Wall clock time and date at job start Tue Mar 31 2020 21:41:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.87473 * 2 1 4 4 C 1.54328 * 109.88494 * 238.82703 * 2 1 3 5 5 C 1.55155 * 102.94193 * 218.39140 * 4 2 1 6 6 H 1.09003 * 110.99799 * 277.42087 * 5 4 2 7 7 N 1.46902 * 111.00530 * 153.57512 * 5 4 2 8 8 C 1.46899 * 111.00109 * 161.34780 * 7 5 4 9 9 C 1.50700 * 109.47022 * 180.02562 * 8 7 5 10 10 O 1.21297 * 120.00099 * 359.97438 * 9 8 7 11 11 N 1.34776 * 119.99933 * 180.02562 * 9 8 7 12 12 C 1.37093 * 120.00157 * 180.02562 * 11 9 8 13 13 H 1.08005 * 119.99943 * 359.97438 * 12 11 9 14 14 C 1.38951 * 120.00446 * 179.97438 * 12 11 9 15 15 N 1.31410 * 119.99609 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00209 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47211 * 59.99877 * 16 14 12 18 18 H 1.48500 * 109.47097 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47139 * 299.99826 * 16 14 12 20 20 C 1.54906 * 101.58328 * 35.49714 * 5 4 2 21 21 N 1.47019 * 109.88752 * 121.01638 * 2 1 3 22 22 C 1.34780 * 125.64491 * 298.32648 * 21 2 1 23 23 O 1.21277 * 120.00173 * 359.97438 * 22 21 2 24 24 C 1.50701 * 119.99720 * 179.97438 * 22 21 2 25 25 N 1.46899 * 109.46768 * 179.97438 * 24 22 21 26 26 C 1.48537 * 111.00184 * 52.60731 * 25 24 22 27 27 C 1.54935 * 103.22806 * 159.71664 * 26 25 24 28 28 C 1.54596 * 102.92441 * 322.58622 * 27 26 25 29 29 C 1.47908 * 110.99878 * 169.99965 * 25 24 22 30 30 H 1.09002 * 109.47153 * 300.43629 * 1 2 3 31 31 H 1.09001 * 109.46832 * 180.43820 * 1 2 3 32 32 H 1.09004 * 109.47261 * 60.43801 * 1 2 3 33 33 H 1.09007 * 110.71513 * 336.75055 * 4 2 1 34 34 H 1.09000 * 110.72424 * 100.02040 * 4 2 1 35 35 H 1.00900 * 111.00131 * 37.39058 * 7 5 4 36 36 H 1.09005 * 109.47023 * 299.99753 * 8 7 5 37 37 H 1.08994 * 109.47400 * 60.00096 * 8 7 5 38 38 H 0.96995 * 120.00339 * 359.97438 * 11 9 8 39 39 H 0.97001 * 120.00036 * 180.02562 * 15 14 12 40 40 H 1.09001 * 110.36496 * 204.15090 * 20 5 4 41 41 H 1.09002 * 110.36576 * 81.83622 * 20 5 4 42 42 H 1.09003 * 109.47247 * 300.00045 * 24 22 21 43 43 H 1.08997 * 109.47294 * 59.99833 * 24 22 21 44 44 H 1.08995 * 110.66167 * 278.15502 * 26 25 24 45 45 H 1.08993 * 110.66405 * 41.28230 * 26 25 24 46 46 H 1.08990 * 110.72487 * 204.22739 * 27 26 25 47 47 H 1.09001 * 110.87574 * 81.00945 * 27 26 25 48 48 H 1.09003 * 110.31040 * 263.04034 * 28 27 26 49 49 H 1.08994 * 110.39763 * 140.91405 * 28 27 26 50 50 H 1.09005 * 109.91513 * 333.51425 * 29 25 24 51 51 H 1.09002 * 109.91866 * 94.60335 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0252 0.0000 4 6 2.0549 -0.7512 -1.2417 5 6 3.2876 -1.5152 -0.6903 6 1 4.1654 -0.8697 -0.6593 7 7 3.5539 -2.7249 -1.4800 8 6 4.9267 -3.2020 -1.2656 9 6 5.1625 -4.4409 -2.0906 10 8 4.2742 -4.8832 -2.7882 11 7 6.3601 -5.0580 -2.0525 12 6 6.5748 -6.1847 -2.8033 13 1 5.7841 -6.5781 -3.4251 14 6 7.8096 -6.8207 -2.7645 15 7 8.7718 -6.3417 -2.0084 16 14 8.1019 -8.3563 -3.7871 17 1 7.9072 -8.0384 -5.2245 18 1 9.4898 -8.8383 -3.5708 19 1 7.1414 -9.4128 -3.3793 20 6 2.8145 -1.8783 0.7394 21 7 2.0301 -0.7124 1.1848 22 6 1.8086 -0.3578 2.4662 23 8 1.1459 0.6264 2.7171 24 6 2.3844 -1.1844 3.5870 25 7 2.0036 -0.5933 4.8768 26 6 0.5348 -0.3867 4.9548 27 6 0.2719 -0.2818 6.4781 28 6 1.2560 -1.3163 7.0708 29 6 2.3434 -1.4988 5.9958 30 1 -0.3633 0.5206 0.8861 31 1 -0.3633 -1.0277 0.0079 32 1 -0.3634 0.5070 -0.8939 33 1 1.3051 -1.4482 -1.6163 34 1 2.3529 -0.0488 -2.0201 35 1 3.3762 -2.5634 -2.4600 36 1 5.6318 -2.4266 -1.5654 37 1 5.0697 -3.4349 -0.2105 38 1 7.0703 -4.7045 -1.4944 39 1 9.6340 -6.7854 -1.9815 40 1 3.6717 -2.0318 1.3950 41 1 2.1887 -2.7705 0.7167 42 1 1.9972 -2.2014 3.5245 43 1 3.4710 -1.2035 3.5031 44 1 0.2489 0.5363 4.4505 45 1 0.0035 -1.2386 4.5305 46 1 -0.7580 -0.5517 6.7112 47 1 0.4989 0.7198 6.8433 48 1 0.7453 -2.2611 7.2566 49 1 1.6959 -0.9370 7.9931 50 1 2.3520 -2.5319 5.6479 51 1 3.3199 -1.2362 6.4027 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486130753.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:41:50 Heat of formation + Delta-G solvation = -53.560516 kcal Electronic energy + Delta-G solvation = -29570.627295 eV Core-core repulsion = 25504.946708 eV Total energy + Delta-G solvation = -4065.680587 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.64754 -39.13979 -38.29378 -37.44636 -34.87402 -33.84257 -32.96380 -31.70939 -31.29105 -30.07487 -29.05421 -26.99381 -26.27880 -25.99057 -24.09839 -22.33215 -21.33083 -21.10972 -20.81562 -19.39985 -18.98005 -17.93437 -17.31799 -17.00920 -16.32413 -15.98564 -15.81877 -15.43784 -15.19411 -14.70124 -14.55927 -14.32308 -14.09681 -13.85631 -13.72379 -13.49956 -13.33909 -13.21814 -12.92267 -12.68611 -12.43433 -12.41937 -12.24568 -12.15608 -11.81908 -11.70030 -11.58289 -11.54796 -11.26001 -11.17515 -11.13335 -11.04409 -10.86151 -10.81309 -10.47714 -10.25570 -9.71672 -9.54707 -8.85429 -8.65969 -8.55625 -8.22100 -8.01479 -6.46178 -3.87244 2.46237 2.64081 3.16859 3.23168 3.27251 3.72541 3.84416 3.94961 4.14284 4.28764 4.34106 4.39921 4.50041 4.66555 4.70009 4.81217 4.97583 4.97684 5.03912 5.04701 5.09085 5.17617 5.21148 5.25904 5.28168 5.40066 5.45105 5.47962 5.54232 5.57769 5.59322 5.66309 5.69824 5.76096 5.83352 5.86587 5.90867 5.93814 5.99742 6.09418 6.20610 6.23107 6.60704 6.63822 7.07810 7.33931 7.50339 7.50907 8.00940 8.03176 8.55785 9.13003 9.48829 9.99849 10.71330 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.013792 B = 0.002139 C = 0.001906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.735664 B =13089.111403 C =14689.393354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.140 3.860 3 H 0.076 0.924 4 C -0.130 4.130 5 C 0.074 3.926 6 H 0.060 0.940 7 N -0.657 5.657 8 C 0.049 3.951 9 C 0.439 3.561 10 O -0.583 6.583 11 N -0.562 5.562 12 C -0.301 4.301 13 H 0.103 0.897 14 C 0.023 3.977 15 N -0.901 5.901 16 Si 0.931 3.069 17 H -0.274 1.274 18 H -0.284 1.284 19 H -0.273 1.273 20 C 0.106 3.894 21 N -0.614 5.614 22 C 0.533 3.467 23 O -0.527 6.527 24 C 0.030 3.970 25 N -0.502 5.502 26 C 0.031 3.969 27 C -0.126 4.126 28 C -0.131 4.131 29 C 0.033 3.967 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.356 0.644 36 H 0.046 0.954 37 H 0.086 0.914 38 H 0.392 0.608 39 H 0.272 0.728 40 H 0.074 0.926 41 H 0.084 0.916 42 H 0.066 0.934 43 H 0.105 0.895 44 H 0.112 0.888 45 H 0.036 0.964 46 H 0.069 0.931 47 H 0.074 0.926 48 H 0.066 0.934 49 H 0.072 0.928 50 H 0.046 0.954 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.537 13.252 13.268 22.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.036 3.964 3 H 0.094 0.906 4 C -0.168 4.168 5 C -0.038 4.038 6 H 0.078 0.922 7 N -0.290 5.290 8 C -0.083 4.083 9 C 0.225 3.775 10 O -0.468 6.468 11 N -0.199 5.199 12 C -0.430 4.430 13 H 0.121 0.879 14 C -0.179 4.179 15 N -0.542 5.542 16 Si 0.758 3.242 17 H -0.199 1.199 18 H -0.210 1.210 19 H -0.199 1.199 20 C -0.018 4.018 21 N -0.350 5.350 22 C 0.321 3.679 23 O -0.404 6.404 24 C -0.101 4.101 25 N -0.227 5.227 26 C -0.096 4.096 27 C -0.164 4.164 28 C -0.169 4.169 29 C -0.095 4.095 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.110 0.890 34 H 0.101 0.899 35 H 0.177 0.823 36 H 0.064 0.936 37 H 0.104 0.896 38 H 0.226 0.774 39 H 0.082 0.918 40 H 0.093 0.907 41 H 0.102 0.898 42 H 0.084 0.916 43 H 0.123 0.877 44 H 0.130 0.870 45 H 0.055 0.945 46 H 0.088 0.912 47 H 0.093 0.907 48 H 0.085 0.915 49 H 0.090 0.910 50 H 0.064 0.936 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -13.276 13.484 13.535 23.265 hybrid contribution 1.022 -0.913 -0.752 1.563 sum -12.254 12.571 12.783 21.716 Atomic orbital electron populations 1.22130 0.94602 1.02412 1.02797 1.21493 0.94756 0.96158 0.83951 0.90642 1.22915 0.97957 0.99396 0.96516 1.22616 0.96906 0.90837 0.93396 0.92178 1.59978 1.24813 1.29981 1.14249 1.21746 0.89031 0.96565 1.00983 1.19762 0.83941 0.86969 0.86864 1.90531 1.43649 1.67681 1.44915 1.41855 1.11535 1.25273 1.41196 1.19651 0.98614 1.02441 1.22321 0.87946 1.25270 0.95264 0.99636 0.97732 1.69600 1.04274 1.41125 1.39232 0.85912 0.77255 0.81105 0.79922 1.19898 1.20964 1.19855 1.22410 0.95385 0.88645 0.95329 1.48555 1.52728 1.28816 1.04903 1.20073 0.80352 0.85380 0.82088 1.90617 1.39787 1.27339 1.82621 1.22224 1.02482 0.96365 0.89070 1.64700 1.15493 1.41966 1.00538 1.23519 0.87107 1.02856 0.96099 1.22519 0.98783 0.99754 0.95345 1.22393 0.96551 0.99529 0.98468 1.22945 0.99797 0.94928 0.91797 0.91331 0.92375 0.91684 0.89032 0.89938 0.82268 0.93611 0.89597 0.77449 0.91768 0.90724 0.89790 0.91615 0.87655 0.87049 0.94548 0.91245 0.90744 0.91549 0.90962 0.93570 0.90050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.57 9.10 37.16 0.34 -1.23 16 2 C 0.14 1.40 3.46 -66.95 -0.23 1.17 16 3 H 0.08 0.78 8.14 -51.92 -0.42 0.36 16 4 C -0.13 -1.21 5.95 -24.90 -0.15 -1.36 16 5 C 0.07 0.80 3.32 -65.57 -0.22 0.58 16 6 H 0.06 0.63 7.92 -51.93 -0.41 0.22 16 7 N -0.66 -9.31 6.00 -105.73 -0.63 -9.95 16 8 C 0.05 0.79 6.04 -4.98 -0.03 0.76 16 9 C 0.44 9.84 7.82 -10.99 -0.09 9.76 16 10 O -0.58 -15.19 15.78 5.54 0.09 -15.10 16 11 N -0.56 -13.74 5.29 -10.96 -0.06 -13.79 16 12 C -0.30 -8.18 9.68 -14.94 -0.14 -8.33 16 13 H 0.10 2.92 7.16 -52.48 -0.38 2.55 16 14 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 15 N -0.90 -23.99 13.05 55.50 0.72 -23.27 16 16 Si 0.93 20.65 29.55 -169.99 -5.02 15.62 16 17 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 18 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 19 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 20 C 0.11 1.10 6.34 -2.53 -0.02 1.09 16 21 N -0.61 -6.62 3.06 -163.02 -0.50 -7.12 16 22 C 0.53 6.34 7.35 -10.98 -0.08 6.25 16 23 O -0.53 -7.58 12.56 5.56 0.07 -7.51 16 24 C 0.03 0.30 4.52 -4.98 -0.02 0.27 16 25 N -0.50 -5.31 5.26 -231.89 -1.22 -6.53 16 26 C 0.03 0.33 5.30 -1.90 -0.01 0.32 16 27 C -0.13 -1.03 7.06 -24.87 -0.18 -1.21 16 28 C -0.13 -0.97 6.93 -25.37 -0.18 -1.14 16 29 C 0.03 0.28 6.70 -2.75 -0.02 0.26 16 30 H 0.07 0.78 6.89 -51.93 -0.36 0.42 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.09 0.90 7.85 -51.92 -0.41 0.49 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.36 5.24 8.23 -39.29 -0.32 4.92 16 36 H 0.05 0.66 8.09 -51.93 -0.42 0.24 16 37 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 38 H 0.39 9.14 7.90 -40.82 -0.32 8.82 16 39 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 40 H 0.07 0.70 7.48 -51.93 -0.39 0.31 16 41 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.07 0.60 7.81 -51.93 -0.41 0.19 16 43 H 0.11 0.94 7.85 -51.93 -0.41 0.53 16 44 H 0.11 1.39 5.97 -51.93 -0.31 1.08 16 45 H 0.04 0.38 8.02 -51.93 -0.42 -0.03 16 46 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 50 H 0.05 0.37 7.57 -51.93 -0.39 -0.03 16 51 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 403.53 15.07 6.08 6.08 Total: -1.00 -31.54 403.53 -10.31 -41.85 By element: Atomic # 1 Polarization: 20.74 SS G_CDS: -8.72 Total: 12.02 kcal Atomic # 6 Polarization: 8.81 SS G_CDS: -1.11 Total: 7.69 kcal Atomic # 7 Polarization: -58.97 SS G_CDS: -1.69 Total: -60.66 kcal Atomic # 8 Polarization: -22.77 SS G_CDS: 0.16 Total: -22.61 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -31.54 -10.31 -41.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486130753.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.709 kcal (2) G-P(sol) polarization free energy of solvation -31.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds