Wall clock time and date at job start Tue Mar 31 2020 21:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50697 * 109.47314 * 2 1 4 4 O 1.21281 * 119.99919 * 359.97438 * 3 2 1 5 5 N 1.34778 * 119.99938 * 180.02562 * 3 2 1 6 6 C 1.46494 * 120.00022 * 180.02562 * 5 3 2 7 7 C 1.50699 * 109.47355 * 179.97438 * 6 5 3 8 8 O 1.21287 * 119.99741 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00084 * 179.97438 * 7 6 5 10 10 C 1.47086 * 120.88122 * 180.02562 * 9 7 6 11 11 C 1.53243 * 108.52175 * 231.16840 * 10 9 7 12 12 N 1.46894 * 109.33440 * 306.16620 * 11 10 9 13 13 C 1.46902 * 110.99797 * 187.25355 * 12 11 10 14 14 H 1.08997 * 110.88836 * 303.87957 * 13 12 11 15 15 C 1.55158 * 111.00382 * 179.97438 * 13 12 11 16 16 C 1.54324 * 102.94262 * 206.42569 * 15 13 12 17 17 N 1.47018 * 107.27330 * 22.19295 * 16 15 13 18 18 C 1.36929 * 125.65153 * 181.02365 * 17 16 15 19 19 H 1.08006 * 120.00360 * 168.94040 * 18 17 16 20 20 C 1.38810 * 120.00379 * 348.93541 * 18 17 16 21 21 N 1.31615 * 120.00621 * 165.67981 * 20 18 17 22 22 Si 1.86805 * 119.99564 * 345.68303 * 20 18 17 23 23 H 1.48500 * 109.46995 * 65.27783 * 22 20 18 24 24 H 1.48496 * 109.47073 * 305.27894 * 22 20 18 25 25 H 1.48503 * 109.47276 * 185.28053 * 22 20 18 26 26 C 1.47429 * 108.70073 * 1.29073 * 17 16 15 27 27 C 1.46903 * 111.27273 * 63.10843 * 12 11 10 28 28 C 1.47076 * 120.88206 * 359.97438 * 9 7 6 29 29 H 1.08995 * 109.46809 * 300.00084 * 1 2 3 30 30 H 1.09008 * 109.46863 * 59.99714 * 1 2 3 31 31 H 1.08997 * 109.47581 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47001 * 240.00073 * 2 1 3 33 33 H 1.08995 * 109.47133 * 120.00441 * 2 1 3 34 34 H 0.96999 * 119.99913 * 359.97438 * 5 3 2 35 35 H 1.09004 * 109.47177 * 59.99514 * 6 5 3 36 36 H 1.09008 * 109.47154 * 299.99440 * 6 5 3 37 37 H 1.08992 * 109.62871 * 111.45216 * 10 9 7 38 38 H 1.09006 * 109.78430 * 350.97016 * 10 9 7 39 39 H 1.08996 * 109.48758 * 186.21116 * 11 10 9 40 40 H 1.08992 * 109.49459 * 66.12447 * 11 10 9 41 41 H 1.09007 * 110.71731 * 88.06693 * 15 13 12 42 42 H 1.08998 * 110.87644 * 324.85876 * 15 13 12 43 43 H 1.09009 * 109.88260 * 262.77805 * 16 15 13 44 44 H 1.08998 * 110.01604 * 141.68738 * 16 15 13 45 45 H 0.97005 * 119.99886 * 354.93334 * 21 20 18 46 46 H 1.08991 * 110.37117 * 94.48128 * 26 17 16 47 47 H 1.09001 * 110.36529 * 216.80611 * 26 17 16 48 48 H 1.09003 * 109.49102 * 56.85253 * 27 12 11 49 49 H 1.08997 * 109.49860 * 176.93247 * 27 12 11 50 50 H 1.09003 * 109.62528 * 248.53755 * 28 9 7 51 51 H 1.08996 * 109.62789 * 9.12533 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2443 2.3426 -0.0005 5 7 3.3575 1.6670 -0.0005 6 6 3.8459 3.0481 0.0000 7 6 5.3529 3.0481 -0.0001 8 8 5.9593 1.9977 -0.0011 9 7 6.0268 4.2153 -0.0001 10 6 7.4975 4.2379 -0.0008 11 6 7.9707 5.1561 1.1311 12 7 7.3293 6.4702 0.9916 13 6 7.8849 7.4318 1.9532 14 1 7.7932 7.0586 2.9732 15 6 7.2079 8.8201 1.8056 16 6 8.2929 9.7901 2.3189 17 7 9.5863 9.1014 2.1988 18 6 10.8010 9.6146 2.5678 19 1 11.6687 8.9727 2.6082 20 6 10.9173 10.9598 2.8898 21 7 11.9936 11.3979 3.5078 22 14 9.5462 12.1483 2.4461 23 1 8.3233 11.8023 3.2143 24 1 9.2605 12.0538 0.9919 25 1 9.9647 13.5336 2.7793 26 6 9.3595 7.7692 1.6094 27 6 5.8705 6.3688 1.1318 28 6 5.3111 5.5002 -0.0007 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 3.9878 0.9297 -0.0005 35 1 3.4829 3.5615 0.8905 36 1 3.4822 3.5625 -0.8896 37 1 7.8573 4.6191 -0.9564 38 1 7.8820 3.2306 0.1598 39 1 9.0531 5.2721 1.0767 40 1 7.6991 4.7189 2.0918 41 1 6.3127 8.8804 2.4247 42 1 6.9684 9.0265 0.7625 43 1 8.1021 10.0412 3.3624 44 1 8.2984 10.6972 1.7147 45 1 12.6720 10.7709 3.8037 46 1 9.5015 7.8031 0.5293 47 1 10.0303 7.0367 2.0583 48 1 5.6281 5.9147 2.0926 49 1 5.4298 7.3642 1.0781 50 1 5.4615 6.0026 -0.9562 51 1 4.2474 5.3269 0.1619 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484023500.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:35:06 Heat of formation + Delta-G solvation = -22.146815 kcal Electronic energy + Delta-G solvation = -29754.700793 eV Core-core repulsion = 25690.382406 eV Total energy + Delta-G solvation = -4064.318387 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.88560 -39.90137 -38.86736 -37.10612 -34.92821 -34.58570 -33.24717 -32.33556 -31.67232 -29.71832 -29.18393 -28.05990 -26.29306 -24.63474 -23.89403 -23.34208 -21.76810 -20.82948 -20.65117 -19.96561 -19.38121 -18.09910 -17.48524 -17.14746 -16.63343 -16.55764 -15.92380 -15.78305 -15.51212 -15.35008 -15.09196 -14.69475 -14.40412 -14.22714 -13.99341 -13.56759 -13.46697 -13.33339 -12.92146 -12.79600 -12.73965 -12.55002 -12.40648 -12.27975 -12.19196 -11.84326 -11.61704 -11.61165 -11.37286 -11.10877 -11.04446 -10.76107 -10.44192 -10.34374 -10.25676 -10.02864 -9.63665 -9.33036 -9.15876 -8.97746 -8.72049 -8.38770 -7.04296 -6.31947 -3.23597 2.07916 2.21814 2.27598 2.88958 3.40627 3.49360 3.65518 3.74141 3.90817 4.28887 4.53429 4.61081 4.61832 4.62571 4.63929 4.78541 4.81444 4.84185 4.93309 5.02801 5.08376 5.10215 5.13023 5.25877 5.33646 5.36654 5.39382 5.46240 5.48907 5.51411 5.54264 5.63808 5.75041 5.76336 5.82645 5.86015 6.03533 6.09562 6.12863 6.34678 6.45482 6.51910 6.73975 6.89398 6.96255 7.02884 7.12900 7.60928 7.66586 7.76815 8.32541 9.03123 9.54871 10.21565 11.18857 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.030524 B = 0.001960 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.083249 B =14280.121139 C =14928.590340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.143 4.143 3 C 0.513 3.487 4 O -0.541 6.541 5 N -0.721 5.721 6 C 0.100 3.900 7 C 0.511 3.489 8 O -0.543 6.543 9 N -0.606 5.606 10 C 0.118 3.882 11 C 0.041 3.959 12 N -0.526 5.526 13 C 0.068 3.932 14 H 0.052 0.948 15 C -0.121 4.121 16 C 0.112 3.888 17 N -0.613 5.613 18 C -0.321 4.321 19 H 0.078 0.922 20 C -0.022 4.022 21 N -0.929 5.929 22 Si 1.072 2.928 23 H -0.287 1.287 24 H -0.298 1.298 25 H -0.302 1.302 26 C 0.149 3.851 27 C 0.038 3.962 28 C 0.108 3.892 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.412 0.588 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.080 0.920 38 H 0.096 0.904 39 H 0.094 0.906 40 H 0.037 0.963 41 H 0.064 0.936 42 H 0.077 0.923 43 H 0.044 0.956 44 H 0.030 0.970 45 H 0.261 0.739 46 H 0.035 0.965 47 H 0.039 0.961 48 H 0.038 0.962 49 H 0.095 0.905 50 H 0.085 0.915 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.899 -21.526 -8.294 31.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.183 4.183 3 C 0.300 3.700 4 O -0.418 6.418 5 N -0.377 5.377 6 C -0.027 4.027 7 C 0.299 3.701 8 O -0.420 6.420 9 N -0.339 5.339 10 C -0.004 4.004 11 C -0.087 4.087 12 N -0.252 5.252 13 C -0.041 4.041 14 H 0.070 0.930 15 C -0.159 4.159 16 C -0.013 4.013 17 N -0.341 5.341 18 C -0.449 4.449 19 H 0.096 0.904 20 C -0.221 4.221 21 N -0.570 5.570 22 Si 0.907 3.093 23 H -0.215 1.215 24 H -0.226 1.226 25 H -0.230 1.230 26 C 0.023 3.977 27 C -0.091 4.091 28 C -0.015 4.015 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.113 0.887 33 H 0.113 0.887 34 H 0.250 0.750 35 H 0.116 0.884 36 H 0.117 0.883 37 H 0.098 0.902 38 H 0.114 0.886 39 H 0.112 0.888 40 H 0.055 0.945 41 H 0.083 0.917 42 H 0.096 0.904 43 H 0.062 0.938 44 H 0.047 0.953 45 H 0.071 0.929 46 H 0.053 0.947 47 H 0.058 0.942 48 H 0.056 0.944 49 H 0.113 0.887 50 H 0.103 0.897 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -21.350 -19.614 -8.699 30.269 hybrid contribution 0.708 -2.108 0.776 2.356 sum -20.642 -21.723 -7.923 30.996 Atomic orbital electron populations 1.21540 0.92777 1.01753 1.03447 1.21623 0.98757 0.93238 1.04673 1.20856 0.81448 0.92244 0.75431 1.90719 1.55268 1.46547 1.49275 1.45811 1.07784 1.08140 1.75996 1.21093 0.91111 0.85736 1.04782 1.20471 0.89716 0.83720 0.76226 1.90690 1.69832 1.30803 1.50717 1.48134 1.07682 1.05725 1.72363 1.21793 0.78134 1.00902 0.99618 1.22485 1.00538 0.88825 0.96893 1.61944 1.03243 1.08040 1.51928 1.22938 0.97089 0.91302 0.92765 0.93000 1.22647 0.97601 0.94032 1.01627 1.21966 0.85950 0.94784 0.98609 1.44761 1.02508 1.13439 1.73377 1.20167 0.85640 0.95035 1.44019 0.90449 1.25865 1.02270 0.95461 0.98525 1.70896 1.10480 1.37148 1.38488 0.83808 0.74453 0.75441 0.75628 1.21462 1.22640 1.23044 1.21514 0.91232 0.88274 0.96724 1.22496 0.89265 1.00635 0.96685 1.22022 0.95955 0.83042 1.00504 0.91907 0.91916 0.91924 0.88682 0.88686 0.75005 0.88353 0.88251 0.90201 0.88608 0.88770 0.94467 0.91687 0.90447 0.93779 0.95252 0.92899 0.94679 0.94229 0.94417 0.88725 0.89673 0.89309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.77 9.20 37.16 0.34 -0.43 16 2 C -0.14 -0.73 6.42 -27.88 -0.18 -0.91 16 3 C 0.51 4.35 7.83 -10.99 -0.09 4.26 16 4 O -0.54 -6.50 15.98 5.56 0.09 -6.42 16 5 N -0.72 -5.61 5.53 -61.47 -0.34 -5.95 16 6 C 0.10 0.78 4.52 -5.20 -0.02 0.76 16 7 C 0.51 4.92 7.78 -10.99 -0.09 4.84 16 8 O -0.54 -6.68 15.13 5.55 0.08 -6.59 16 9 N -0.61 -5.54 3.01 -172.43 -0.52 -6.06 16 10 C 0.12 1.17 6.59 -3.60 -0.02 1.14 16 11 C 0.04 0.46 5.52 -3.70 -0.02 0.44 16 12 N -0.53 -6.41 4.52 -223.61 -1.01 -7.42 16 13 C 0.07 1.04 2.73 -65.44 -0.18 0.86 16 14 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 15 C -0.12 -1.90 5.03 -24.90 -0.13 -2.03 16 16 C 0.11 2.39 4.62 -3.07 -0.01 2.38 16 17 N -0.61 -14.87 3.32 -169.93 -0.56 -15.44 16 18 C -0.32 -9.21 10.56 -15.06 -0.16 -9.37 16 19 H 0.08 2.33 8.06 -52.48 -0.42 1.91 16 20 C -0.02 -0.65 5.50 -17.43 -0.10 -0.75 16 21 N -0.93 -29.25 13.70 55.49 0.76 -28.49 16 22 Si 1.07 26.84 24.53 -169.99 -4.17 22.67 16 23 H -0.29 -6.53 5.43 56.52 0.31 -6.22 16 24 H -0.30 -7.20 6.84 56.52 0.39 -6.82 16 25 H -0.30 -7.73 7.11 56.52 0.40 -7.33 16 26 C 0.15 2.90 5.95 -2.41 -0.01 2.89 16 27 C 0.04 0.36 5.43 -3.67 -0.02 0.34 16 28 C 0.11 0.81 6.51 -3.58 -0.02 0.79 16 29 H 0.06 0.42 8.10 -51.93 -0.42 0.00 16 30 H 0.06 0.41 8.10 -51.92 -0.42 -0.01 16 31 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 32 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.41 2.93 7.44 -40.82 -0.30 2.62 16 35 H 0.10 0.73 7.66 -51.93 -0.40 0.33 16 36 H 0.10 0.70 8.00 -51.92 -0.42 0.29 16 37 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.10 0.99 7.07 -51.93 -0.37 0.63 16 39 H 0.09 1.10 7.05 -51.93 -0.37 0.73 16 40 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.06 0.86 7.96 -51.93 -0.41 0.45 16 42 H 0.08 1.15 8.11 -51.93 -0.42 0.73 16 43 H 0.04 0.99 6.78 -51.92 -0.35 0.64 16 44 H 0.03 0.67 3.81 -51.93 -0.20 0.47 16 45 H 0.26 8.13 8.73 -40.82 -0.36 7.77 16 46 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.04 0.77 7.87 -51.93 -0.41 0.36 16 48 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 49 H 0.09 0.84 6.64 -51.93 -0.34 0.50 16 50 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 51 H 0.09 0.48 6.02 -51.93 -0.31 0.17 16 LS Contribution 389.95 15.07 5.88 5.88 Total: -1.00 -35.42 389.95 -9.13 -44.55 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -8.63 Total: -1.94 kcal Atomic # 6 Polarization: 5.91 SS G_CDS: -0.71 Total: 5.21 kcal Atomic # 7 Polarization: -61.69 SS G_CDS: -1.67 Total: -63.37 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: 0.17 Total: -13.01 kcal Atomic # 14 Polarization: 26.84 SS G_CDS: -4.17 Total: 22.67 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -35.42 -9.13 -44.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484023500.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.406 kcal (2) G-P(sol) polarization free energy of solvation -35.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds