Wall clock time and date at job start Tue Mar 31 2020 21:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47002 * 2 1 4 4 N 1.46507 * 109.47072 * 239.99778 * 2 1 3 5 5 C 1.34771 * 119.99754 * 85.00431 * 4 2 1 6 6 N 1.34775 * 119.99766 * 179.97438 * 5 4 2 7 7 O 1.21592 * 120.00384 * 359.97438 * 5 4 2 8 8 C 1.50700 * 109.46549 * 120.00031 * 2 1 3 9 9 O 1.21283 * 120.00207 * 101.56579 * 8 2 1 10 10 N 1.34774 * 119.99974 * 281.55371 * 8 2 1 11 11 C 1.47171 * 125.66313 * 355.13410 * 10 8 2 12 12 C 1.53702 * 107.11248 * 178.51553 * 11 10 8 13 13 C 1.54515 * 103.64111 * 338.44456 * 12 11 10 14 14 C 1.47485 * 125.65823 * 175.14410 * 10 8 2 15 15 H 1.09004 * 110.34970 * 85.14868 * 14 10 8 16 16 C 1.52994 * 110.35861 * 322.96707 * 14 10 8 17 17 C 1.52267 * 110.63552 * 220.32457 * 12 11 10 18 18 C 1.53312 * 109.41802 * 296.22870 * 17 12 11 19 19 N 1.46929 * 108.70815 * 306.48698 * 18 17 12 20 20 C 1.36934 * 120.56204 * 234.26330 * 19 18 17 21 21 H 1.08000 * 120.00121 * 149.85705 * 20 19 18 22 22 C 1.38818 * 120.00240 * 329.84735 * 20 19 18 23 23 N 1.31621 * 120.00064 * 162.54562 * 22 20 19 24 24 Si 1.86796 * 119.99919 * 342.54923 * 22 20 19 25 25 H 1.48507 * 109.47260 * 95.23560 * 24 22 20 26 26 H 1.48492 * 109.47193 * 215.23585 * 24 22 20 27 27 H 1.48500 * 109.47350 * 335.23681 * 24 22 20 28 28 C 1.46935 * 118.87122 * 54.23937 * 19 18 17 29 29 C 1.52278 * 110.62740 * 96.54895 * 12 11 10 30 30 H 1.09000 * 109.47573 * 295.25568 * 1 2 3 31 31 H 1.09008 * 109.46847 * 55.25929 * 1 2 3 32 32 H 1.09005 * 109.47352 * 175.25018 * 1 2 3 33 33 H 0.96997 * 119.99618 * 265.00338 * 4 2 1 34 34 H 0.96993 * 120.00127 * 0.02562 * 6 5 4 35 35 H 0.97006 * 119.99887 * 179.97438 * 6 5 4 36 36 H 1.08995 * 109.91323 * 59.14140 * 11 10 8 37 37 H 1.09001 * 110.06459 * 297.96834 * 11 10 8 38 38 H 1.09004 * 111.01036 * 152.88795 * 13 12 11 39 39 H 1.08993 * 111.01177 * 276.76227 * 13 12 11 40 40 H 1.08997 * 109.47618 * 61.44856 * 16 14 10 41 41 H 1.08998 * 109.47168 * 181.45529 * 16 14 10 42 42 H 1.09004 * 109.46833 * 301.45155 * 16 14 10 43 43 H 1.09003 * 109.47621 * 56.21321 * 17 12 11 44 44 H 1.08997 * 109.48330 * 176.24106 * 17 12 11 45 45 H 1.09007 * 109.60026 * 186.71956 * 18 17 12 46 46 H 1.09002 * 109.72966 * 66.33353 * 18 17 12 47 47 H 0.96995 * 119.99763 * 180.02562 * 23 22 20 48 48 H 1.09002 * 109.59703 * 185.99627 * 28 19 18 49 49 H 1.08999 * 109.59752 * 65.52311 * 28 19 18 50 50 H 1.09006 * 109.47974 * 183.75502 * 29 12 11 51 51 H 1.09000 * 109.48001 * 303.77498 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1962 5 6 2.1471 -0.0183 -2.3571 6 7 2.5969 -0.6536 -3.4574 7 8 1.8576 1.1613 -2.4119 8 6 2.0322 -0.7104 1.2305 9 8 2.4329 -1.8524 1.1504 10 7 2.0364 -0.0767 2.4200 11 6 1.6764 1.3328 2.6425 12 6 1.7928 1.5964 4.1522 13 6 1.6823 0.1878 4.7777 14 6 2.4026 -0.6808 3.7146 15 1 3.4822 -0.6401 3.8600 16 6 1.9114 -2.1280 3.7848 17 6 0.6474 2.4769 4.6331 18 6 0.7434 3.8509 3.9599 19 7 2.0883 4.3958 4.1905 20 6 2.2510 5.6353 4.7493 21 1 3.1233 5.8465 5.3501 22 6 1.2949 6.6204 4.5436 23 7 1.2559 7.6744 5.3310 24 14 0.0635 6.4502 3.1493 25 1 -1.1904 5.8461 3.6671 26 1 -0.2304 7.7906 2.5820 27 1 0.6323 5.5784 2.0902 28 6 3.2556 3.5879 3.8117 29 6 3.1433 2.2156 4.4861 30 1 -0.3634 0.4384 0.9294 31 1 -0.3633 0.5857 -0.8445 32 1 -0.3634 -1.0242 -0.0851 33 1 2.2490 -1.6318 -1.1526 34 1 2.8275 -1.5947 -3.4138 35 1 2.6892 -0.1698 -4.2931 36 1 0.6530 1.5112 2.3124 37 1 2.3605 1.9839 2.0982 38 1 2.2012 0.1436 5.7353 39 1 0.6398 -0.1112 4.8856 40 1 2.3874 -2.7119 2.9971 41 1 2.1666 -2.5517 4.7561 42 1 0.8298 -2.1514 3.6511 43 1 -0.3031 2.0106 4.3738 44 1 0.7104 2.5969 5.7147 45 1 -0.0013 4.5213 4.3892 46 1 0.5689 3.7489 2.8888 47 1 0.5876 8.3626 5.1874 48 1 4.1674 4.0848 4.1434 49 1 3.2778 3.4626 2.7291 50 1 3.2324 2.3330 5.5662 51 1 3.9404 1.5663 4.1241 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001488973760.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:35:51 Heat of formation + Delta-G solvation = -40.149299 kcal Electronic energy + Delta-G solvation = -31817.191695 eV Core-core repulsion = 27752.092661 eV Total energy + Delta-G solvation = -4065.099033 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.04872 -40.02464 -38.74096 -36.36326 -35.14297 -33.96889 -33.22139 -32.16911 -31.20173 -30.54989 -30.06556 -27.53772 -26.03009 -24.82179 -24.00905 -23.15994 -22.07660 -21.19261 -20.74810 -19.57924 -18.76787 -18.40708 -17.49192 -16.95147 -16.49001 -16.01833 -15.70878 -15.47908 -15.29076 -14.84728 -14.49372 -14.40849 -14.05580 -13.92228 -13.72607 -13.64681 -13.33177 -13.14503 -12.77903 -12.59668 -12.44945 -12.30540 -12.13442 -12.02359 -11.85604 -11.77821 -11.63038 -11.25249 -10.98505 -10.90036 -10.66528 -10.53238 -10.45750 -10.10358 -9.96046 -9.87536 -9.74747 -9.62184 -9.44031 -9.30861 -8.74162 -8.62776 -6.93808 -5.94962 -3.34771 2.30365 2.45733 2.94567 3.05581 3.31424 3.49776 3.51277 4.15133 4.23641 4.48610 4.52349 4.68272 4.77401 4.89152 4.93862 4.94740 5.06172 5.20906 5.26060 5.34734 5.40011 5.45988 5.53743 5.55261 5.62127 5.70600 5.79163 5.79742 5.87131 5.94033 6.00209 6.01923 6.05955 6.15383 6.17099 6.28823 6.34808 6.38681 6.42512 6.46605 6.60683 6.63786 6.65244 6.65398 6.90261 7.37187 7.70209 7.93282 7.98304 8.33393 8.38625 8.93882 9.71287 10.09263 11.21093 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.011392 B = 0.003954 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2457.170109 B = 7079.326242 C = 8727.589518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.145 3.855 3 H 0.112 0.888 4 N -0.729 5.729 5 C 0.708 3.292 6 N -0.867 5.867 7 O -0.590 6.590 8 C 0.531 3.469 9 O -0.544 6.544 10 N -0.604 5.604 11 C 0.099 3.901 12 C -0.055 4.055 13 C -0.122 4.122 14 C 0.136 3.864 15 H 0.077 0.923 16 C -0.164 4.164 17 C -0.119 4.119 18 C 0.124 3.876 19 N -0.604 5.604 20 C -0.260 4.260 21 H 0.084 0.916 22 C 0.025 3.975 23 N -0.911 5.911 24 Si 0.883 3.117 25 H -0.289 1.289 26 H -0.303 1.303 27 H -0.267 1.267 28 C 0.147 3.853 29 C -0.121 4.121 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.405 0.595 34 H 0.397 0.603 35 H 0.415 0.585 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.076 0.924 40 H 0.083 0.917 41 H 0.061 0.939 42 H 0.053 0.947 43 H 0.056 0.944 44 H 0.072 0.928 45 H 0.071 0.929 46 H 0.027 0.973 47 H 0.262 0.738 48 H 0.065 0.935 49 H 0.023 0.977 50 H 0.069 0.931 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.529 -22.101 -9.426 24.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.036 3.964 3 H 0.130 0.870 4 N -0.388 5.388 5 C 0.405 3.595 6 N -0.435 5.435 7 O -0.468 6.468 8 C 0.319 3.681 9 O -0.422 6.422 10 N -0.338 5.338 11 C -0.023 4.023 12 C -0.056 4.056 13 C -0.160 4.160 14 C 0.033 3.967 15 H 0.095 0.905 16 C -0.222 4.222 17 C -0.159 4.159 18 C -0.001 4.001 19 N -0.328 5.328 20 C -0.389 4.389 21 H 0.102 0.898 22 C -0.174 4.174 23 N -0.554 5.554 24 Si 0.714 3.286 25 H -0.217 1.217 26 H -0.232 1.232 27 H -0.191 1.191 28 C 0.021 3.979 29 C -0.160 4.160 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.082 0.918 33 H 0.242 0.758 34 H 0.225 0.775 35 H 0.248 0.752 36 H 0.091 0.909 37 H 0.099 0.901 38 H 0.103 0.897 39 H 0.094 0.906 40 H 0.102 0.898 41 H 0.080 0.920 42 H 0.072 0.928 43 H 0.075 0.925 44 H 0.090 0.910 45 H 0.089 0.911 46 H 0.045 0.955 47 H 0.072 0.928 48 H 0.083 0.917 49 H 0.041 0.959 50 H 0.087 0.913 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.402 -21.548 -9.368 23.500 hybrid contribution -0.543 -0.551 -1.023 1.282 sum -0.140 -22.098 -10.391 24.420 Atomic orbital electron populations 1.22116 0.92650 1.03066 1.03839 1.20579 0.95713 0.97765 0.82338 0.87040 1.44808 1.71536 1.14346 1.08064 1.15888 0.78077 0.84898 0.80593 1.42934 1.73579 1.14926 1.12032 1.91013 1.56993 1.14206 1.84563 1.20116 0.78069 0.86321 0.83614 1.90605 1.48431 1.18096 1.85067 1.48582 1.66192 1.12475 1.06519 1.22431 1.01191 0.80744 0.97945 1.20938 0.97865 0.94415 0.92370 1.22974 1.01060 0.94146 0.97821 1.21965 0.99193 0.93515 0.81979 0.90536 1.22145 1.01559 0.95561 1.02897 1.21946 0.95367 0.96793 1.01772 1.21401 0.88800 0.93024 0.96910 1.44303 0.99288 1.16654 1.72552 1.18911 1.09332 0.86043 1.24591 0.89823 1.25345 0.98675 0.95342 0.98077 1.69804 1.36336 1.11516 1.37751 0.86930 0.81053 0.76117 0.84519 1.21694 1.23183 1.19144 1.20997 0.91310 0.89951 0.95679 1.21938 0.94197 0.98064 1.01839 0.90786 0.90503 0.91803 0.75837 0.77528 0.75243 0.90933 0.90147 0.89690 0.90572 0.89843 0.92009 0.92798 0.92548 0.90966 0.91075 0.95540 0.92768 0.91696 0.95949 0.91261 0.92634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.68 9.47 37.16 0.35 -1.33 16 2 C 0.15 1.73 2.41 -69.08 -0.17 1.56 16 3 H 0.11 1.51 7.03 -51.93 -0.37 1.15 16 4 N -0.73 -7.74 5.04 -59.81 -0.30 -8.04 16 5 C 0.71 8.28 8.80 -86.92 -0.77 7.51 16 6 N -0.87 -6.05 8.88 27.63 0.25 -5.81 16 7 O -0.59 -9.64 16.84 5.28 0.09 -9.55 16 8 C 0.53 6.70 6.83 -10.99 -0.08 6.62 16 9 O -0.54 -7.58 13.71 5.56 0.08 -7.51 16 10 N -0.60 -7.38 3.25 -163.20 -0.53 -7.91 16 11 C 0.10 1.29 4.37 -3.31 -0.01 1.28 16 12 C -0.06 -0.74 0.53 -154.09 -0.08 -0.82 16 13 C -0.12 -1.33 5.41 -24.86 -0.13 -1.47 16 14 C 0.14 1.53 3.42 -66.32 -0.23 1.30 16 15 H 0.08 0.88 7.76 -51.93 -0.40 0.47 16 16 C -0.16 -1.73 8.77 37.15 0.33 -1.40 16 17 C -0.12 -1.86 4.71 -26.94 -0.13 -1.99 16 18 C 0.12 2.51 3.90 -3.65 -0.01 2.50 16 19 N -0.60 -13.56 2.73 -172.16 -0.47 -14.03 16 20 C -0.26 -7.08 10.03 -15.06 -0.15 -7.23 16 21 H 0.08 2.44 8.06 -52.49 -0.42 2.02 16 22 C 0.02 0.70 5.27 -17.43 -0.09 0.61 16 23 N -0.91 -27.69 13.97 55.49 0.78 -26.91 16 24 Si 0.88 22.11 24.36 -169.99 -4.14 17.97 16 25 H -0.29 -6.95 6.77 56.52 0.38 -6.57 16 26 H -0.30 -7.83 7.11 56.52 0.40 -7.43 16 27 H -0.27 -6.51 6.31 56.52 0.36 -6.15 16 28 C 0.15 2.70 6.22 -3.64 -0.02 2.68 16 29 C -0.12 -1.78 4.78 -26.94 -0.13 -1.91 16 30 H 0.07 0.75 6.70 -51.93 -0.35 0.41 16 31 H 0.08 0.88 8.14 -51.92 -0.42 0.45 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.41 3.68 7.74 -40.82 -0.32 3.37 16 34 H 0.40 1.58 8.84 -40.82 -0.36 1.21 16 35 H 0.42 2.47 8.93 -40.82 -0.36 2.10 16 36 H 0.07 0.92 6.19 -51.93 -0.32 0.60 16 37 H 0.08 1.15 5.99 -51.93 -0.31 0.84 16 38 H 0.08 0.86 8.01 -51.93 -0.42 0.44 16 39 H 0.08 0.80 7.93 -51.93 -0.41 0.39 16 40 H 0.08 1.02 5.93 -51.93 -0.31 0.71 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.06 0.76 8.10 -51.93 -0.42 0.34 16 44 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 45 H 0.07 1.61 4.65 -51.93 -0.24 1.37 16 46 H 0.03 0.53 6.21 -51.93 -0.32 0.21 16 47 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 48 H 0.06 1.22 7.93 -51.93 -0.41 0.81 16 49 H 0.02 0.41 6.52 -51.93 -0.34 0.07 16 50 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 51 H 0.06 0.72 7.49 -51.93 -0.39 0.33 16 LS Contribution 381.05 15.07 5.74 5.74 Total: -1.00 -33.82 381.05 -8.04 -41.86 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -8.21 Total: 6.27 kcal Atomic # 6 Polarization: 9.24 SS G_CDS: -1.32 Total: 7.92 kcal Atomic # 7 Polarization: -62.42 SS G_CDS: -0.28 Total: -62.70 kcal Atomic # 8 Polarization: -17.22 SS G_CDS: 0.17 Total: -17.05 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.14 Total: 17.97 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.82 -8.04 -41.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001488973760.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.714 kcal (2) G-P(sol) polarization free energy of solvation -33.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds