Wall clock time and date at job start Tue Mar 31 2020 22:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47437 * 2 1 4 4 N 1.46511 * 109.47075 * 240.00615 * 2 1 3 5 5 C 1.36931 * 120.00035 * 84.99839 * 4 2 1 6 6 H 1.08005 * 119.99858 * 359.97438 * 5 4 2 7 7 C 1.38815 * 120.00163 * 180.02562 * 5 4 2 8 8 N 1.31618 * 119.99825 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00228 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47032 * 359.97438 * 9 7 5 11 11 H 1.48490 * 109.47348 * 119.99376 * 9 7 5 12 12 H 1.48502 * 109.46982 * 239.99718 * 9 7 5 13 13 C 1.52998 * 109.47573 * 120.00733 * 2 1 3 14 14 H 1.09002 * 109.49918 * 179.97438 * 13 2 1 15 15 C 1.53036 * 109.49372 * 300.06370 * 13 2 1 16 16 C 1.53109 * 109.50477 * 181.31299 * 15 13 2 17 17 C 1.53194 * 109.33021 * 298.65929 * 16 15 13 18 18 N 1.46925 * 108.77661 * 54.63469 * 17 16 15 19 19 C 1.34772 * 120.63360 * 126.36788 * 18 17 16 20 20 O 1.21282 * 119.99859 * 180.02562 * 19 18 17 21 21 C 1.50701 * 119.99883 * 0.02562 * 19 18 17 22 22 N 1.46500 * 109.47006 * 179.97438 * 21 19 18 23 23 C 1.46375 * 119.33395 * 90.00001 * 22 21 19 24 24 C 1.53240 * 109.15803 * 209.03819 * 23 22 21 25 25 C 1.53241 * 108.55899 * 304.51935 * 24 23 22 26 26 N 1.46374 * 109.15455 * 55.48061 * 25 24 23 27 27 C 1.34137 * 119.32774 * 269.72797 * 22 21 19 28 28 O 1.21583 * 118.70032 * 359.42805 * 27 22 21 29 29 C 1.46931 * 118.73466 * 306.39203 * 18 17 16 30 30 H 1.08996 * 109.47083 * 59.99854 * 1 2 3 31 31 H 1.09004 * 109.46788 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47005 * 299.99258 * 1 2 3 33 33 H 0.97000 * 119.99705 * 265.00288 * 4 2 1 34 34 H 0.96999 * 120.00465 * 180.02562 * 8 7 5 35 35 H 1.08997 * 109.46472 * 301.36555 * 15 13 2 36 36 H 1.09003 * 109.46509 * 61.32997 * 15 13 2 37 37 H 1.09002 * 109.48980 * 178.70051 * 16 15 13 38 38 H 1.08999 * 109.51108 * 58.63043 * 16 15 13 39 39 H 1.08995 * 109.58354 * 294.84465 * 17 16 15 40 40 H 1.08997 * 109.70131 * 174.48969 * 17 16 15 41 41 H 1.08993 * 109.46834 * 299.99901 * 21 19 18 42 42 H 1.08999 * 109.47079 * 59.99976 * 21 19 18 43 43 H 1.09011 * 109.51899 * 328.94117 * 23 22 21 44 44 H 1.09001 * 109.52246 * 89.13079 * 23 22 21 45 45 H 1.09002 * 109.61832 * 64.24219 * 24 23 22 46 46 H 1.09000 * 109.62020 * 184.79345 * 24 23 22 47 47 H 1.08999 * 109.52303 * 175.38226 * 25 24 23 48 48 H 1.09005 * 109.52495 * 295.57095 * 25 24 23 49 49 H 0.97006 * 119.32966 * 150.96416 * 26 25 24 50 50 H 1.09004 * 109.58377 * 293.81884 * 29 18 17 51 51 H 1.09007 * 109.58589 * 173.40006 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1491 -0.0073 -2.3758 6 1 1.8918 1.0405 -2.4243 7 6 2.6113 -0.6617 -3.5094 8 7 2.9243 -1.9387 -3.4505 9 14 2.7903 0.2705 -5.1183 10 1 2.3763 1.6829 -4.9207 11 1 4.2071 0.2268 -5.5607 12 1 1.9292 -0.3572 -6.1525 13 6 2.0401 -0.7214 1.2491 14 1 3.1301 -0.7220 1.2493 15 6 1.5290 -0.0015 2.4991 16 6 2.0661 -0.7038 3.7491 17 6 1.5548 -2.1476 3.7787 18 7 1.9176 -2.8038 2.5152 19 6 2.5949 -3.9690 2.5163 20 8 2.8889 -4.5005 1.4666 21 6 2.9869 -4.6114 3.8220 22 7 3.7075 -5.8588 3.5555 23 6 5.1636 -5.8286 3.4091 24 6 5.5987 -6.9628 2.4750 25 6 5.0612 -8.2858 3.0309 26 7 3.6107 -8.1827 3.1978 27 6 3.0200 -7.0063 3.4561 28 8 1.8132 -6.9784 3.6014 29 6 1.5285 -2.1653 1.2504 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8901 33 1 2.2490 -1.6317 -1.1528 34 1 3.2477 -2.3960 -4.2425 35 1 1.8713 1.0333 2.4878 36 1 0.4392 -0.0232 2.5107 37 1 1.7209 -0.1772 4.6388 38 1 3.1559 -0.7042 3.7265 39 1 0.4709 -2.1490 3.8931 40 1 2.0109 -2.6819 4.6121 41 1 3.6298 -3.9326 4.3823 42 1 2.0910 -4.8270 4.4042 43 1 5.4672 -4.8711 2.9856 44 1 5.6306 -5.9609 4.3850 45 1 5.1920 -6.7924 1.4782 46 1 6.6870 -7.0008 2.4276 47 1 5.2914 -9.0933 2.3359 48 1 5.5253 -8.4910 3.9956 49 1 3.0659 -8.9819 3.1241 50 1 0.4423 -2.1682 1.1587 51 1 1.9692 -2.7099 0.4154 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482473003.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:40 Heat of formation + Delta-G solvation = -74.074297 kcal Electronic energy + Delta-G solvation = -31119.986467 eV Core-core repulsion = 27053.416335 eV Total energy + Delta-G solvation = -4066.570132 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.95520 -40.98670 -39.12292 -37.50047 -36.92515 -35.88623 -34.66615 -33.16981 -32.11836 -31.50946 -29.98000 -28.86535 -26.68923 -26.36179 -25.78673 -24.64611 -23.92997 -22.38890 -20.98388 -19.98686 -19.68086 -19.26231 -18.61275 -18.33865 -18.18376 -17.09416 -16.74737 -16.57430 -16.27828 -15.94604 -15.55350 -15.49803 -15.32708 -15.19068 -15.06797 -14.72856 -14.51569 -14.44088 -14.03255 -13.94968 -13.89690 -13.42408 -13.26555 -12.97513 -12.88223 -12.71080 -12.65149 -12.37540 -12.31684 -12.26177 -12.06552 -11.88922 -11.78958 -11.72750 -11.39110 -11.25307 -11.17642 -11.01638 -10.94938 -10.17022 -9.62023 -9.56950 -9.02610 -7.93946 -5.23707 1.43119 1.45109 1.50631 1.55079 1.61771 2.01415 2.22784 2.54640 2.87530 3.38884 3.52624 3.75161 3.77749 3.89674 3.91328 3.92359 4.03749 4.11844 4.19940 4.23440 4.31103 4.35862 4.41205 4.44920 4.60895 4.63104 4.63957 4.72255 4.73228 4.83990 4.84936 4.92136 4.93748 5.10369 5.11979 5.16541 5.20029 5.24043 5.30765 5.39120 5.46548 5.51093 5.55161 5.61073 5.68867 6.06723 6.27078 6.45728 6.74531 7.19700 7.31730 7.49412 8.10605 8.31892 9.29879 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.011264 B = 0.003248 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2485.235538 B = 8619.144615 C =10381.827212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.171 3.829 3 H 0.049 0.951 4 N -0.742 5.742 5 C -0.235 4.235 6 H 0.079 0.921 7 C -0.083 4.083 8 N -0.975 5.975 9 Si 0.974 3.026 10 H -0.261 1.261 11 H -0.294 1.294 12 H -0.296 1.296 13 C -0.087 4.087 14 H 0.048 0.952 15 C -0.110 4.110 16 C -0.125 4.125 17 C 0.097 3.903 18 N -0.608 5.608 19 C 0.481 3.519 20 O -0.587 6.587 21 C 0.121 3.879 22 N -0.609 5.609 23 C 0.109 3.891 24 C -0.156 4.156 25 C 0.110 3.890 26 N -0.734 5.734 27 C 0.703 3.297 28 O -0.649 6.649 29 C 0.126 3.874 30 H 0.033 0.967 31 H 0.037 0.963 32 H 0.083 0.917 33 H 0.369 0.631 34 H 0.248 0.752 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.113 0.887 38 H 0.064 0.936 39 H 0.082 0.918 40 H 0.114 0.886 41 H 0.153 0.847 42 H 0.119 0.881 43 H 0.075 0.925 44 H 0.106 0.894 45 H 0.041 0.959 46 H 0.130 0.870 47 H 0.102 0.898 48 H 0.095 0.905 49 H 0.417 0.583 50 H 0.067 0.933 51 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.117 -5.364 26.010 27.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.062 3.938 3 H 0.067 0.933 4 N -0.383 5.383 5 C -0.367 4.367 6 H 0.097 0.903 7 C -0.274 4.274 8 N -0.626 5.626 9 Si 0.803 3.197 10 H -0.185 1.185 11 H -0.222 1.222 12 H -0.224 1.224 13 C -0.107 4.107 14 H 0.066 0.934 15 C -0.148 4.148 16 C -0.163 4.163 17 C -0.024 4.024 18 N -0.341 5.341 19 C 0.269 3.731 20 O -0.467 6.467 21 C -0.006 4.006 22 N -0.344 5.344 23 C -0.013 4.013 24 C -0.194 4.194 25 C -0.013 4.013 26 N -0.391 5.391 27 C 0.404 3.596 28 O -0.532 6.532 29 C 0.003 3.997 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.101 0.899 33 H 0.201 0.799 34 H 0.057 0.943 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.131 0.869 38 H 0.083 0.917 39 H 0.100 0.900 40 H 0.132 0.868 41 H 0.170 0.830 42 H 0.137 0.863 43 H 0.094 0.906 44 H 0.124 0.876 45 H 0.060 0.940 46 H 0.148 0.852 47 H 0.120 0.880 48 H 0.113 0.887 49 H 0.255 0.745 50 H 0.085 0.915 51 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 4.809 -5.317 25.455 26.446 hybrid contribution -0.104 -0.513 -2.150 2.213 sum 4.705 -5.830 23.306 24.480 Atomic orbital electron populations 1.22402 0.97623 1.00559 1.01102 1.20499 0.93033 0.94986 0.85248 0.93292 1.42834 1.78456 1.10336 1.06675 1.19715 1.34386 0.94211 0.88349 0.90301 1.25626 1.03262 0.96811 1.01743 1.69892 1.52982 1.10560 1.29200 0.85058 0.76708 0.78289 0.79657 1.18532 1.22160 1.22375 1.21572 0.99217 0.93769 0.96183 0.93368 1.21637 1.01584 0.99402 0.92164 1.21927 1.01235 0.94401 0.98759 1.22181 1.01835 0.94225 0.84162 1.48315 1.55542 1.21976 1.08301 1.22123 0.77313 0.80762 0.92896 1.90730 1.56356 1.63807 1.35803 1.21394 1.00777 0.85684 0.92749 1.46516 1.08272 1.04903 1.74722 1.21878 0.77708 1.00480 1.01207 1.22237 1.04181 0.94632 0.98351 1.21807 0.78298 0.98359 1.02860 1.44963 1.10079 1.08008 1.76018 1.15704 0.84433 0.81994 0.77451 1.90888 1.14797 1.86628 1.60876 1.21407 0.99047 0.93373 0.85901 0.94824 0.94388 0.89875 0.79930 0.94337 0.90430 0.90282 0.86901 0.91717 0.89974 0.86798 0.82989 0.86296 0.90633 0.87635 0.94017 0.85181 0.87995 0.88720 0.74545 0.91468 0.94076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.59 8.79 71.98 0.63 -4.96 16 2 C 0.17 6.85 2.72 44.99 0.12 6.97 16 3 H 0.05 1.96 8.08 -2.39 -0.02 1.94 16 4 N -0.74 -39.91 5.04 -322.92 -1.63 -41.54 16 5 C -0.23 -13.66 9.93 84.04 0.83 -12.83 16 6 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 7 C -0.08 -5.04 5.50 84.86 0.47 -4.57 16 8 N -0.97 -64.49 13.06 21.65 0.28 -64.21 16 9 Si 0.97 48.46 29.55 68.60 2.03 50.49 16 10 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 11 H -0.29 -14.60 7.11 99.48 0.71 -13.90 16 12 H -0.30 -14.82 7.11 99.48 0.71 -14.11 16 13 C -0.09 -2.89 2.33 -10.72 -0.02 -2.92 16 14 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 15 C -0.11 -2.34 4.78 30.64 0.15 -2.19 16 16 C -0.13 -1.85 6.08 30.70 0.19 -1.66 16 17 C 0.10 1.62 6.34 86.36 0.55 2.17 16 18 N -0.61 -17.79 2.97 -818.90 -2.43 -20.22 16 19 C 0.48 16.11 7.76 87.66 0.68 16.79 16 20 O -0.59 -27.12 15.84 -3.04 -0.05 -27.17 16 21 C 0.12 2.72 4.15 85.63 0.36 3.08 16 22 N -0.61 -14.90 2.30 -845.68 -1.95 -16.85 16 23 C 0.11 1.82 6.49 86.48 0.56 2.38 16 24 C -0.16 -2.46 6.20 30.76 0.19 -2.27 16 25 C 0.11 1.37 7.20 86.48 0.62 2.00 16 26 N -0.73 -15.60 5.58 -479.85 -2.68 -18.28 16 27 C 0.70 20.75 8.18 179.45 1.47 22.22 16 28 O -0.65 -24.74 16.48 -3.98 -0.07 -24.80 16 29 C 0.13 4.65 5.21 86.36 0.45 5.10 16 30 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.04 1.42 6.32 -2.38 -0.02 1.40 16 32 H 0.08 2.21 6.46 -2.39 -0.02 2.20 16 33 H 0.37 22.11 6.17 -92.71 -0.57 21.54 16 34 H 0.25 15.90 8.31 -92.71 -0.77 15.13 16 35 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.08 1.54 6.50 -2.39 -0.02 1.52 16 37 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.11 1.14 5.93 -2.39 -0.01 1.12 16 41 H 0.15 1.87 7.61 -2.39 -0.02 1.85 16 42 H 0.12 2.60 7.08 -2.39 -0.02 2.58 16 43 H 0.08 1.39 8.07 -2.38 -0.02 1.37 16 44 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 45 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 46 H 0.13 1.13 8.14 -2.39 -0.02 1.11 16 47 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 48 H 0.09 0.67 8.14 -2.38 -0.02 0.65 16 49 H 0.42 7.97 8.88 -92.70 -0.82 7.15 16 50 H 0.07 2.44 6.18 -2.38 -0.01 2.43 16 51 H 0.04 2.01 5.59 -2.38 -0.01 2.00 16 Total: -1.00 -94.02 392.42 0.31 -93.71 By element: Atomic # 1 Polarization: 40.00 SS G_CDS: -0.44 Total: 39.56 kcal Atomic # 6 Polarization: 22.08 SS G_CDS: 7.24 Total: 29.32 kcal Atomic # 7 Polarization: -152.69 SS G_CDS: -8.41 Total: -161.10 kcal Atomic # 8 Polarization: -51.86 SS G_CDS: -0.11 Total: -51.97 kcal Atomic # 14 Polarization: 48.46 SS G_CDS: 2.03 Total: 50.49 kcal Total: -94.02 0.31 -93.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482473003.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.637 kcal (2) G-P(sol) polarization free energy of solvation -94.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds