Wall clock time and date at job start Tue Mar 31 2020 21:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50697 * 109.47314 * 2 1 4 4 O 1.21281 * 119.99919 * 359.97438 * 3 2 1 5 5 N 1.34778 * 119.99938 * 180.02562 * 3 2 1 6 6 C 1.46494 * 120.00022 * 180.02562 * 5 3 2 7 7 C 1.50699 * 109.47355 * 179.97438 * 6 5 3 8 8 O 1.21287 * 119.99741 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00084 * 179.97438 * 7 6 5 10 10 C 1.47086 * 120.88122 * 180.02562 * 9 7 6 11 11 C 1.53243 * 108.52175 * 231.16840 * 10 9 7 12 12 N 1.46894 * 109.33440 * 306.16620 * 11 10 9 13 13 C 1.46902 * 110.99797 * 187.25355 * 12 11 10 14 14 H 1.08997 * 110.88836 * 303.87957 * 13 12 11 15 15 C 1.55158 * 111.00382 * 179.97438 * 13 12 11 16 16 C 1.54324 * 102.94262 * 206.42569 * 15 13 12 17 17 N 1.47018 * 107.27330 * 22.19295 * 16 15 13 18 18 C 1.36929 * 125.65153 * 181.02365 * 17 16 15 19 19 H 1.08006 * 120.00360 * 168.94040 * 18 17 16 20 20 C 1.38810 * 120.00379 * 348.93541 * 18 17 16 21 21 N 1.31615 * 120.00621 * 165.67981 * 20 18 17 22 22 Si 1.86805 * 119.99564 * 345.68303 * 20 18 17 23 23 H 1.48500 * 109.46995 * 65.27783 * 22 20 18 24 24 H 1.48496 * 109.47073 * 305.27894 * 22 20 18 25 25 H 1.48503 * 109.47276 * 185.28053 * 22 20 18 26 26 C 1.47429 * 108.70073 * 1.29073 * 17 16 15 27 27 C 1.46903 * 111.27273 * 63.10843 * 12 11 10 28 28 C 1.47076 * 120.88206 * 359.97438 * 9 7 6 29 29 H 1.08995 * 109.46809 * 300.00084 * 1 2 3 30 30 H 1.09008 * 109.46863 * 59.99714 * 1 2 3 31 31 H 1.08997 * 109.47581 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47001 * 240.00073 * 2 1 3 33 33 H 1.08995 * 109.47133 * 120.00441 * 2 1 3 34 34 H 0.96999 * 119.99913 * 359.97438 * 5 3 2 35 35 H 1.09004 * 109.47177 * 59.99514 * 6 5 3 36 36 H 1.09008 * 109.47154 * 299.99440 * 6 5 3 37 37 H 1.08992 * 109.62871 * 111.45216 * 10 9 7 38 38 H 1.09006 * 109.78430 * 350.97016 * 10 9 7 39 39 H 1.08996 * 109.48758 * 186.21116 * 11 10 9 40 40 H 1.08992 * 109.49459 * 66.12447 * 11 10 9 41 41 H 1.09007 * 110.71731 * 88.06693 * 15 13 12 42 42 H 1.08998 * 110.87644 * 324.85876 * 15 13 12 43 43 H 1.09009 * 109.88260 * 262.77805 * 16 15 13 44 44 H 1.08998 * 110.01604 * 141.68738 * 16 15 13 45 45 H 0.97005 * 119.99886 * 354.93334 * 21 20 18 46 46 H 1.08991 * 110.37117 * 94.48128 * 26 17 16 47 47 H 1.09001 * 110.36529 * 216.80611 * 26 17 16 48 48 H 1.09003 * 109.49102 * 56.85253 * 27 12 11 49 49 H 1.08997 * 109.49860 * 176.93247 * 27 12 11 50 50 H 1.09003 * 109.62528 * 248.53755 * 28 9 7 51 51 H 1.08996 * 109.62789 * 9.12533 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2443 2.3426 -0.0005 5 7 3.3575 1.6670 -0.0005 6 6 3.8459 3.0481 0.0000 7 6 5.3529 3.0481 -0.0001 8 8 5.9593 1.9977 -0.0011 9 7 6.0268 4.2153 -0.0001 10 6 7.4975 4.2379 -0.0008 11 6 7.9707 5.1561 1.1311 12 7 7.3293 6.4702 0.9916 13 6 7.8849 7.4318 1.9532 14 1 7.7932 7.0586 2.9732 15 6 7.2079 8.8201 1.8056 16 6 8.2929 9.7901 2.3189 17 7 9.5863 9.1014 2.1988 18 6 10.8010 9.6146 2.5678 19 1 11.6687 8.9727 2.6082 20 6 10.9173 10.9598 2.8898 21 7 11.9936 11.3979 3.5078 22 14 9.5462 12.1483 2.4461 23 1 8.3233 11.8023 3.2143 24 1 9.2605 12.0538 0.9919 25 1 9.9647 13.5336 2.7793 26 6 9.3595 7.7692 1.6094 27 6 5.8705 6.3688 1.1318 28 6 5.3111 5.5002 -0.0007 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 3.9878 0.9297 -0.0005 35 1 3.4829 3.5615 0.8905 36 1 3.4822 3.5625 -0.8896 37 1 7.8573 4.6191 -0.9564 38 1 7.8820 3.2306 0.1598 39 1 9.0531 5.2721 1.0767 40 1 7.6991 4.7189 2.0918 41 1 6.3127 8.8804 2.4247 42 1 6.9684 9.0265 0.7625 43 1 8.1021 10.0412 3.3624 44 1 8.2984 10.6972 1.7147 45 1 12.6720 10.7709 3.8037 46 1 9.5015 7.8031 0.5293 47 1 10.0303 7.0367 2.0583 48 1 5.6281 5.9147 2.0926 49 1 5.4298 7.3642 1.0781 50 1 5.4615 6.0026 -0.9562 51 1 4.2474 5.3269 0.1619 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484023500.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:35:05 Heat of formation + Delta-G solvation = -50.251081 kcal Electronic energy + Delta-G solvation = -29755.919485 eV Core-core repulsion = 25690.382406 eV Total energy + Delta-G solvation = -4065.537079 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.63512 -40.66025 -39.97270 -38.32811 -35.77119 -35.59827 -34.25417 -33.70704 -32.53328 -31.22297 -30.33785 -29.09110 -27.40824 -25.60516 -24.90047 -24.50279 -22.65217 -22.29359 -21.43075 -21.28954 -20.14454 -19.58671 -18.75935 -17.91392 -17.44938 -17.24960 -17.08394 -16.94880 -16.42279 -16.23279 -16.00594 -15.69533 -15.52636 -15.20945 -15.05030 -14.93980 -14.51545 -14.31328 -14.21698 -13.98313 -13.72117 -13.45473 -13.35944 -13.14508 -13.02561 -13.01534 -12.65229 -12.62071 -12.36118 -12.31946 -12.15032 -12.01897 -11.67229 -11.64737 -11.40215 -11.08279 -11.05124 -10.99891 -10.67780 -10.27431 -9.93355 -9.34934 -9.09564 -8.66696 -5.49066 1.35549 1.40816 1.51328 1.60089 1.60245 1.73754 2.29017 2.55640 2.65972 3.14520 3.24495 3.38250 3.56745 3.77794 3.83640 3.88342 3.99481 4.11469 4.18194 4.19890 4.21668 4.24764 4.30077 4.31504 4.34734 4.37954 4.46274 4.56394 4.69353 4.71522 4.74908 4.81498 4.85481 4.91623 4.94556 5.01522 5.03287 5.07658 5.11656 5.19297 5.22737 5.31162 5.39494 5.51970 5.94289 6.03116 6.09763 6.23835 6.44217 6.81425 6.88047 7.16420 7.43425 8.08063 8.86313 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.030524 B = 0.001960 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.083249 B =14280.121139 C =14928.590340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.139 4.139 3 C 0.510 3.490 4 O -0.581 6.581 5 N -0.719 5.719 6 C 0.103 3.897 7 C 0.513 3.487 8 O -0.573 6.573 9 N -0.606 5.606 10 C 0.125 3.875 11 C 0.045 3.955 12 N -0.527 5.527 13 C 0.087 3.913 14 H 0.047 0.953 15 C -0.106 4.106 16 C 0.099 3.901 17 N -0.635 5.635 18 C -0.313 4.313 19 H 0.043 0.957 20 C -0.081 4.081 21 N -0.965 5.965 22 Si 1.113 2.887 23 H -0.248 1.248 24 H -0.284 1.284 25 H -0.314 1.314 26 C 0.145 3.855 27 C 0.035 3.965 28 C 0.110 3.890 29 H 0.047 0.953 30 H 0.048 0.952 31 H 0.083 0.917 32 H 0.116 0.884 33 H 0.115 0.885 34 H 0.416 0.584 35 H 0.107 0.893 36 H 0.111 0.889 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.032 0.968 41 H 0.101 0.899 42 H 0.094 0.906 43 H 0.034 0.966 44 H 0.026 0.974 45 H 0.246 0.754 46 H 0.035 0.965 47 H 0.028 0.972 48 H 0.038 0.962 49 H 0.110 0.890 50 H 0.094 0.906 51 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.520 -22.558 -9.428 34.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.179 4.179 3 C 0.299 3.701 4 O -0.461 6.461 5 N -0.374 5.374 6 C -0.024 4.024 7 C 0.302 3.698 8 O -0.453 6.453 9 N -0.338 5.338 10 C 0.002 3.998 11 C -0.084 4.084 12 N -0.252 5.252 13 C -0.023 4.023 14 H 0.065 0.935 15 C -0.144 4.144 16 C -0.026 4.026 17 N -0.363 5.363 18 C -0.441 4.441 19 H 0.061 0.939 20 C -0.273 4.273 21 N -0.609 5.609 22 Si 0.940 3.060 23 H -0.173 1.173 24 H -0.211 1.211 25 H -0.243 1.243 26 C 0.020 3.980 27 C -0.093 4.093 28 C -0.012 4.012 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.102 0.898 32 H 0.134 0.866 33 H 0.133 0.867 34 H 0.255 0.745 35 H 0.125 0.875 36 H 0.129 0.871 37 H 0.102 0.898 38 H 0.107 0.893 39 H 0.101 0.899 40 H 0.050 0.950 41 H 0.119 0.881 42 H 0.113 0.887 43 H 0.052 0.948 44 H 0.044 0.956 45 H 0.055 0.945 46 H 0.053 0.947 47 H 0.046 0.954 48 H 0.056 0.944 49 H 0.128 0.872 50 H 0.112 0.888 51 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -25.001 -20.703 -9.849 33.922 hybrid contribution 1.924 -1.924 1.111 2.939 sum -23.077 -22.628 -8.738 33.480 Atomic orbital electron populations 1.21543 0.93290 1.02661 1.02030 1.21697 0.98225 0.91344 1.06600 1.21443 0.81149 0.93188 0.74347 1.90699 1.56137 1.47969 1.51306 1.45856 1.07791 1.08350 1.75413 1.21128 0.89534 0.86112 1.05666 1.20747 0.90360 0.83282 0.75432 1.90680 1.70567 1.31907 1.52140 1.48200 1.07327 1.06406 1.71887 1.21639 0.78942 1.00102 0.99120 1.22434 1.00003 0.88714 0.97223 1.61906 1.05074 1.07707 1.50521 1.22581 0.94095 0.92438 0.93149 0.93535 1.22621 0.96753 0.91844 1.03140 1.22162 0.86033 0.96110 0.98255 1.44853 1.02275 1.15449 1.73719 1.20063 0.86851 0.94745 1.42462 0.93900 1.27214 1.03885 0.97696 0.98543 1.71003 1.11617 1.36984 1.41280 0.83356 0.73424 0.72557 0.76626 1.17306 1.21125 1.24335 1.21632 0.94366 0.85889 0.96119 1.22648 0.87053 1.02031 0.97535 1.22169 0.97057 0.81785 1.00193 0.93396 0.93285 0.89814 0.86574 0.86725 0.74540 0.87539 0.87122 0.89790 0.89280 0.89883 0.94993 0.88100 0.88730 0.94762 0.95631 0.94500 0.94736 0.95378 0.94381 0.87177 0.88761 0.86643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 9.20 71.98 0.66 -0.67 16 2 C -0.14 -1.10 6.42 29.85 0.19 -0.91 16 3 C 0.51 7.73 7.83 87.66 0.69 8.41 16 4 O -0.58 -13.25 15.98 -3.03 -0.05 -13.30 16 5 N -0.72 -9.69 5.53 -466.79 -2.58 -12.27 16 6 C 0.10 1.34 4.52 85.63 0.39 1.73 16 7 C 0.51 8.74 7.78 87.66 0.68 9.42 16 8 O -0.57 -13.27 15.13 -3.05 -0.05 -13.32 16 9 N -0.61 -9.48 3.01 -817.82 -2.46 -11.94 16 10 C 0.12 2.27 6.59 86.35 0.57 2.84 16 11 C 0.05 0.94 5.52 86.39 0.48 1.42 16 12 N -0.53 -11.32 4.52 -861.36 -3.90 -15.22 16 13 C 0.09 2.45 2.73 46.39 0.13 2.58 16 14 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 15 C -0.11 -2.89 5.03 31.78 0.16 -2.73 16 16 C 0.10 3.97 4.62 86.73 0.40 4.37 16 17 N -0.63 -30.64 3.32 -691.54 -2.30 -32.94 16 18 C -0.31 -18.44 10.56 84.03 0.89 -17.55 16 19 H 0.04 2.74 8.06 -2.91 -0.02 2.72 16 20 C -0.08 -4.90 5.50 84.86 0.47 -4.43 16 21 N -0.96 -63.00 13.70 21.65 0.30 -62.70 16 22 Si 1.11 53.83 24.53 68.60 1.68 55.52 16 23 H -0.25 -10.39 5.43 99.48 0.54 -9.85 16 24 H -0.28 -12.93 6.84 99.48 0.68 -12.25 16 25 H -0.31 -15.69 7.11 99.48 0.71 -14.99 16 26 C 0.15 5.59 5.95 86.93 0.52 6.10 16 27 C 0.04 0.53 5.43 86.40 0.47 1.00 16 28 C 0.11 1.22 6.51 86.37 0.56 1.78 16 29 H 0.05 0.60 8.10 -2.39 -0.02 0.58 16 30 H 0.05 0.60 8.10 -2.38 -0.02 0.58 16 31 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.12 0.46 8.14 -2.38 -0.02 0.44 16 33 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.42 5.10 7.44 -92.71 -0.69 4.41 16 35 H 0.11 1.26 7.66 -2.38 -0.02 1.24 16 36 H 0.11 1.23 8.00 -2.38 -0.02 1.21 16 37 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.09 1.77 7.07 -2.38 -0.02 1.75 16 39 H 0.08 1.91 7.05 -2.39 -0.02 1.89 16 40 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.10 2.11 7.96 -2.38 -0.02 2.09 16 42 H 0.09 2.32 8.11 -2.39 -0.02 2.30 16 43 H 0.03 1.44 6.78 -2.38 -0.02 1.43 16 44 H 0.03 1.09 3.81 -2.39 -0.01 1.08 16 45 H 0.25 16.18 8.73 -92.70 -0.81 15.37 16 46 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 47 H 0.03 1.12 7.87 -2.39 -0.02 1.10 16 48 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 49 H 0.11 1.36 6.64 -2.39 -0.02 1.34 16 50 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 51 H 0.12 0.72 6.02 -2.39 -0.01 0.71 16 Total: -1.00 -80.31 389.95 -2.10 -82.40 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: 0.01 Total: 10.42 kcal Atomic # 6 Polarization: 6.10 SS G_CDS: 7.24 Total: 13.34 kcal Atomic # 7 Polarization: -124.13 SS G_CDS: -10.94 Total: -135.07 kcal Atomic # 8 Polarization: -26.53 SS G_CDS: -0.09 Total: -26.62 kcal Atomic # 14 Polarization: 53.83 SS G_CDS: 1.68 Total: 55.52 kcal Total: -80.31 -2.10 -82.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484023500.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.154 kcal (2) G-P(sol) polarization free energy of solvation -80.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds