Wall clock time and date at job start Tue Mar 31 2020 21:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.87473 * 2 1 4 4 C 1.54328 * 109.88494 * 238.82703 * 2 1 3 5 5 C 1.55155 * 102.94193 * 218.39140 * 4 2 1 6 6 H 1.09003 * 110.99799 * 277.42087 * 5 4 2 7 7 N 1.46902 * 111.00530 * 153.57512 * 5 4 2 8 8 C 1.46899 * 111.00109 * 161.34780 * 7 5 4 9 9 C 1.50700 * 109.47022 * 180.02562 * 8 7 5 10 10 O 1.21297 * 120.00099 * 359.97438 * 9 8 7 11 11 N 1.34776 * 119.99933 * 180.02562 * 9 8 7 12 12 C 1.37093 * 120.00157 * 180.02562 * 11 9 8 13 13 H 1.08005 * 119.99943 * 359.97438 * 12 11 9 14 14 C 1.38951 * 120.00446 * 179.97438 * 12 11 9 15 15 N 1.31410 * 119.99609 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00209 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47211 * 59.99877 * 16 14 12 18 18 H 1.48500 * 109.47097 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47139 * 299.99826 * 16 14 12 20 20 C 1.54906 * 101.58328 * 35.49714 * 5 4 2 21 21 N 1.47019 * 109.88752 * 121.01638 * 2 1 3 22 22 C 1.34780 * 125.64491 * 298.32648 * 21 2 1 23 23 O 1.21277 * 120.00173 * 359.97438 * 22 21 2 24 24 C 1.50701 * 119.99720 * 179.97438 * 22 21 2 25 25 N 1.46899 * 109.46768 * 179.97438 * 24 22 21 26 26 C 1.48537 * 111.00184 * 52.60731 * 25 24 22 27 27 C 1.54935 * 103.22806 * 159.71664 * 26 25 24 28 28 C 1.54596 * 102.92441 * 322.58622 * 27 26 25 29 29 C 1.47908 * 110.99878 * 169.99965 * 25 24 22 30 30 H 1.09002 * 109.47153 * 300.43629 * 1 2 3 31 31 H 1.09001 * 109.46832 * 180.43820 * 1 2 3 32 32 H 1.09004 * 109.47261 * 60.43801 * 1 2 3 33 33 H 1.09007 * 110.71513 * 336.75055 * 4 2 1 34 34 H 1.09000 * 110.72424 * 100.02040 * 4 2 1 35 35 H 1.00900 * 111.00131 * 37.39058 * 7 5 4 36 36 H 1.09005 * 109.47023 * 299.99753 * 8 7 5 37 37 H 1.08994 * 109.47400 * 60.00096 * 8 7 5 38 38 H 0.96995 * 120.00339 * 359.97438 * 11 9 8 39 39 H 0.97001 * 120.00036 * 180.02562 * 15 14 12 40 40 H 1.09001 * 110.36496 * 204.15090 * 20 5 4 41 41 H 1.09002 * 110.36576 * 81.83622 * 20 5 4 42 42 H 1.09003 * 109.47247 * 300.00045 * 24 22 21 43 43 H 1.08997 * 109.47294 * 59.99833 * 24 22 21 44 44 H 1.08995 * 110.66167 * 278.15502 * 26 25 24 45 45 H 1.08993 * 110.66405 * 41.28230 * 26 25 24 46 46 H 1.08990 * 110.72487 * 204.22739 * 27 26 25 47 47 H 1.09001 * 110.87574 * 81.00945 * 27 26 25 48 48 H 1.09003 * 110.31040 * 263.04034 * 28 27 26 49 49 H 1.08994 * 110.39763 * 140.91405 * 28 27 26 50 50 H 1.09005 * 109.91513 * 333.51425 * 29 25 24 51 51 H 1.09002 * 109.91866 * 94.60335 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0252 0.0000 4 6 2.0549 -0.7512 -1.2417 5 6 3.2876 -1.5152 -0.6903 6 1 4.1654 -0.8697 -0.6593 7 7 3.5539 -2.7249 -1.4800 8 6 4.9267 -3.2020 -1.2656 9 6 5.1625 -4.4409 -2.0906 10 8 4.2742 -4.8832 -2.7882 11 7 6.3601 -5.0580 -2.0525 12 6 6.5748 -6.1847 -2.8033 13 1 5.7841 -6.5781 -3.4251 14 6 7.8096 -6.8207 -2.7645 15 7 8.7718 -6.3417 -2.0084 16 14 8.1019 -8.3563 -3.7871 17 1 7.9072 -8.0384 -5.2245 18 1 9.4898 -8.8383 -3.5708 19 1 7.1414 -9.4128 -3.3793 20 6 2.8145 -1.8783 0.7394 21 7 2.0301 -0.7124 1.1848 22 6 1.8086 -0.3578 2.4662 23 8 1.1459 0.6264 2.7171 24 6 2.3844 -1.1844 3.5870 25 7 2.0036 -0.5933 4.8768 26 6 0.5348 -0.3867 4.9548 27 6 0.2719 -0.2818 6.4781 28 6 1.2560 -1.3163 7.0708 29 6 2.3434 -1.4988 5.9958 30 1 -0.3633 0.5206 0.8861 31 1 -0.3633 -1.0277 0.0079 32 1 -0.3634 0.5070 -0.8939 33 1 1.3051 -1.4482 -1.6163 34 1 2.3529 -0.0488 -2.0201 35 1 3.3762 -2.5634 -2.4600 36 1 5.6318 -2.4266 -1.5654 37 1 5.0697 -3.4349 -0.2105 38 1 7.0703 -4.7045 -1.4944 39 1 9.6340 -6.7854 -1.9815 40 1 3.6717 -2.0318 1.3950 41 1 2.1887 -2.7705 0.7167 42 1 1.9972 -2.2014 3.5245 43 1 3.4710 -1.2035 3.5031 44 1 0.2489 0.5363 4.4505 45 1 0.0035 -1.2386 4.5305 46 1 -0.7580 -0.5517 6.7112 47 1 0.4989 0.7198 6.8433 48 1 0.7453 -2.2611 7.2566 49 1 1.6959 -0.9370 7.9931 50 1 2.3520 -2.5319 5.6479 51 1 3.3199 -1.2362 6.4027 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486130753.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:41:49 Heat of formation + Delta-G solvation = -77.243197 kcal Electronic energy + Delta-G solvation = -29571.654253 eV Core-core repulsion = 25504.946708 eV Total energy + Delta-G solvation = -4066.707545 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.51879 -40.22158 -39.71491 -38.41233 -36.23190 -35.57281 -33.75310 -33.24572 -32.47580 -31.13413 -29.74788 -28.07912 -27.52046 -26.81790 -25.74135 -23.17992 -22.14754 -21.81627 -21.62679 -21.05280 -20.00079 -19.78881 -18.20806 -17.91592 -17.66397 -16.92029 -16.73644 -16.64641 -16.36341 -16.16181 -15.88200 -15.48963 -15.21458 -14.93021 -14.72480 -14.65049 -14.40266 -14.06599 -13.87436 -13.74986 -13.50962 -13.43449 -13.28867 -13.14569 -13.11920 -12.91969 -12.77395 -12.53276 -12.41378 -12.22629 -12.12853 -12.07116 -11.95937 -11.89733 -11.68960 -11.48084 -11.46482 -10.62720 -10.32032 -9.99526 -9.73435 -9.43079 -9.38814 -8.44978 -5.93266 1.41000 1.43340 1.53625 1.56095 1.79997 2.08155 2.30326 2.84195 3.04499 3.22857 3.30862 3.48155 3.59595 3.73453 3.75361 3.94076 4.02556 4.07518 4.17086 4.24970 4.30111 4.32257 4.34171 4.35743 4.40600 4.52400 4.60135 4.63134 4.65834 4.69332 4.75131 4.80211 4.92535 4.93333 4.96875 4.98412 5.10966 5.13177 5.20588 5.27756 5.29723 5.39763 5.42864 5.85702 5.89705 5.92221 6.10503 6.35802 6.48473 6.62151 7.13902 7.14808 7.59126 8.14243 8.72007 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.013792 B = 0.002139 C = 0.001906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.735664 B =13089.111403 C =14689.393354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.137 3.863 3 H 0.074 0.926 4 C -0.120 4.120 5 C 0.077 3.923 6 H 0.073 0.927 7 N -0.667 5.667 8 C 0.065 3.935 9 C 0.438 3.562 10 O -0.623 6.623 11 N -0.574 5.574 12 C -0.333 4.333 13 H 0.079 0.921 14 C -0.013 4.013 15 N -0.920 5.920 16 Si 0.990 3.010 17 H -0.272 1.272 18 H -0.272 1.272 19 H -0.272 1.272 20 C 0.108 3.892 21 N -0.612 5.612 22 C 0.527 3.473 23 O -0.557 6.557 24 C 0.032 3.968 25 N -0.520 5.520 26 C 0.033 3.967 27 C -0.123 4.123 28 C -0.128 4.128 29 C 0.031 3.969 30 H 0.048 0.952 31 H 0.052 0.948 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.101 0.899 35 H 0.353 0.647 36 H 0.070 0.930 37 H 0.107 0.893 38 H 0.397 0.603 39 H 0.277 0.723 40 H 0.089 0.911 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.119 0.881 44 H 0.086 0.914 45 H 0.031 0.969 46 H 0.081 0.919 47 H 0.070 0.930 48 H 0.076 0.924 49 H 0.083 0.917 50 H 0.052 0.948 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.980 13.291 13.919 22.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.034 3.966 3 H 0.092 0.908 4 C -0.158 4.158 5 C -0.034 4.034 6 H 0.091 0.909 7 N -0.300 5.300 8 C -0.068 4.068 9 C 0.226 3.774 10 O -0.510 6.510 11 N -0.211 5.211 12 C -0.462 4.462 13 H 0.097 0.903 14 C -0.213 4.213 15 N -0.561 5.561 16 Si 0.814 3.186 17 H -0.197 1.197 18 H -0.197 1.197 19 H -0.198 1.198 20 C -0.016 4.016 21 N -0.347 5.347 22 C 0.317 3.683 23 O -0.436 6.436 24 C -0.099 4.099 25 N -0.245 5.245 26 C -0.094 4.094 27 C -0.161 4.161 28 C -0.166 4.166 29 C -0.097 4.097 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.100 0.900 33 H 0.105 0.895 34 H 0.119 0.881 35 H 0.173 0.827 36 H 0.088 0.912 37 H 0.125 0.875 38 H 0.231 0.769 39 H 0.087 0.913 40 H 0.108 0.892 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.136 0.864 44 H 0.104 0.896 45 H 0.049 0.951 46 H 0.099 0.901 47 H 0.089 0.911 48 H 0.094 0.906 49 H 0.101 0.899 50 H 0.070 0.930 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -12.708 13.535 14.201 23.374 hybrid contribution 0.780 -0.867 -0.960 1.511 sum -11.928 12.669 13.241 21.865 Atomic orbital electron populations 1.22055 0.94521 1.01984 1.02670 1.21574 0.94851 0.96193 0.84029 0.90773 1.22865 0.97094 0.99344 0.96467 1.22636 0.97919 0.89775 0.93043 0.90914 1.59939 1.23639 1.32004 1.14444 1.21607 0.90708 0.93839 1.00611 1.20890 0.82506 0.87951 0.86086 1.90503 1.44692 1.69189 1.46567 1.41930 1.12529 1.25166 1.41467 1.19611 0.98741 1.04267 1.23606 0.90306 1.26005 0.94665 1.02069 0.98532 1.69658 1.04536 1.42080 1.39797 0.85022 0.77536 0.77645 0.78360 1.19734 1.19653 1.19770 1.22402 0.95639 0.88026 0.95487 1.48596 1.52436 1.28796 1.04891 1.20466 0.79963 0.85193 0.82716 1.90617 1.41124 1.28738 1.83089 1.22252 1.03079 0.96246 0.88284 1.64682 1.15376 1.43104 1.01309 1.23381 0.87322 1.01320 0.97373 1.22509 0.99852 1.00032 0.93737 1.22405 0.96017 0.99698 0.98455 1.23022 1.00404 0.94842 0.91391 0.93298 0.92855 0.89968 0.89475 0.88101 0.82673 0.91243 0.87503 0.76935 0.91344 0.89245 0.90720 0.90707 0.86359 0.89594 0.95088 0.90061 0.91099 0.90552 0.89873 0.92956 0.89518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 9.10 71.98 0.66 -2.26 16 2 C 0.14 2.58 3.46 45.34 0.16 2.74 16 3 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 4 C -0.12 -1.99 5.95 31.78 0.19 -1.80 16 5 C 0.08 1.48 3.32 46.30 0.15 1.63 16 6 H 0.07 1.28 7.92 -2.39 -0.02 1.27 16 7 N -0.67 -17.68 6.00 -488.41 -2.93 -20.61 16 8 C 0.06 1.93 6.04 85.56 0.52 2.45 16 9 C 0.44 19.47 7.82 87.66 0.69 20.15 16 10 O -0.62 -32.74 15.78 -3.08 -0.05 -32.79 16 11 N -0.57 -28.08 5.29 -306.98 -1.62 -29.70 16 12 C -0.33 -18.33 9.68 84.04 0.81 -17.51 16 13 H 0.08 4.63 7.16 -2.91 -0.02 4.61 16 14 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 15 N -0.92 -48.42 13.05 21.66 0.28 -48.14 16 16 Si 0.99 41.98 29.55 68.60 2.03 44.01 16 17 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 18 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 19 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 20 C 0.11 2.03 6.34 86.86 0.55 2.58 16 21 N -0.61 -12.50 3.06 -788.06 -2.42 -14.91 16 22 C 0.53 12.28 7.35 87.66 0.64 12.93 16 23 O -0.56 -16.27 12.56 -3.02 -0.04 -16.31 16 24 C 0.03 0.61 4.52 85.56 0.39 1.00 16 25 N -0.52 -10.59 5.26 -887.55 -4.67 -15.26 16 26 C 0.03 0.70 5.30 86.65 0.46 1.16 16 27 C -0.12 -1.92 7.06 31.80 0.22 -1.70 16 28 C -0.13 -1.66 6.93 31.47 0.22 -1.44 16 29 C 0.03 0.47 6.70 86.45 0.58 1.05 16 30 H 0.05 1.13 6.89 -2.39 -0.02 1.11 16 31 H 0.05 1.04 8.14 -2.39 -0.02 1.03 16 32 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 33 H 0.09 1.57 7.85 -2.38 -0.02 1.55 16 34 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.35 9.89 8.23 -89.69 -0.74 9.15 16 36 H 0.07 1.79 8.09 -2.38 -0.02 1.77 16 37 H 0.11 2.79 8.14 -2.39 -0.02 2.77 16 38 H 0.40 18.36 7.90 -92.71 -0.73 17.63 16 39 H 0.28 13.73 8.31 -92.71 -0.77 12.96 16 40 H 0.09 1.43 7.48 -2.39 -0.02 1.41 16 41 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.08 1.26 7.81 -2.39 -0.02 1.24 16 43 H 0.12 1.89 7.85 -2.39 -0.02 1.87 16 44 H 0.09 2.24 5.97 -2.39 -0.01 2.23 16 45 H 0.03 0.66 8.02 -2.39 -0.02 0.64 16 46 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 47 H 0.07 1.14 8.14 -2.39 -0.02 1.13 16 48 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 49 H 0.08 0.90 8.14 -2.39 -0.02 0.89 16 50 H 0.05 0.73 7.57 -2.38 -0.02 0.71 16 51 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -68.75 403.53 -3.25 -72.00 By element: Atomic # 1 Polarization: 41.49 SS G_CDS: -0.53 Total: 40.96 kcal Atomic # 6 Polarization: 14.06 SS G_CDS: 6.70 Total: 20.76 kcal Atomic # 7 Polarization: -117.27 SS G_CDS: -11.35 Total: -128.62 kcal Atomic # 8 Polarization: -49.02 SS G_CDS: -0.09 Total: -49.10 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Total: -68.75 -3.25 -72.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486130753.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.242 kcal (2) G-P(sol) polarization free energy of solvation -68.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds