Wall clock time and date at job start Tue Mar 31 2020 22:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 110.06678 * 2 1 4 4 C 1.53993 * 109.91882 * 238.78628 * 2 1 3 5 5 H 1.09004 * 110.39039 * 120.46424 * 4 2 1 6 6 C 1.50701 * 110.30664 * 358.34502 * 4 2 1 7 7 O 1.21277 * 120.00177 * 275.57524 * 6 4 2 8 8 N 1.34781 * 120.00149 * 95.57827 * 6 4 2 9 9 C 1.46494 * 119.99947 * 179.97438 * 8 6 4 10 10 H 1.09000 * 112.85538 * 23.80115 * 9 8 6 11 11 C 1.53778 * 113.61423 * 154.99853 * 9 8 6 12 12 C 1.53782 * 87.08333 * 89.19746 * 11 9 8 13 13 H 1.09001 * 113.61331 * 270.88260 * 12 11 9 14 14 N 1.46905 * 113.61504 * 140.06458 * 12 11 9 15 15 C 1.46900 * 110.99745 * 156.53197 * 14 12 11 16 16 C 1.50709 * 109.46561 * 180.02562 * 15 14 12 17 17 O 1.21289 * 119.99994 * 359.97438 * 16 15 14 18 18 N 1.34776 * 119.99545 * 180.02562 * 16 15 14 19 19 C 1.37094 * 119.99963 * 180.02562 * 18 16 15 20 20 H 1.07999 * 119.99831 * 359.97438 * 19 18 16 21 21 C 1.38949 * 120.00094 * 179.97438 * 19 18 16 22 22 N 1.31409 * 120.00179 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99940 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47238 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47327 * 120.00090 * 23 21 19 26 26 H 1.48498 * 109.47273 * 240.00133 * 23 21 19 27 27 C 1.53780 * 87.16818 * 25.47692 * 12 11 9 28 28 C 1.54586 * 105.14294 * 239.42775 * 4 2 1 29 29 C 1.54939 * 102.92292 * 338.04237 * 28 4 2 30 30 N 1.47900 * 109.91272 * 121.20206 * 2 1 3 31 31 C 1.46905 * 110.99773 * 265.19672 * 30 2 1 32 32 H 1.08997 * 109.47814 * 183.81646 * 1 2 3 33 33 H 1.09006 * 109.47269 * 303.82193 * 1 2 3 34 34 H 1.09009 * 109.46674 * 63.81889 * 1 2 3 35 35 H 0.97003 * 120.00030 * 359.97438 * 8 6 4 36 36 H 1.09000 * 113.61709 * 334.64967 * 11 9 8 37 37 H 1.09001 * 113.61832 * 203.74422 * 11 9 8 38 38 H 1.00902 * 110.99865 * 280.48435 * 14 12 11 39 39 H 1.08996 * 109.46860 * 299.99560 * 15 14 12 40 40 H 1.08994 * 109.47261 * 60.00405 * 15 14 12 41 41 H 0.97003 * 119.99847 * 359.97438 * 18 16 15 42 42 H 0.97003 * 120.00324 * 180.02562 * 22 21 19 43 43 H 1.08998 * 113.61666 * 89.08099 * 27 12 11 44 44 H 1.09001 * 113.60880 * 219.97601 * 27 12 11 45 45 H 1.09001 * 110.72540 * 96.39986 * 28 4 2 46 46 H 1.09004 * 110.72771 * 219.50708 * 28 4 2 47 47 H 1.08998 * 110.66998 * 155.85135 * 29 28 4 48 48 H 1.09003 * 110.66616 * 278.98292 * 29 28 4 49 49 H 1.08997 * 109.47022 * 302.47137 * 31 30 2 50 50 H 1.08995 * 109.47410 * 62.47962 * 31 30 2 51 51 H 1.09010 * 109.46889 * 182.47998 * 31 30 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9040 1.0238 0.0000 4 6 2.0546 -0.7503 -1.2382 5 1 2.6711 -0.0907 -1.8491 6 6 0.9046 -1.2895 -2.0492 7 8 0.4043 -2.3552 -1.7581 8 7 0.4320 -0.5873 -3.0982 9 6 -0.6856 -1.1117 -3.8868 10 1 -1.3029 -1.8165 -3.3298 11 6 -1.4946 -0.0217 -4.6095 12 6 -0.5189 -0.1883 -5.7864 13 1 0.3591 0.4543 -5.7201 14 7 -1.1692 -0.1315 -7.1025 15 6 -0.2122 0.2596 -8.1461 16 6 -0.9142 0.3076 -9.4788 17 8 -2.0953 0.0416 -9.5521 18 7 -0.2292 0.6450 -10.5894 19 6 -0.8678 0.6892 -11.8017 20 1 -1.9197 0.4532 -11.8668 21 6 -0.1617 1.0375 -12.9466 22 7 1.1180 1.3251 -12.8674 23 14 -1.0318 1.0970 -14.5986 24 1 -2.4602 0.7326 -14.4192 25 1 -0.9370 2.4690 -15.1589 26 1 -0.3897 0.1361 -15.5311 27 6 -0.2741 -1.6201 -5.2816 28 6 2.9058 -1.9118 -0.6760 29 6 3.2680 -1.4186 0.7474 30 7 2.0337 -0.7204 1.1894 31 6 2.3210 0.2124 2.2873 32 1 -0.3634 -1.0253 0.0684 33 1 -0.3634 0.5720 0.8538 34 1 -0.3633 0.4535 -0.9223 35 1 0.8319 0.2653 -3.3308 36 1 -1.4370 0.9553 -4.1296 37 1 -2.5165 -0.3196 -4.8441 38 1 -1.6091 -1.0114 -7.3267 39 1 0.1954 1.2437 -7.9149 40 1 0.5978 -0.4686 -8.1877 41 1 0.7155 0.8573 -10.5308 42 1 1.6109 1.5687 -13.6666 43 1 -0.9629 -2.3542 -5.6996 44 1 0.7682 -1.9327 -5.3439 45 1 2.3212 -2.8306 -0.6287 46 1 3.8036 -2.0581 -1.2766 47 1 3.4887 -2.2615 1.4022 48 1 4.1097 -0.7268 0.7122 49 1 3.0445 0.9558 1.9526 50 1 1.4006 0.7117 2.5902 51 1 2.7312 -0.3382 3.1340 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001490888599.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:18 Heat of formation + Delta-G solvation = -42.076366 kcal Electronic energy + Delta-G solvation = -29084.542186 eV Core-core repulsion = 25019.359588 eV Total energy + Delta-G solvation = -4065.182597 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.02762 -39.59187 -38.29326 -37.78963 -34.59301 -33.84923 -33.00976 -32.20173 -31.65805 -31.19015 -27.34583 -26.65032 -25.79230 -25.32938 -24.48378 -23.22734 -22.28578 -21.41886 -19.91888 -19.76210 -19.09906 -17.88974 -17.48008 -16.63443 -16.35255 -16.04026 -15.63445 -15.36687 -15.13596 -14.95496 -14.74459 -14.53319 -14.29747 -14.02913 -13.77462 -13.59511 -13.12200 -13.00103 -12.87320 -12.69925 -12.59695 -12.52106 -12.20656 -12.08027 -11.82697 -11.73437 -11.61456 -11.58513 -11.42819 -11.31105 -11.16618 -11.08643 -10.82382 -10.47404 -10.35022 -10.22936 -9.99549 -9.53268 -9.24029 -8.91683 -8.46196 -8.03205 -7.96225 -6.43096 -3.83843 2.34875 2.83825 3.15564 3.26248 3.33656 3.47351 3.89601 4.06602 4.08576 4.09736 4.29535 4.38799 4.43181 4.56039 4.71263 4.77182 4.80763 4.83388 4.92014 4.94223 4.96796 5.01433 5.15707 5.21692 5.25846 5.33499 5.36770 5.43827 5.47481 5.50404 5.58858 5.64861 5.71953 5.75170 5.77856 5.83742 5.86295 5.96329 5.99103 6.01086 6.24628 6.39339 6.42267 6.56556 7.22990 7.25429 7.54309 7.64797 7.99003 8.05459 8.59955 9.16833 9.53085 10.04469 10.74716 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.028372 B = 0.001644 C = 0.001609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.643301 B =17026.345600 C =17401.728205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.080 3.920 3 H 0.061 0.939 4 C -0.120 4.120 5 H 0.094 0.906 6 C 0.533 3.467 7 O -0.531 6.531 8 N -0.713 5.713 9 C 0.119 3.881 10 H 0.103 0.897 11 C -0.132 4.132 12 C 0.068 3.932 13 H 0.093 0.907 14 N -0.657 5.657 15 C 0.050 3.950 16 C 0.440 3.560 17 O -0.583 6.583 18 N -0.564 5.564 19 C -0.299 4.299 20 H 0.104 0.896 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.930 3.070 24 H -0.268 1.268 25 H -0.281 1.281 26 H -0.282 1.282 27 C -0.181 4.181 28 C -0.112 4.112 29 C 0.036 3.964 30 N -0.515 5.515 31 C 0.016 3.984 32 H 0.075 0.925 33 H 0.057 0.943 34 H 0.061 0.939 35 H 0.400 0.600 36 H 0.072 0.928 37 H 0.101 0.899 38 H 0.353 0.647 39 H 0.085 0.915 40 H 0.043 0.957 41 H 0.392 0.608 42 H 0.271 0.729 43 H 0.093 0.907 44 H 0.068 0.932 45 H 0.096 0.904 46 H 0.076 0.924 47 H 0.086 0.914 48 H 0.046 0.954 49 H 0.028 0.972 50 H 0.069 0.931 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.328 -1.354 28.149 29.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.029 4.029 3 H 0.079 0.921 4 C -0.142 4.142 5 H 0.112 0.888 6 C 0.319 3.681 7 O -0.406 6.406 8 N -0.364 5.364 9 C 0.013 3.987 10 H 0.121 0.879 11 C -0.171 4.171 12 C -0.043 4.043 13 H 0.111 0.889 14 N -0.288 5.288 15 C -0.082 4.082 16 C 0.225 3.775 17 O -0.467 6.467 18 N -0.201 5.201 19 C -0.429 4.429 20 H 0.122 0.878 21 C -0.180 4.180 22 N -0.544 5.544 23 Si 0.757 3.243 24 H -0.192 1.192 25 H -0.207 1.207 26 H -0.208 1.208 27 C -0.222 4.222 28 C -0.150 4.150 29 C -0.092 4.092 30 N -0.239 5.239 31 C -0.133 4.133 32 H 0.094 0.906 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.234 0.766 36 H 0.091 0.909 37 H 0.119 0.881 38 H 0.173 0.827 39 H 0.103 0.897 40 H 0.061 0.939 41 H 0.225 0.775 42 H 0.081 0.919 43 H 0.111 0.889 44 H 0.087 0.913 45 H 0.114 0.886 46 H 0.095 0.905 47 H 0.105 0.895 48 H 0.064 0.936 49 H 0.046 0.954 50 H 0.088 0.912 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.652 -1.971 28.421 29.044 hybrid contribution 1.739 0.581 -1.400 2.307 sum 7.391 -1.390 27.021 28.048 Atomic orbital electron populations 1.21963 0.93367 1.03769 1.01632 1.22248 0.96939 0.95441 0.88248 0.92141 1.22277 0.96033 0.99228 0.96673 0.88809 1.20178 0.83878 0.84459 0.79596 1.90702 1.59247 1.22036 1.68634 1.45795 1.35628 1.24158 1.30811 1.21803 0.88287 0.97409 0.91159 0.87867 1.23453 0.99966 0.98444 0.95242 1.23095 0.96374 0.95264 0.89562 0.88893 1.60019 1.30332 1.38564 0.99886 1.21707 0.93812 1.00986 0.91740 1.19840 0.88030 0.84542 0.85043 1.90524 1.15832 1.54243 1.86134 1.41875 1.11892 1.60077 1.06241 1.19764 0.96368 1.43450 0.83281 0.87847 1.25264 0.95618 0.97145 0.99948 1.69618 1.07484 1.46834 1.30426 0.85795 0.79542 0.77769 0.81213 1.19198 1.20742 1.20779 1.24246 1.02454 0.98671 0.96787 1.22520 0.99228 0.98460 0.94837 1.23247 0.91157 0.98574 0.96200 1.64710 1.26675 1.26264 1.06287 1.22534 1.00833 0.95127 0.94805 0.90605 0.92401 0.92012 0.76568 0.90908 0.88106 0.82679 0.89719 0.93869 0.77491 0.91935 0.88856 0.91307 0.88597 0.90515 0.89518 0.93553 0.95356 0.91189 0.91084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 8.37 37.16 0.31 -0.92 16 2 C 0.08 0.58 3.09 -66.64 -0.21 0.38 16 3 H 0.06 0.37 7.69 -51.93 -0.40 -0.03 16 4 C -0.12 -0.88 3.37 -90.42 -0.31 -1.18 16 5 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 6 C 0.53 5.17 4.73 -10.98 -0.05 5.12 16 7 O -0.53 -7.23 14.52 5.56 0.08 -7.15 16 8 N -0.71 -5.80 4.86 -52.88 -0.26 -6.06 16 9 C 0.12 1.14 4.33 -66.98 -0.29 0.85 16 10 H 0.10 1.14 7.46 -51.93 -0.39 0.75 16 11 C -0.13 -1.28 7.63 -25.92 -0.20 -1.48 16 12 C 0.07 0.76 4.04 -66.90 -0.27 0.49 16 13 H 0.09 0.94 7.88 -51.93 -0.41 0.53 16 14 N -0.66 -10.15 6.24 -107.13 -0.67 -10.81 16 15 C 0.05 0.86 6.02 -4.97 -0.03 0.83 16 16 C 0.44 10.32 7.82 -10.98 -0.09 10.23 16 17 O -0.58 -15.81 15.78 5.55 0.09 -15.72 16 18 N -0.56 -14.24 5.29 -10.96 -0.06 -14.30 16 19 C -0.30 -8.34 9.68 -14.94 -0.14 -8.49 16 20 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 21 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 22 N -0.90 -24.45 13.05 55.50 0.72 -23.73 16 23 Si 0.93 21.00 29.55 -169.99 -5.02 15.98 16 24 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 25 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 26 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 27 C -0.18 -1.89 7.52 -25.78 -0.19 -2.08 16 28 C -0.11 -0.84 6.56 -24.87 -0.16 -1.00 16 29 C 0.04 0.24 6.56 -1.90 -0.01 0.22 16 30 N -0.52 -3.98 5.18 -230.78 -1.20 -5.18 16 31 C 0.02 0.09 9.41 60.07 0.57 0.66 16 32 H 0.07 0.83 7.00 -51.93 -0.36 0.47 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.48 7.11 -51.92 -0.37 0.11 16 35 H 0.40 2.37 8.70 -40.82 -0.36 2.01 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.35 5.70 7.91 -39.29 -0.31 5.39 16 39 H 0.08 1.33 8.13 -51.93 -0.42 0.91 16 40 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.39 9.42 7.90 -40.82 -0.32 9.10 16 42 H 0.27 6.92 8.31 -40.82 -0.34 6.59 16 43 H 0.09 1.01 7.83 -51.93 -0.41 0.60 16 44 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.10 0.95 6.92 -51.93 -0.36 0.59 16 46 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 48 H 0.05 0.25 8.00 -51.93 -0.42 -0.16 16 49 H 0.03 0.14 7.99 -51.93 -0.42 -0.27 16 50 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 51 H 0.07 0.36 8.14 -51.92 -0.42 -0.06 16 LS Contribution 407.83 15.07 6.15 6.15 Total: -1.00 -33.28 407.83 -10.01 -43.29 By element: Atomic # 1 Polarization: 22.09 SS G_CDS: -8.67 Total: 13.42 kcal Atomic # 6 Polarization: 5.28 SS G_CDS: -1.17 Total: 4.11 kcal Atomic # 7 Polarization: -58.62 SS G_CDS: -1.46 Total: -60.08 kcal Atomic # 8 Polarization: -23.04 SS G_CDS: 0.17 Total: -22.87 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -33.28 -10.01 -43.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490888599.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.217 kcal (2) G-P(sol) polarization free energy of solvation -33.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds