.915 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.044 0.956 41 H 0.026 0.974 42 H 0.261 0.739 43 H 0.023 0.977 44 H 0.042 0.958 45 H 0.077 0.923 46 H 0.066 0.934 47 H 0.082 0.918 48 H 0.072 0.928 49 H 0.392 0.608 50 H 0.395 0.605 51 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.732 7.987 9.919 26.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.070 3.930 3 H 0.114 0.886 4 C -0.192 4.192 5 C 0.296 3.704 6 O -0.408 6.408 7 N -0.342 5.342 8 C -0.011 4.011 9 C -0.148 4.148 10 C -0.073 4.073 11 C -0.160 4.160 12 C -0.013 4.013 13 N -0.339 5.339 14 C -0.447 4.447 15 H 0.094 0.906 16 C -0.222 4.222 17 N -0.571 5.571 18 Si 0.907 3.093 19 H -0.231 1.231 20 H -0.228 1.228 21 H -0.214 1.214 22 C 0.021 3.979 23 C -0.155 4.155 24 C -0.016 4.016 25 N -0.384 5.384 26 C 0.411 3.589 27 N -0.438 5.438 28 O -0.476 6.476 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.127 0.873 33 H 0.116 0.884 34 H 0.108 0.892 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.104 0.896 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.061 0.939 41 H 0.043 0.957 42 H 0.071 0.929 43 H 0.041 0.959 44 H 0.060 0.940 45 H 0.096 0.904 46 H 0.084 0.916 47 H 0.100 0.900 48 H 0.090 0.910 49 H 0.226 0.774 50 H 0.223 0.777 51 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -21.922 9.837 8.863 25.611 hybrid contribution -0.372 -1.642 1.482 2.243 sum -22.294 8.195 10.345 25.908 Atomic orbital electron populations 1.22221 0.94927 1.02162 1.02953 1.20513 0.93104 0.97807 0.81584 0.88587 1.22108 0.93329 1.03465 1.00290 1.20561 0.89812 0.78793 0.81201 1.90749 1.69995 1.42071 1.38020 1.48171 1.07697 1.54069 1.24311 1.21725 0.78613 0.97819 1.02913 1.21625 1.01271 0.94324 0.97605 1.21107 0.93669 0.97503 0.94999 1.22655 0.97768 0.99318 0.96294 1.21985 0.95146 0.88841 0.95311 1.44851 1.14448 1.20103 1.54501 1.20157 0.96511 1.10769 1.17289 0.90562 1.25851 0.92969 1.01867 1.01493 1.70891 1.20996 1.34270 1.30982 0.83800 0.73301 0.75803 0.76387 1.23140 1.22831 1.21432 1.21538 0.88398 0.92607 0.95349 1.21737 0.95478 0.95788 1.02543 1.21835 0.95861 0.92903 0.90996 1.44937 1.71400 1.13208 1.08895 1.15848 0.77651 0.84807 0.80580 1.42971 1.73758 1.14830 1.12197 1.90943 1.57561 1.14344 1.84713 0.91436 0.92437 0.91604 0.87295 0.88365 0.89210 0.91313 0.91990 0.89634 0.91322 0.91543 0.93852 0.95658 0.92899 0.95946 0.93996 0.90407 0.91576 0.89953 0.90950 0.77434 0.77736 0.75572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.10 9.48 37.16 0.35 -0.75 16 2 C 0.18 1.52 2.13 -67.93 -0.15 1.37 16 3 H 0.10 1.16 7.39 -51.93 -0.38 0.77 16 4 C -0.15 -1.01 3.59 -27.88 -0.10 -1.11 16 5 C 0.51 5.48 7.56 -10.98 -0.08 5.40 16 6 O -0.53 -7.94 14.76 5.56 0.08 -7.86 16 7 N -0.61 -6.30 2.96 -172.56 -0.51 -6.81 16 8 C 0.11 1.38 6.12 -3.63 -0.02 1.36 16 9 C -0.11 -1.55 4.87 -27.01 -0.13 -1.68 16 10 C -0.07 -1.00 0.55 -153.98 -0.08 -1.09 16 11 C -0.12 -1.83 4.91 -25.24 -0.12 -1.96 16 12 C 0.11 2.32 4.24 -2.96 -0.01 2.31 16 13 N -0.61 -14.36 3.31 -170.17 -0.56 -14.93 16 14 C -0.32 -9.02 10.56 -15.06 -0.16 -9.18 16 15 H 0.08 2.28 8.06 -52.48 -0.42 1.85 16 16 C -0.02 -0.66 5.50 -17.43 -0.10 -0.76 16 17 N -0.93 -29.20 13.70 55.49 0.76 -28.44 16 18 Si 1.07 26.73 24.53 -169.99 -4.17 22.57 16 19 H -0.30 -7.77 7.11 56.52 0.40 -7.37 16 20 H -0.30 -7.20 6.84 56.52 0.39 -6.81 16 21 H -0.29 -6.51 5.43 56.52 0.31 -6.21 16 22 C 0.15 2.73 6.16 -2.74 -0.02 2.71 16 23 C -0.12 -1.16 4.84 -26.99 -0.13 -1.29 16 24 C 0.11 0.85 6.07 -3.61 -0.02 0.83 16 25 N -0.73 -6.50 4.22 -58.68 -0.25 -6.75 16 26 C 0.71 8.15 8.80 -86.92 -0.77 7.38 16 27 N -0.87 -6.42 8.88 27.63 0.25 -6.18 16 28 O -0.60 -9.51 16.84 5.29 0.09 -9.42 16 29 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.11 0.51 7.93 -51.93 -0.41 0.10 16 33 H 0.10 0.44 7.70 -51.93 -0.40 0.04 16 34 H 0.09 1.24 6.99 -51.93 -0.36 0.88 16 35 H 0.07 0.84 6.55 -51.93 -0.34 0.50 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.09 1.44 7.82 -51.93 -0.41 1.03 16 38 H 0.07 0.91 6.17 -51.93 -0.32 0.59 16 39 H 0.07 0.90 7.98 -51.93 -0.41 0.49 16 40 H 0.04 0.96 6.79 -51.93 -0.35 0.60 16 41 H 0.03 0.57 3.81 -51.93 -0.20 0.38 16 42 H 0.26 8.10 8.73 -40.82 -0.36 7.75 16 43 H 0.02 0.42 8.00 -51.93 -0.42 0.00 16 44 H 0.04 0.80 8.03 -51.93 -0.42 0.38 16 45 H 0.08 0.72 8.09 -51.93 -0.42 0.30 16 46 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 47 H 0.08 0.42 5.91 -51.93 -0.31 0.11 16 48 H 0.07 0.57 7.62 -51.93 -0.40 0.17 16 49 H 0.39 2.61 8.62 -40.82 -0.35 2.26 16 50 H 0.40 1.79 8.84 -40.82 -0.36 1.43 16 51 H 0.41 2.68 8.93 -40.82 -0.36 2.31 16 LS Contribution 384.63 15.07 5.80 5.80 Total: -1.00 -37.78 384.63 -8.48 -46.26 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -8.42 Total: 2.20 kcal Atomic # 6 Polarization: 5.09 SS G_CDS: -1.54 Total: 3.55 kcal Atomic # 7 Polarization: -62.77 SS G_CDS: -0.32 Total: -63.09 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: 0.17 Total: -17.28 kcal Atomic # 14 Polarization: 26.73 SS G_CDS: -4.17 Total: 22.57 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -37.78 -8.48 -46.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482068639.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.820 kcal (2) G-P(sol) polarization free energy of solvation -37.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds