Wall clock time and date at job start Tue Mar 31 2020 21:41:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.09000 * 109.87466 * 2 1
4 4 C 1.54364 * 109.90369 * 121.14088 * 2 1 3
5 5 C 1.55154 * 102.92072 * 141.57455 * 4 2 1
6 6 H 1.08999 * 111.00910 * 82.64193 * 5 4 2
7 7 N 1.46901 * 111.00418 * 206.45633 * 5 4 2
8 8 C 1.46902 * 110.99844 * 201.81864 * 7 5 4
9 9 C 1.50702 * 109.47027 * 179.97438 * 8 7 5
10 10 O 1.21293 * 120.00255 * 0.02562 * 9 8 7
11 11 N 1.34777 * 119.99928 * 179.72353 * 9 8 7
12 12 C 1.37101 * 120.00327 * 180.27606 * 11 9 8
13 13 H 1.08001 * 119.99426 * 0.02562 * 12 11 9
14 14 C 1.38942 * 120.00412 * 180.02562 * 12 11 9
15 15 N 1.31414 * 120.00005 * 0.02562 * 14 12 11
16 16 Si 1.86803 * 120.00057 * 179.97438 * 14 12 11
17 17 H 1.48498 * 109.46867 * 90.00263 * 16 14 12
18 18 H 1.48501 * 109.47216 * 210.00120 * 16 14 12
19 19 H 1.48499 * 109.47135 * 330.00462 * 16 14 12
20 20 C 1.54914 * 101.62075 * 324.54749 * 5 4 2
21 21 N 1.47018 * 109.87882 * 238.98424 * 2 1 3
22 22 C 1.34783 * 125.65101 * 61.60935 * 21 2 1
23 23 O 1.21277 * 119.99962 * 0.02562 * 22 21 2
24 24 C 1.50705 * 119.99855 * 180.02562 * 22 21 2
25 25 N 1.46900 * 109.46630 * 179.97438 * 24 22 21
26 26 C 1.48533 * 111.00307 * 52.60251 * 25 24 22
27 27 C 1.54933 * 103.22616 * 159.71762 * 26 25 24
28 28 C 1.54592 * 102.92365 * 322.58323 * 27 26 25
29 29 C 1.47906 * 110.99511 * 169.99948 * 25 24 22
30 30 H 1.08997 * 109.47152 * 179.56331 * 1 2 3
31 31 H 1.09011 * 109.46934 * 299.56584 * 1 2 3
32 32 H 1.08997 * 109.47249 * 59.56144 * 1 2 3
33 33 H 1.08998 * 110.70397 * 23.23142 * 4 2 1
34 34 H 1.08999 * 110.76178 * 259.94180 * 4 2 1
35 35 H 1.00902 * 111.00235 * 77.87101 * 7 5 4
36 36 H 1.09004 * 109.47131 * 60.00016 * 8 7 5
37 37 H 1.09000 * 109.47732 * 300.00127 * 8 7 5
38 38 H 0.97000 * 120.00317 * 0.28382 * 11 9 8
39 39 H 0.96996 * 120.00330 * 179.97438 * 15 14 12
40 40 H 1.08990 * 110.37326 * 155.82661 * 20 5 4
41 41 H 1.09001 * 110.36505 * 278.15797 * 20 5 4
42 42 H 1.08999 * 109.46862 * 299.99370 * 24 22 21
43 43 H 1.08998 * 109.47252 * 59.99527 * 24 22 21
44 44 H 1.08999 * 110.66413 * 278.15722 * 26 25 24
45 45 H 1.09004 * 110.66637 * 41.28539 * 26 25 24
46 46 H 1.09008 * 110.72318 * 204.22774 * 27 26 25
47 47 H 1.08999 * 110.72481 * 80.94940 * 27 26 25
48 48 H 1.09000 * 110.31018 * 263.03883 * 28 27 26
49 49 H 1.09005 * 110.30640 * 140.87625 * 28 27 26
50 50 H 1.08993 * 109.91874 * 333.50302 * 29 25 24
51 51 H 1.08995 * 109.91806 * 94.80450 * 29 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9006 1.0251 0.0000
4 6 2.0555 -0.7506 1.2423
5 6 3.2876 -1.5151 0.6902
6 1 4.1658 -0.8703 0.6590
7 7 3.5538 -2.7249 1.4800
8 6 4.9483 -3.1595 1.3232
9 6 5.1835 -4.3997 2.1464
10 8 4.2784 -4.8750 2.7992
11 7 6.3979 -4.9842 2.1526
12 6 6.6104 -6.1157 2.8971
13 1 5.8044 -6.5389 3.4783
14 6 7.8625 -6.7180 2.9039
15 7 8.8433 -6.2027 2.1971
16 14 8.1521 -8.2592 3.9188
17 1 7.8546 -9.4579 3.0943
18 1 9.5691 -8.3018 4.3610
19 1 7.2627 -8.2433 5.1079
20 6 2.8145 -1.8784 -0.7395
21 7 2.0299 -0.7124 -1.1849
22 6 1.8073 -0.3586 -2.4663
23 8 1.1436 0.6250 -2.7172
24 6 2.3831 -1.1852 -3.5871
25 7 2.0000 -0.5956 -4.8769
26 6 2.3537 0.8460 -4.9294
27 6 2.3829 1.1489 -6.4485
28 6 2.9905 -0.1407 -7.0465
29 6 2.7367 -1.2323 -5.9903
30 1 -0.3633 -1.0276 -0.0078
31 1 -0.3633 0.5071 0.8939
32 1 -0.3633 0.5206 -0.8860
33 1 1.3058 -1.4471 1.6174
34 1 2.3544 -0.0482 2.0203
35 1 2.9144 -3.4655 1.2337
36 1 5.6161 -2.3672 1.6615
37 1 5.1453 -3.3771 0.2734
38 1 7.1217 -4.6043 1.6304
39 1 9.7175 -6.6229 2.2021
40 1 3.6715 -2.0319 -1.3952
41 1 2.1885 -2.7705 -0.7167
42 1 3.4698 -1.2033 -3.5040
43 1 1.9969 -2.2025 -3.5239
44 1 1.5927 1.4471 -4.4317
45 1 3.3335 1.0182 -4.4839
46 1 3.0195 2.0085 -6.6583
47 1 1.3745 1.3125 -6.8287
48 1 4.0607 -0.0141 -7.2102
49 1 2.4917 -0.3957 -7.9816
50 1 3.6861 -1.6276 -5.6294
51 1 2.1374 -2.0341 -6.4216
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001486130755.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:41:53
Heat of formation + Delta-G solvation = -77.598325 kcal
Electronic energy + Delta-G solvation = -29575.676703 eV
Core-core repulsion = 25508.953758 eV
Total energy + Delta-G solvation = -4066.722945 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.211 amu
Computer time = 3.17 seconds
Orbital eigenvalues (eV)
-41.54917 -40.24201 -39.72904 -38.44240 -36.22905 -35.57617 -33.76502 -33.24796
-32.47388 -31.12621 -29.75754 -28.02401 -27.56250 -26.75811 -25.68703 -23.23104
-22.26475 -21.86413 -21.65405 -21.05812 -19.97741 -19.89687 -18.28975 -17.77383
-17.65021 -17.03329 -16.78327 -16.64583 -16.34231 -16.01960 -15.85936 -15.52040
-15.23814 -14.99879 -14.85134 -14.39113 -14.19531 -14.12704 -14.02214 -13.64004
-13.49124 -13.38038 -13.36532 -13.15639 -13.12407 -12.93172 -12.80143 -12.54393
-12.40353 -12.35982 -12.23096 -12.12263 -11.96630 -11.87249 -11.67456 -11.48878
-11.47560 -10.65285 -10.32278 -9.99509 -9.75653 -9.46821 -9.30956 -8.45419
-5.93549 1.38960 1.43371 1.54169 1.55435 1.78510 2.08043 2.30133
2.84238 3.02296 3.22471 3.33662 3.45089 3.68813 3.72667 3.75825
3.92997 3.98219 4.05929 4.12503 4.20873 4.23537 4.31010 4.33521
4.35497 4.40540 4.47810 4.59462 4.62507 4.63724 4.67546 4.72347
4.77184 4.91960 4.95072 4.97565 5.05069 5.10945 5.13448 5.20964
5.27814 5.30647 5.40591 5.43024 5.84565 5.89787 5.91023 6.10424
6.35423 6.46621 6.61980 7.12390 7.14827 7.58998 8.14207 8.71815
Molecular weight = 338.21amu
Principal moments of inertia in cm(-1)
A = 0.013349 B = 0.002160 C = 0.001909
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2097.076741 B =12958.897074 C =14660.071201
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.154 4.154
2 C 0.136 3.864
3 H 0.073 0.927
4 C -0.109 4.109
5 C 0.082 3.918
6 H 0.104 0.896
7 N -0.664 5.664
8 C 0.064 3.936
9 C 0.437 3.563
10 O -0.624 6.624
11 N -0.574 5.574
12 C -0.331 4.331
13 H 0.079 0.921
14 C -0.013 4.013
15 N -0.920 5.920
16 Si 0.990 3.010
17 H -0.271 1.271
18 H -0.272 1.272
19 H -0.274 1.274
20 C 0.069 3.931
21 N -0.610 5.610
22 C 0.526 3.474
23 O -0.557 6.557
24 C 0.033 3.967
25 N -0.521 5.521
26 C 0.033 3.967
27 C -0.124 4.124
28 C -0.128 4.128
29 C 0.031 3.969
30 H 0.053 0.947
31 H 0.080 0.920
32 H 0.047 0.953
33 H 0.081 0.919
34 H 0.095 0.905
35 H 0.349 0.651
36 H 0.106 0.894
37 H 0.074 0.926
38 H 0.397 0.603
39 H 0.277 0.723
40 H 0.091 0.909
41 H 0.076 0.924
42 H 0.079 0.921
43 H 0.115 0.885
44 H 0.085 0.915
45 H 0.033 0.967
46 H 0.082 0.918
47 H 0.069 0.931
48 H 0.077 0.923
49 H 0.082 0.918
50 H 0.054 0.946
51 H 0.085 0.915
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.268 14.048 -15.782 23.072
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.213 4.213
2 C 0.032 3.968
3 H 0.092 0.908
4 C -0.147 4.147
5 C -0.029 4.029
6 H 0.122 0.878
7 N -0.295 5.295
8 C -0.068 4.068
9 C 0.225 3.775
10 O -0.510 6.510
11 N -0.211 5.211
12 C -0.461 4.461
13 H 0.097 0.903
14 C -0.213 4.213
15 N -0.561 5.561
16 Si 0.814 3.186
17 H -0.196 1.196
18 H -0.197 1.197
19 H -0.199 1.199
20 C -0.056 4.056
21 N -0.345 5.345
22 C 0.315 3.685
23 O -0.435 6.435
24 C -0.098 4.098
25 N -0.246 5.246
26 C -0.094 4.094
27 C -0.162 4.162
28 C -0.166 4.166
29 C -0.096 4.096
30 H 0.072 0.928
31 H 0.099 0.901
32 H 0.066 0.934
33 H 0.099 0.901
34 H 0.114 0.886
35 H 0.169 0.831
36 H 0.124 0.876
37 H 0.092 0.908
38 H 0.231 0.769
39 H 0.086 0.914
40 H 0.110 0.890
41 H 0.094 0.906
42 H 0.097 0.903
43 H 0.133 0.867
44 H 0.103 0.897
45 H 0.051 0.949
46 H 0.100 0.900
47 H 0.088 0.912
48 H 0.096 0.904
49 H 0.100 0.900
50 H 0.072 0.928
51 H 0.103 0.897
Dipole moment (debyes) X Y Z Total
from point charges -10.460 14.459 -15.038 23.337
hybrid contribution 1.419 -0.999 -0.350 1.770
sum -9.041 13.461 -15.389 22.355
Atomic orbital electron populations
1.22052 0.94643 1.02033 1.02524 1.21643 0.94742 0.96289 0.84091
0.90848 1.22699 0.96972 0.99237 0.95811 1.22799 0.99073 0.92169
0.88821 0.87770 1.60100 1.03135 1.08085 1.58209 1.21613 0.91955
0.94913 0.98338 1.20918 0.82766 0.87715 0.86089 1.90507 1.44322
1.67685 1.48488 1.41935 1.10965 1.25029 1.43175 1.19643 0.97183
1.03945 1.25338 0.90341 1.25994 0.94576 1.02119 0.98564 1.69661
1.03040 1.41972 1.41437 0.84967 0.77632 0.77737 0.78267 1.19638
1.19718 1.19864 1.23287 0.95827 0.88714 0.97732 1.48547 1.52414
1.28669 1.04832 1.20510 0.80179 0.85037 0.82769 1.90623 1.40912
1.28883 1.83098 1.22245 0.99879 0.99420 0.88246 1.64668 1.54597
1.03775 1.01590 1.23389 0.99186 0.89432 0.97395 1.22517 1.01672
0.98161 0.93818 1.22412 1.01621 0.93988 0.98576 1.23017 0.96990
0.98032 0.91577 0.92751 0.90134 0.93413 0.90070 0.88635 0.83055
0.87571 0.90806 0.76918 0.91357 0.89027 0.90578 0.90348 0.86719
0.89659 0.94857 0.89987 0.91214 0.90449 0.89964 0.92793 0.89663
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.98 9.11 71.98 0.66 -2.32 16
2 C 0.14 2.54 3.46 45.36 0.16 2.70 16
3 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16
4 C -0.11 -1.91 6.18 31.80 0.20 -1.72 16
5 C 0.08 1.54 3.34 46.31 0.15 1.69 16
6 H 0.10 1.79 7.87 -2.39 -0.02 1.77 16
7 N -0.66 -17.44 6.02 -488.39 -2.94 -20.38 16
8 C 0.06 1.88 6.05 85.56 0.52 2.39 16
9 C 0.44 19.34 7.82 87.66 0.69 20.03 16
10 O -0.62 -32.77 15.78 -3.07 -0.05 -32.82 16
11 N -0.57 -27.94 5.29 -306.98 -1.62 -29.56 16
12 C -0.33 -18.23 9.68 84.04 0.81 -17.41 16
13 H 0.08 4.62 7.16 -2.91 -0.02 4.60 16
14 C -0.01 -0.66 5.50 84.92 0.47 -0.20 16
15 N -0.92 -48.27 13.05 21.66 0.28 -47.99 16
16 Si 0.99 41.94 29.55 68.60 2.03 43.96 16
17 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16
18 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16
19 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16
20 C 0.07 1.14 6.30 86.86 0.55 1.69 16
21 N -0.61 -11.80 3.07 -787.96 -2.42 -14.22 16
22 C 0.53 11.81 7.35 87.66 0.64 12.46 16
23 O -0.56 -16.02 12.56 -3.02 -0.04 -16.05 16
24 C 0.03 0.59 4.52 85.56 0.39 0.98 16
25 N -0.52 -10.27 5.26 -887.56 -4.67 -14.94 16
26 C 0.03 0.67 5.30 86.65 0.46 1.13 16
27 C -0.12 -1.86 7.06 31.80 0.22 -1.64 16
28 C -0.13 -1.59 6.93 31.47 0.22 -1.37 16
29 C 0.03 0.45 6.70 86.45 0.58 1.03 16
30 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16
31 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16
32 H 0.05 1.13 6.88 -2.39 -0.02 1.12 16
33 H 0.08 1.54 7.85 -2.39 -0.02 1.52 16
34 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16
35 H 0.35 9.71 7.94 -89.69 -0.71 8.99 16
36 H 0.11 2.79 8.09 -2.38 -0.02 2.77 16
37 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16
38 H 0.40 18.23 7.90 -92.71 -0.73 17.50 16
39 H 0.28 13.64 8.31 -92.71 -0.77 12.87 16
40 H 0.09 1.25 7.48 -2.39 -0.02 1.23 16
41 H 0.08 1.27 7.77 -2.39 -0.02 1.25 16
42 H 0.08 1.16 7.52 -2.39 -0.02 1.14 16
43 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16
44 H 0.09 2.18 5.97 -2.39 -0.01 2.17 16
45 H 0.03 0.67 8.02 -2.38 -0.02 0.65 16
46 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16
47 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16
48 H 0.08 0.80 8.14 -2.39 -0.02 0.79 16
49 H 0.08 0.86 8.14 -2.38 -0.02 0.85 16
50 H 0.05 0.70 7.57 -2.39 -0.02 0.68 16
51 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16
Total: -1.00 -69.11 403.06 -3.22 -72.33
By element:
Atomic # 1 Polarization: 40.72 SS G_CDS: -0.51 Total: 40.21 kcal
Atomic # 6 Polarization: 12.74 SS G_CDS: 6.71 Total: 19.45 kcal
Atomic # 7 Polarization: -115.72 SS G_CDS: -11.36 Total: -127.08 kcal
Atomic # 8 Polarization: -48.78 SS G_CDS: -0.09 Total: -48.87 kcal
Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.96 kcal
Total: -69.11 -3.22 -72.33 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001486130755.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -5.268 kcal
(2) G-P(sol) polarization free energy of solvation -69.106 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.375 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.223 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.330 kcal
(6) G-S(sol) free energy of system = (1) + (5) -77.598 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 3.17 seconds