Wall clock time and date at job start Tue Mar 31 2020 21:41:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.09000 * 109.87466 * 2 1
4 4 C 1.54364 * 109.90369 * 121.14088 * 2 1 3
5 5 C 1.55154 * 102.92072 * 141.57455 * 4 2 1
6 6 H 1.08999 * 111.00910 * 82.64193 * 5 4 2
7 7 N 1.46901 * 111.00418 * 206.45633 * 5 4 2
8 8 C 1.46902 * 110.99844 * 201.81864 * 7 5 4
9 9 C 1.50702 * 109.47027 * 179.97438 * 8 7 5
10 10 O 1.21293 * 120.00255 * 0.02562 * 9 8 7
11 11 N 1.34777 * 119.99928 * 179.72353 * 9 8 7
12 12 C 1.37101 * 120.00327 * 180.27606 * 11 9 8
13 13 H 1.08001 * 119.99426 * 0.02562 * 12 11 9
14 14 C 1.38942 * 120.00412 * 180.02562 * 12 11 9
15 15 N 1.31414 * 120.00005 * 0.02562 * 14 12 11
16 16 Si 1.86803 * 120.00057 * 179.97438 * 14 12 11
17 17 H 1.48498 * 109.46867 * 90.00263 * 16 14 12
18 18 H 1.48501 * 109.47216 * 210.00120 * 16 14 12
19 19 H 1.48499 * 109.47135 * 330.00462 * 16 14 12
20 20 C 1.54914 * 101.62075 * 324.54749 * 5 4 2
21 21 N 1.47018 * 109.87882 * 238.98424 * 2 1 3
22 22 C 1.34783 * 125.65101 * 61.60935 * 21 2 1
23 23 O 1.21277 * 119.99962 * 0.02562 * 22 21 2
24 24 C 1.50705 * 119.99855 * 180.02562 * 22 21 2
25 25 N 1.46900 * 109.46630 * 179.97438 * 24 22 21
26 26 C 1.48533 * 111.00307 * 52.60251 * 25 24 22
27 27 C 1.54933 * 103.22616 * 159.71762 * 26 25 24
28 28 C 1.54592 * 102.92365 * 322.58323 * 27 26 25
29 29 C 1.47906 * 110.99511 * 169.99948 * 25 24 22
30 30 H 1.08997 * 109.47152 * 179.56331 * 1 2 3
31 31 H 1.09011 * 109.46934 * 299.56584 * 1 2 3
32 32 H 1.08997 * 109.47249 * 59.56144 * 1 2 3
33 33 H 1.08998 * 110.70397 * 23.23142 * 4 2 1
34 34 H 1.08999 * 110.76178 * 259.94180 * 4 2 1
35 35 H 1.00902 * 111.00235 * 77.87101 * 7 5 4
36 36 H 1.09004 * 109.47131 * 60.00016 * 8 7 5
37 37 H 1.09000 * 109.47732 * 300.00127 * 8 7 5
38 38 H 0.97000 * 120.00317 * 0.28382 * 11 9 8
39 39 H 0.96996 * 120.00330 * 179.97438 * 15 14 12
40 40 H 1.08990 * 110.37326 * 155.82661 * 20 5 4
41 41 H 1.09001 * 110.36505 * 278.15797 * 20 5 4
42 42 H 1.08999 * 109.46862 * 299.99370 * 24 22 21
43 43 H 1.08998 * 109.47252 * 59.99527 * 24 22 21
44 44 H 1.08999 * 110.66413 * 278.15722 * 26 25 24
45 45 H 1.09004 * 110.66637 * 41.28539 * 26 25 24
46 46 H 1.09008 * 110.72318 * 204.22774 * 27 26 25
47 47 H 1.08999 * 110.72481 * 80.94940 * 27 26 25
48 48 H 1.09000 * 110.31018 * 263.03883 * 28 27 26
49 49 H 1.09005 * 110.30640 * 140.87625 * 28 27 26
50 50 H 1.08993 * 109.91874 * 333.50302 * 29 25 24
51 51 H 1.08995 * 109.91806 * 94.80450 * 29 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9006 1.0251 0.0000
4 6 2.0555 -0.7506 1.2423
5 6 3.2876 -1.5151 0.6902
6 1 4.1658 -0.8703 0.6590
7 7 3.5538 -2.7249 1.4800
8 6 4.9483 -3.1595 1.3232
9 6 5.1835 -4.3997 2.1464
10 8 4.2784 -4.8750 2.7992
11 7 6.3979 -4.9842 2.1526
12 6 6.6104 -6.1157 2.8971
13 1 5.8044 -6.5389 3.4783
14 6 7.8625 -6.7180 2.9039
15 7 8.8433 -6.2027 2.1971
16 14 8.1521 -8.2592 3.9188
17 1 7.8546 -9.4579 3.0943
18 1 9.5691 -8.3018 4.3610
19 1 7.2627 -8.2433 5.1079
20 6 2.8145 -1.8784 -0.7395
21 7 2.0299 -0.7124 -1.1849
22 6 1.8073 -0.3586 -2.4663
23 8 1.1436 0.6250 -2.7172
24 6 2.3831 -1.1852 -3.5871
25 7 2.0000 -0.5956 -4.8769
26 6 2.3537 0.8460 -4.9294
27 6 2.3829 1.1489 -6.4485
28 6 2.9905 -0.1407 -7.0465
29 6 2.7367 -1.2323 -5.9903
30 1 -0.3633 -1.0276 -0.0078
31 1 -0.3633 0.5071 0.8939
32 1 -0.3633 0.5206 -0.8860
33 1 1.3058 -1.4471 1.6174
34 1 2.3544 -0.0482 2.0203
35 1 2.9144 -3.4655 1.2337
36 1 5.6161 -2.3672 1.6615
37 1 5.1453 -3.3771 0.2734
38 1 7.1217 -4.6043 1.6304
39 1 9.7175 -6.6229 2.2021
40 1 3.6715 -2.0319 -1.3952
41 1 2.1885 -2.7705 -0.7167
42 1 3.4698 -1.2033 -3.5040
43 1 1.9969 -2.2025 -3.5239
44 1 1.5927 1.4471 -4.4317
45 1 3.3335 1.0182 -4.4839
46 1 3.0195 2.0085 -6.6583
47 1 1.3745 1.3125 -6.8287
48 1 4.0607 -0.0141 -7.2102
49 1 2.4917 -0.3957 -7.9816
50 1 3.6861 -1.6276 -5.6294
51 1 2.1374 -2.0341 -6.4216
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001486130755.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:41:56
Heat of formation + Delta-G solvation = -53.796720 kcal
Electronic energy + Delta-G solvation = -29574.644587 eV
Core-core repulsion = 25508.953758 eV
Total energy + Delta-G solvation = -4065.690830 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.211 amu
Computer time = 2.16 seconds
Orbital eigenvalues (eV)
-40.70236 -39.19569 -38.31210 -37.49031 -34.88859 -33.85405 -33.00031 -31.72200
-31.30210 -30.07208 -29.09007 -26.98059 -26.37545 -25.87343 -24.07073 -22.39372
-21.46454 -21.17401 -20.88521 -19.36654 -19.12700 -17.98220 -17.42463 -16.81912
-16.40481 -16.04074 -15.93305 -15.50642 -14.99434 -14.76301 -14.58444 -14.28963
-14.18720 -13.79974 -13.72006 -13.61292 -13.34630 -13.07236 -12.87335 -12.61918
-12.52086 -12.48516 -12.27459 -12.18001 -11.84433 -11.77508 -11.61045 -11.56577
-11.47439 -11.22776 -11.09064 -11.06354 -10.88941 -10.83169 -10.43256 -10.26734
-9.76869 -9.56383 -8.90763 -8.72711 -8.55356 -8.19156 -8.02143 -6.47051
-3.88074 2.40972 2.59631 3.14120 3.23457 3.29242 3.69041 3.83364
3.91435 4.13546 4.25181 4.36025 4.40787 4.48046 4.64054 4.65458
4.80765 4.89327 4.92711 4.99981 5.03348 5.05398 5.09809 5.18114
5.21581 5.24698 5.34339 5.36741 5.46279 5.50913 5.51718 5.54906
5.67407 5.72520 5.76599 5.83645 5.87716 5.88110 5.93473 5.99317
6.11484 6.19874 6.22332 6.56507 6.59277 7.05590 7.28574 7.48442
7.50387 7.98528 8.00390 8.54843 9.12373 9.47926 9.98833 10.70549
Molecular weight = 338.21amu
Principal moments of inertia in cm(-1)
A = 0.013349 B = 0.002160 C = 0.001909
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2097.076741 B =12958.897074 C =14660.071201
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.161 4.161
2 C 0.135 3.865
3 H 0.075 0.925
4 C -0.116 4.116
5 C 0.079 3.921
6 H 0.094 0.906
7 N -0.652 5.652
8 C 0.049 3.951
9 C 0.439 3.561
10 O -0.583 6.583
11 N -0.562 5.562
12 C -0.300 4.300
13 H 0.103 0.897
14 C 0.023 3.977
15 N -0.901 5.901
16 Si 0.930 3.070
17 H -0.278 1.278
18 H -0.283 1.283
19 H -0.269 1.269
20 C 0.065 3.935
21 N -0.612 5.612
22 C 0.531 3.469
23 O -0.525 6.525
24 C 0.030 3.970
25 N -0.502 5.502
26 C 0.031 3.969
27 C -0.126 4.126
28 C -0.132 4.132
29 C 0.033 3.967
30 H 0.056 0.944
31 H 0.065 0.935
32 H 0.068 0.932
33 H 0.085 0.915
34 H 0.087 0.913
35 H 0.353 0.647
36 H 0.088 0.912
37 H 0.045 0.955
38 H 0.392 0.608
39 H 0.272 0.728
40 H 0.075 0.925
41 H 0.074 0.926
42 H 0.064 0.936
43 H 0.105 0.895
44 H 0.112 0.888
45 H 0.036 0.964
46 H 0.070 0.930
47 H 0.074 0.926
48 H 0.066 0.934
49 H 0.072 0.928
50 H 0.046 0.954
51 H 0.081 0.919
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.142 14.055 -14.912 22.865
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.219 4.219
2 C 0.032 3.968
3 H 0.093 0.907
4 C -0.155 4.155
5 C -0.033 4.033
6 H 0.112 0.888
7 N -0.283 5.283
8 C -0.084 4.084
9 C 0.224 3.776
10 O -0.467 6.467
11 N -0.199 5.199
12 C -0.429 4.429
13 H 0.121 0.879
14 C -0.179 4.179
15 N -0.543 5.543
16 Si 0.757 3.243
17 H -0.204 1.204
18 H -0.209 1.209
19 H -0.194 1.194
20 C -0.060 4.060
21 N -0.347 5.347
22 C 0.320 3.680
23 O -0.401 6.401
24 C -0.101 4.101
25 N -0.227 5.227
26 C -0.096 4.096
27 C -0.164 4.164
28 C -0.170 4.170
29 C -0.095 4.095
30 H 0.075 0.925
31 H 0.084 0.916
32 H 0.087 0.913
33 H 0.104 0.896
34 H 0.105 0.895
35 H 0.174 0.826
36 H 0.106 0.894
37 H 0.063 0.937
38 H 0.225 0.775
39 H 0.082 0.918
40 H 0.093 0.907
41 H 0.092 0.908
42 H 0.082 0.918
43 H 0.123 0.877
44 H 0.130 0.870
45 H 0.054 0.946
46 H 0.088 0.912
47 H 0.093 0.907
48 H 0.085 0.915
49 H 0.091 0.909
50 H 0.064 0.936
51 H 0.099 0.901
Dipole moment (debyes) X Y Z Total
from point charges -11.348 14.455 -14.155 23.196
hybrid contribution 1.774 -1.053 -0.635 2.158
sum -9.575 13.401 -14.790 22.136
Atomic orbital electron populations
1.22125 0.94581 1.02386 1.02834 1.21627 0.94802 0.96302 0.84039
0.90651 1.22762 0.97481 0.99371 0.95885 1.22801 0.98354 0.93590
0.88587 0.88786 1.60128 1.04221 1.07263 1.56698 1.21752 0.90474
0.97952 0.98217 1.19763 0.84189 0.86705 0.86903 1.90534 1.43245
1.66105 1.46832 1.41865 1.09956 1.25186 1.42882 1.19703 0.97151
1.02138 1.23942 0.87875 1.25270 0.95167 0.99661 0.97823 1.69607
1.02751 1.40998 1.40911 0.85853 0.77530 0.81008 0.79888 1.20397
1.20900 1.19364 1.23298 0.95353 0.89160 0.98210 1.48511 1.52689
1.28543 1.04980 1.20099 0.80555 0.85255 0.82128 1.90622 1.39444
1.27458 1.82601 1.22223 0.99192 0.99553 0.89153 1.64697 1.53558
1.03656 1.00764 1.23530 1.00402 0.89481 0.96202 1.22527 1.01496
0.97055 0.95331 1.22402 1.00917 0.95061 0.98589 1.22946 0.96781
0.97733 0.91999 0.92471 0.91613 0.91324 0.89612 0.89487 0.82604
0.89402 0.93720 0.77464 0.91827 0.90653 0.90808 0.91792 0.87738
0.87012 0.94564 0.91178 0.90715 0.91512 0.90936 0.93592 0.90055
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.59 9.11 37.16 0.34 -1.25 16
2 C 0.14 1.35 3.46 -66.93 -0.23 1.12 16
3 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16
4 C -0.12 -1.13 6.18 -24.88 -0.15 -1.28 16
5 C 0.08 0.83 3.34 -65.56 -0.22 0.61 16
6 H 0.09 0.96 7.87 -51.93 -0.41 0.55 16
7 N -0.65 -9.19 6.02 -105.72 -0.64 -9.82 16
8 C 0.05 0.77 6.05 -4.97 -0.03 0.74 16
9 C 0.44 9.80 7.82 -10.98 -0.09 9.72 16
10 O -0.58 -15.18 15.78 5.55 0.09 -15.09 16
11 N -0.56 -13.69 5.29 -10.96 -0.06 -13.75 16
12 C -0.30 -8.14 9.68 -14.93 -0.14 -8.29 16
13 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16
14 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16
15 N -0.90 -23.95 13.05 55.50 0.72 -23.23 16
16 Si 0.93 20.62 29.55 -169.99 -5.02 15.59 16
17 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16
18 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16
19 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16
20 C 0.07 0.62 6.30 -2.52 -0.02 0.60 16
21 N -0.61 -6.33 3.07 -162.99 -0.50 -6.83 16
22 C 0.53 6.16 7.35 -10.98 -0.08 6.08 16
23 O -0.53 -7.44 12.56 5.56 0.07 -7.37 16
24 C 0.03 0.29 4.52 -4.97 -0.02 0.27 16
25 N -0.50 -5.18 5.26 -231.89 -1.22 -6.40 16
26 C 0.03 0.32 5.30 -1.90 -0.01 0.31 16
27 C -0.13 -1.01 7.06 -24.87 -0.18 -1.19 16
28 C -0.13 -0.94 6.93 -25.37 -0.18 -1.12 16
29 C 0.03 0.27 6.70 -2.75 -0.02 0.25 16
30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16
31 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16
32 H 0.07 0.80 6.88 -51.93 -0.36 0.45 16
33 H 0.09 0.87 7.85 -51.93 -0.41 0.47 16
34 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16
35 H 0.35 5.15 7.94 -39.29 -0.31 4.84 16
36 H 0.09 1.29 8.09 -51.93 -0.42 0.87 16
37 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16
38 H 0.39 9.09 7.90 -40.82 -0.32 8.77 16
39 H 0.27 6.84 8.31 -40.82 -0.34 6.51 16
40 H 0.08 0.64 7.48 -51.93 -0.39 0.25 16
41 H 0.07 0.69 7.77 -51.93 -0.40 0.29 16
42 H 0.06 0.55 7.52 -51.93 -0.39 0.16 16
43 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16
44 H 0.11 1.38 5.97 -51.93 -0.31 1.07 16
45 H 0.04 0.37 8.02 -51.93 -0.42 -0.04 16
46 H 0.07 0.48 8.14 -51.92 -0.42 0.06 16
47 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16
48 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16
49 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16
50 H 0.05 0.35 7.57 -51.93 -0.39 -0.04 16
51 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16
LS Contribution 403.06 15.07 6.07 6.07
Total: -1.00 -31.64 403.06 -10.29 -41.94
By element:
Atomic # 1 Polarization: 20.54 SS G_CDS: -8.69 Total: 11.84 kcal
Atomic # 6 Polarization: 8.17 SS G_CDS: -1.12 Total: 7.05 kcal
Atomic # 7 Polarization: -58.35 SS G_CDS: -1.69 Total: -60.04 kcal
Atomic # 8 Polarization: -22.62 SS G_CDS: 0.16 Total: -22.46 kcal
Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.59 kcal
Total LS contribution 6.07 Total: 6.07 kcal
Total: -31.64 -10.29 -41.94 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001486130755.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -11.858 kcal
(2) G-P(sol) polarization free energy of solvation -31.645 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.503 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.294 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.939 kcal
(6) G-S(sol) free energy of system = (1) + (5) -53.797 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 2.16 seconds