Wall clock time and date at job start Tue Mar 31 2020 22:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47437 * 2 1 4 4 N 1.46511 * 109.47075 * 240.00615 * 2 1 3 5 5 C 1.36931 * 120.00035 * 84.99839 * 4 2 1 6 6 H 1.08005 * 119.99858 * 359.97438 * 5 4 2 7 7 C 1.38815 * 120.00163 * 180.02562 * 5 4 2 8 8 N 1.31618 * 119.99825 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00228 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47032 * 359.97438 * 9 7 5 11 11 H 1.48490 * 109.47348 * 119.99376 * 9 7 5 12 12 H 1.48502 * 109.46982 * 239.99718 * 9 7 5 13 13 C 1.52998 * 109.47573 * 120.00733 * 2 1 3 14 14 H 1.09002 * 109.49918 * 179.97438 * 13 2 1 15 15 C 1.53036 * 109.49372 * 300.06370 * 13 2 1 16 16 C 1.53109 * 109.50477 * 181.31299 * 15 13 2 17 17 C 1.53194 * 109.33021 * 298.65929 * 16 15 13 18 18 N 1.46925 * 108.77661 * 54.63469 * 17 16 15 19 19 C 1.34772 * 120.63360 * 126.36788 * 18 17 16 20 20 O 1.21282 * 119.99859 * 180.02562 * 19 18 17 21 21 C 1.50701 * 119.99883 * 0.02562 * 19 18 17 22 22 N 1.46500 * 109.47006 * 179.97438 * 21 19 18 23 23 C 1.46375 * 119.33395 * 90.00001 * 22 21 19 24 24 C 1.53240 * 109.15803 * 209.03819 * 23 22 21 25 25 C 1.53241 * 108.55899 * 304.51935 * 24 23 22 26 26 N 1.46374 * 109.15455 * 55.48061 * 25 24 23 27 27 C 1.34137 * 119.32774 * 269.72797 * 22 21 19 28 28 O 1.21583 * 118.70032 * 359.42805 * 27 22 21 29 29 C 1.46931 * 118.73466 * 306.39203 * 18 17 16 30 30 H 1.08996 * 109.47083 * 59.99854 * 1 2 3 31 31 H 1.09004 * 109.46788 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47005 * 299.99258 * 1 2 3 33 33 H 0.97000 * 119.99705 * 265.00288 * 4 2 1 34 34 H 0.96999 * 120.00465 * 180.02562 * 8 7 5 35 35 H 1.08997 * 109.46472 * 301.36555 * 15 13 2 36 36 H 1.09003 * 109.46509 * 61.32997 * 15 13 2 37 37 H 1.09002 * 109.48980 * 178.70051 * 16 15 13 38 38 H 1.08999 * 109.51108 * 58.63043 * 16 15 13 39 39 H 1.08995 * 109.58354 * 294.84465 * 17 16 15 40 40 H 1.08997 * 109.70131 * 174.48969 * 17 16 15 41 41 H 1.08993 * 109.46834 * 299.99901 * 21 19 18 42 42 H 1.08999 * 109.47079 * 59.99976 * 21 19 18 43 43 H 1.09011 * 109.51899 * 328.94117 * 23 22 21 44 44 H 1.09001 * 109.52246 * 89.13079 * 23 22 21 45 45 H 1.09002 * 109.61832 * 64.24219 * 24 23 22 46 46 H 1.09000 * 109.62020 * 184.79345 * 24 23 22 47 47 H 1.08999 * 109.52303 * 175.38226 * 25 24 23 48 48 H 1.09005 * 109.52495 * 295.57095 * 25 24 23 49 49 H 0.97006 * 119.32966 * 150.96416 * 26 25 24 50 50 H 1.09004 * 109.58377 * 293.81884 * 29 18 17 51 51 H 1.09007 * 109.58589 * 173.40006 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1491 -0.0073 -2.3758 6 1 1.8918 1.0405 -2.4243 7 6 2.6113 -0.6617 -3.5094 8 7 2.9243 -1.9387 -3.4505 9 14 2.7903 0.2705 -5.1183 10 1 2.3763 1.6829 -4.9207 11 1 4.2071 0.2268 -5.5607 12 1 1.9292 -0.3572 -6.1525 13 6 2.0401 -0.7214 1.2491 14 1 3.1301 -0.7220 1.2493 15 6 1.5290 -0.0015 2.4991 16 6 2.0661 -0.7038 3.7491 17 6 1.5548 -2.1476 3.7787 18 7 1.9176 -2.8038 2.5152 19 6 2.5949 -3.9690 2.5163 20 8 2.8889 -4.5005 1.4666 21 6 2.9869 -4.6114 3.8220 22 7 3.7075 -5.8588 3.5555 23 6 5.1636 -5.8286 3.4091 24 6 5.5987 -6.9628 2.4750 25 6 5.0612 -8.2858 3.0309 26 7 3.6107 -8.1827 3.1978 27 6 3.0200 -7.0063 3.4561 28 8 1.8132 -6.9784 3.6014 29 6 1.5285 -2.1653 1.2504 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8901 33 1 2.2490 -1.6317 -1.1528 34 1 3.2477 -2.3960 -4.2425 35 1 1.8713 1.0333 2.4878 36 1 0.4392 -0.0232 2.5107 37 1 1.7209 -0.1772 4.6388 38 1 3.1559 -0.7042 3.7265 39 1 0.4709 -2.1490 3.8931 40 1 2.0109 -2.6819 4.6121 41 1 3.6298 -3.9326 4.3823 42 1 2.0910 -4.8270 4.4042 43 1 5.4672 -4.8711 2.9856 44 1 5.6306 -5.9609 4.3850 45 1 5.1920 -6.7924 1.4782 46 1 6.6870 -7.0008 2.4276 47 1 5.2914 -9.0933 2.3359 48 1 5.5253 -8.4910 3.9956 49 1 3.0659 -8.9819 3.1241 50 1 0.4423 -2.1682 1.1587 51 1 1.9692 -2.7099 0.4154 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482473003.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:42 Heat of formation + Delta-G solvation = -44.662183 kcal Electronic energy + Delta-G solvation = -31118.711062 eV Core-core repulsion = 27053.416335 eV Total energy + Delta-G solvation = -4065.294727 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.93907 -39.82249 -37.76178 -36.52491 -35.38398 -34.96187 -32.92149 -31.80442 -31.23967 -29.94242 -28.58983 -27.58143 -25.83588 -25.01675 -24.24851 -23.19466 -23.00984 -21.19250 -19.79132 -18.89544 -18.51490 -17.71029 -17.40594 -17.28875 -16.92270 -15.94658 -15.59832 -15.14639 -14.81422 -14.68329 -14.53188 -14.32286 -14.14737 -13.92738 -13.80237 -13.68999 -13.39070 -13.17548 -12.88402 -12.63760 -12.47679 -12.36789 -11.87297 -11.76328 -11.61237 -11.52467 -11.48665 -11.10060 -10.95914 -10.83262 -10.56689 -10.40262 -10.19213 -10.18381 -10.15824 -9.89434 -9.74322 -9.48755 -9.25464 -8.85451 -8.67004 -8.33834 -6.88731 -5.67995 -2.97582 2.43695 2.83810 3.05412 3.30488 3.47328 3.52311 3.55047 3.64946 4.41905 4.50031 4.61492 4.65192 4.76114 4.80498 4.89150 4.95531 5.05180 5.08512 5.15179 5.23548 5.29130 5.35362 5.41662 5.45157 5.47971 5.63826 5.72189 5.81342 5.88107 5.89678 5.92609 6.00830 6.08579 6.12665 6.18496 6.30480 6.38157 6.42462 6.48985 6.64356 6.71899 6.84606 6.93279 6.94473 7.18542 7.61028 7.67131 7.76773 8.40207 8.49552 8.50923 9.60421 10.19222 10.53185 11.54182 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.011264 B = 0.003248 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2485.235538 B = 8619.144615 C =10381.827212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.180 3.820 3 H 0.048 0.952 4 N -0.726 5.726 5 C -0.238 4.238 6 H 0.070 0.930 7 C -0.014 4.014 8 N -0.929 5.929 9 Si 0.904 3.096 10 H -0.281 1.281 11 H -0.292 1.292 12 H -0.292 1.292 13 C -0.102 4.102 14 H 0.071 0.929 15 C -0.115 4.115 16 C -0.134 4.134 17 C 0.107 3.893 18 N -0.611 5.611 19 C 0.493 3.507 20 O -0.521 6.521 21 C 0.115 3.885 22 N -0.605 5.605 23 C 0.116 3.884 24 C -0.155 4.155 25 C 0.112 3.888 26 N -0.737 5.737 27 C 0.718 3.282 28 O -0.598 6.598 29 C 0.117 3.883 30 H 0.051 0.949 31 H 0.048 0.952 32 H 0.039 0.961 33 H 0.385 0.615 34 H 0.254 0.746 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.069 0.931 40 H 0.078 0.922 41 H 0.104 0.896 42 H 0.114 0.886 43 H 0.083 0.917 44 H 0.065 0.935 45 H 0.086 0.914 46 H 0.096 0.904 47 H 0.083 0.917 48 H 0.063 0.937 49 H 0.414 0.586 50 H 0.068 0.932 51 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.487 -6.897 22.487 23.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.070 3.930 3 H 0.066 0.934 4 N -0.368 5.368 5 C -0.370 4.370 6 H 0.088 0.912 7 C -0.210 4.210 8 N -0.578 5.578 9 Si 0.735 3.265 10 H -0.206 1.206 11 H -0.220 1.220 12 H -0.220 1.220 13 C -0.122 4.122 14 H 0.090 0.910 15 C -0.153 4.153 16 C -0.172 4.172 17 C -0.016 4.016 18 N -0.346 5.346 19 C 0.279 3.721 20 O -0.395 6.395 21 C -0.013 4.013 22 N -0.342 5.342 23 C -0.007 4.007 24 C -0.194 4.194 25 C -0.013 4.013 26 N -0.395 5.395 27 C 0.419 3.581 28 O -0.477 6.477 29 C -0.004 4.004 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.220 0.780 34 H 0.064 0.936 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.096 0.904 41 H 0.122 0.878 42 H 0.132 0.868 43 H 0.102 0.898 44 H 0.083 0.917 45 H 0.105 0.895 46 H 0.114 0.886 47 H 0.101 0.899 48 H 0.081 0.919 49 H 0.251 0.749 50 H 0.087 0.913 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 4.165 -6.915 21.856 23.299 hybrid contribution 0.096 -0.056 -1.096 1.102 sum 4.261 -6.971 20.760 22.310 Atomic orbital electron populations 1.22574 0.99544 1.00899 0.99927 1.20174 0.91817 0.95220 0.85829 0.93386 1.42538 1.78103 1.10843 1.05325 1.19266 1.36469 0.93826 0.87389 0.91220 1.24748 1.02313 0.95928 0.97987 1.69690 1.50806 1.08597 1.28662 0.86163 0.77242 0.78761 0.84306 1.20624 1.21975 1.21953 1.21760 1.00797 0.94389 0.95283 0.91007 1.21631 1.00950 0.99129 0.93554 1.21933 1.01305 0.95098 0.98847 1.21729 1.00526 0.93659 0.85732 1.48180 1.56458 1.22256 1.07680 1.21125 0.78200 0.80838 0.91970 1.90756 1.53655 1.61972 1.33150 1.21224 0.99400 0.85293 0.95343 1.46323 1.06922 1.05385 1.75531 1.21571 0.79482 1.00549 0.99065 1.22207 1.02268 0.94012 1.00889 1.21517 0.80558 0.98488 1.00745 1.44872 1.08333 1.08939 1.77332 1.15319 0.84750 0.80675 0.77389 1.90944 1.12576 1.85632 1.58499 1.21785 0.99779 0.93111 0.85758 0.92940 0.93296 0.94235 0.78035 0.93599 0.91678 0.91398 0.90959 0.91615 0.91244 0.90374 0.87773 0.86813 0.89819 0.91656 0.89526 0.88573 0.89910 0.91911 0.74904 0.91349 0.88260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.06 8.79 37.16 0.33 -2.73 16 2 C 0.18 3.57 2.72 -67.93 -0.18 3.39 16 3 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 4 N -0.73 -18.62 5.04 -53.42 -0.27 -18.89 16 5 C -0.24 -6.75 9.93 -15.06 -0.15 -6.90 16 6 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 7 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 8 N -0.93 -29.20 13.06 55.49 0.72 -28.47 16 9 Si 0.90 22.94 29.55 -169.99 -5.02 17.92 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 11 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 12 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 13 C -0.10 -1.68 2.33 -90.51 -0.21 -1.90 16 14 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 15 C -0.11 -1.40 4.78 -26.66 -0.13 -1.52 16 16 C -0.13 -1.27 6.08 -26.57 -0.16 -1.43 16 17 C 0.11 1.07 6.34 -3.71 -0.02 1.05 16 18 N -0.61 -8.95 2.97 -172.77 -0.51 -9.46 16 19 C 0.49 8.00 7.76 -10.99 -0.09 7.92 16 20 O -0.52 -11.07 15.84 5.56 0.09 -10.98 16 21 C 0.11 1.36 4.15 -5.19 -0.02 1.34 16 22 N -0.61 -7.58 2.30 -181.16 -0.42 -8.00 16 23 C 0.12 1.06 6.49 -3.99 -0.03 1.04 16 24 C -0.16 -1.29 6.20 -26.48 -0.16 -1.46 16 25 C 0.11 0.80 7.20 -3.99 -0.03 0.77 16 26 N -0.74 -7.93 5.58 -65.53 -0.37 -8.29 16 27 C 0.72 10.45 8.18 -88.05 -0.72 9.73 16 28 O -0.60 -11.01 16.48 5.29 0.09 -10.92 16 29 C 0.12 2.06 5.21 -3.71 -0.02 2.04 16 30 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.05 0.90 6.32 -51.93 -0.33 0.57 16 32 H 0.04 0.58 6.46 -51.93 -0.34 0.24 16 33 H 0.38 10.71 6.17 -40.82 -0.25 10.46 16 34 H 0.25 7.73 8.31 -40.82 -0.34 7.39 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 0.80 6.50 -51.93 -0.34 0.46 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.08 0.57 5.93 -51.93 -0.31 0.26 16 41 H 0.10 0.83 7.61 -51.93 -0.40 0.44 16 42 H 0.11 1.33 7.08 -51.93 -0.37 0.97 16 43 H 0.08 0.80 8.07 -51.92 -0.42 0.38 16 44 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 45 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 47 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 49 H 0.41 3.92 8.88 -40.82 -0.36 3.56 16 50 H 0.07 1.19 6.18 -51.93 -0.32 0.87 16 51 H 0.10 2.20 5.59 -51.92 -0.29 1.91 16 LS Contribution 392.42 15.07 5.91 5.91 Total: -1.00 -38.53 392.42 -9.80 -48.34 By element: Atomic # 1 Polarization: 20.34 SS G_CDS: -8.33 Total: 12.01 kcal Atomic # 6 Polarization: 12.53 SS G_CDS: -1.69 Total: 10.84 kcal Atomic # 7 Polarization: -72.27 SS G_CDS: -0.84 Total: -73.11 kcal Atomic # 8 Polarization: -22.08 SS G_CDS: 0.18 Total: -21.90 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.02 Total: 17.92 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -38.53 -9.80 -48.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482473003.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.673 kcal (2) G-P(sol) polarization free energy of solvation -38.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds