Wall clock time and date at job start Tue Mar 31 2020 22:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 110.06678 * 2 1 4 4 C 1.53993 * 109.91882 * 238.78628 * 2 1 3 5 5 H 1.09004 * 110.39039 * 120.46424 * 4 2 1 6 6 C 1.50701 * 110.30664 * 358.34502 * 4 2 1 7 7 O 1.21277 * 120.00177 * 275.57524 * 6 4 2 8 8 N 1.34781 * 120.00149 * 95.57827 * 6 4 2 9 9 C 1.46494 * 119.99947 * 179.97438 * 8 6 4 10 10 H 1.09000 * 112.85538 * 23.80115 * 9 8 6 11 11 C 1.53778 * 113.61423 * 154.99853 * 9 8 6 12 12 C 1.53782 * 87.08333 * 89.19746 * 11 9 8 13 13 H 1.09001 * 113.61331 * 270.88260 * 12 11 9 14 14 N 1.46905 * 113.61504 * 140.06458 * 12 11 9 15 15 C 1.46900 * 110.99745 * 156.53197 * 14 12 11 16 16 C 1.50709 * 109.46561 * 180.02562 * 15 14 12 17 17 O 1.21289 * 119.99994 * 359.97438 * 16 15 14 18 18 N 1.34776 * 119.99545 * 180.02562 * 16 15 14 19 19 C 1.37094 * 119.99963 * 180.02562 * 18 16 15 20 20 H 1.07999 * 119.99831 * 359.97438 * 19 18 16 21 21 C 1.38949 * 120.00094 * 179.97438 * 19 18 16 22 22 N 1.31409 * 120.00179 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99940 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47238 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47327 * 120.00090 * 23 21 19 26 26 H 1.48498 * 109.47273 * 240.00133 * 23 21 19 27 27 C 1.53780 * 87.16818 * 25.47692 * 12 11 9 28 28 C 1.54586 * 105.14294 * 239.42775 * 4 2 1 29 29 C 1.54939 * 102.92292 * 338.04237 * 28 4 2 30 30 N 1.47900 * 109.91272 * 121.20206 * 2 1 3 31 31 C 1.46905 * 110.99773 * 265.19672 * 30 2 1 32 32 H 1.08997 * 109.47814 * 183.81646 * 1 2 3 33 33 H 1.09006 * 109.47269 * 303.82193 * 1 2 3 34 34 H 1.09009 * 109.46674 * 63.81889 * 1 2 3 35 35 H 0.97003 * 120.00030 * 359.97438 * 8 6 4 36 36 H 1.09000 * 113.61709 * 334.64967 * 11 9 8 37 37 H 1.09001 * 113.61832 * 203.74422 * 11 9 8 38 38 H 1.00902 * 110.99865 * 280.48435 * 14 12 11 39 39 H 1.08996 * 109.46860 * 299.99560 * 15 14 12 40 40 H 1.08994 * 109.47261 * 60.00405 * 15 14 12 41 41 H 0.97003 * 119.99847 * 359.97438 * 18 16 15 42 42 H 0.97003 * 120.00324 * 180.02562 * 22 21 19 43 43 H 1.08998 * 113.61666 * 89.08099 * 27 12 11 44 44 H 1.09001 * 113.60880 * 219.97601 * 27 12 11 45 45 H 1.09001 * 110.72540 * 96.39986 * 28 4 2 46 46 H 1.09004 * 110.72771 * 219.50708 * 28 4 2 47 47 H 1.08998 * 110.66998 * 155.85135 * 29 28 4 48 48 H 1.09003 * 110.66616 * 278.98292 * 29 28 4 49 49 H 1.08997 * 109.47022 * 302.47137 * 31 30 2 50 50 H 1.08995 * 109.47410 * 62.47962 * 31 30 2 51 51 H 1.09010 * 109.46889 * 182.47998 * 31 30 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9040 1.0238 0.0000 4 6 2.0546 -0.7503 -1.2382 5 1 2.6711 -0.0907 -1.8491 6 6 0.9046 -1.2895 -2.0492 7 8 0.4043 -2.3552 -1.7581 8 7 0.4320 -0.5873 -3.0982 9 6 -0.6856 -1.1117 -3.8868 10 1 -1.3029 -1.8165 -3.3298 11 6 -1.4946 -0.0217 -4.6095 12 6 -0.5189 -0.1883 -5.7864 13 1 0.3591 0.4543 -5.7201 14 7 -1.1692 -0.1315 -7.1025 15 6 -0.2122 0.2596 -8.1461 16 6 -0.9142 0.3076 -9.4788 17 8 -2.0953 0.0416 -9.5521 18 7 -0.2292 0.6450 -10.5894 19 6 -0.8678 0.6892 -11.8017 20 1 -1.9197 0.4532 -11.8668 21 6 -0.1617 1.0375 -12.9466 22 7 1.1180 1.3251 -12.8674 23 14 -1.0318 1.0970 -14.5986 24 1 -2.4602 0.7326 -14.4192 25 1 -0.9370 2.4690 -15.1589 26 1 -0.3897 0.1361 -15.5311 27 6 -0.2741 -1.6201 -5.2816 28 6 2.9058 -1.9118 -0.6760 29 6 3.2680 -1.4186 0.7474 30 7 2.0337 -0.7204 1.1894 31 6 2.3210 0.2124 2.2873 32 1 -0.3634 -1.0253 0.0684 33 1 -0.3634 0.5720 0.8538 34 1 -0.3633 0.4535 -0.9223 35 1 0.8319 0.2653 -3.3308 36 1 -1.4370 0.9553 -4.1296 37 1 -2.5165 -0.3196 -4.8441 38 1 -1.6091 -1.0114 -7.3267 39 1 0.1954 1.2437 -7.9149 40 1 0.5978 -0.4686 -8.1877 41 1 0.7155 0.8573 -10.5308 42 1 1.6109 1.5687 -13.6666 43 1 -0.9629 -2.3542 -5.6996 44 1 0.7682 -1.9327 -5.3439 45 1 2.3212 -2.8306 -0.6287 46 1 3.8036 -2.0581 -1.2766 47 1 3.4887 -2.2615 1.4022 48 1 4.1097 -0.7268 0.7122 49 1 3.0445 0.9558 1.9526 50 1 1.4006 0.7117 2.5902 51 1 2.7312 -0.3382 3.1340 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490888599.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:17 Heat of formation + Delta-G solvation = -68.830138 kcal Electronic energy + Delta-G solvation = -29085.702316 eV Core-core repulsion = 25019.359588 eV Total energy + Delta-G solvation = -4066.342728 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.74942 -40.49742 -39.87032 -38.70589 -36.12142 -35.38504 -33.84568 -33.25879 -32.88154 -32.27458 -28.53878 -27.60224 -26.62947 -26.11168 -25.85366 -24.25086 -23.06253 -21.96909 -21.20244 -20.58108 -20.38477 -19.86569 -18.19242 -17.75833 -17.21180 -16.99437 -16.87813 -16.36222 -16.21092 -16.04488 -15.84300 -15.62717 -15.52922 -15.32110 -14.82037 -14.43691 -14.28324 -14.04351 -13.60080 -13.53734 -13.51657 -13.47359 -13.29759 -13.14560 -13.08155 -12.82883 -12.71282 -12.56672 -12.40096 -12.25769 -12.13052 -12.11368 -11.90263 -11.74529 -11.68159 -11.51495 -11.35088 -10.79334 -10.32893 -10.03169 -10.01149 -9.39449 -9.22436 -8.47000 -5.95564 1.36701 1.42242 1.56286 1.60708 2.05708 2.13229 2.29463 2.95891 2.99003 3.20474 3.45468 3.49566 3.52848 3.62883 3.74913 3.84445 3.99120 4.08482 4.17753 4.26243 4.31398 4.33330 4.44882 4.49947 4.50549 4.52140 4.58549 4.62663 4.71478 4.77475 4.81918 4.82525 4.87026 4.96014 4.98676 5.02087 5.03534 5.06290 5.14965 5.23105 5.31965 5.41295 5.59538 5.91771 5.94053 6.10335 6.17499 6.40773 6.58468 6.60486 7.12932 7.29062 7.56656 8.12177 8.70534 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.028372 B = 0.001644 C = 0.001609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.643301 B =17026.345600 C =17401.728205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.081 3.919 3 H 0.082 0.918 4 C -0.116 4.116 5 H 0.125 0.875 6 C 0.532 3.468 7 O -0.576 6.576 8 N -0.700 5.700 9 C 0.128 3.872 10 H 0.086 0.914 11 C -0.123 4.123 12 C 0.069 3.931 13 H 0.114 0.886 14 N -0.671 5.671 15 C 0.066 3.934 16 C 0.436 3.564 17 O -0.625 6.625 18 N -0.573 5.573 19 C -0.334 4.334 20 H 0.078 0.922 21 C -0.012 4.012 22 N -0.920 5.920 23 Si 0.993 3.007 24 H -0.274 1.274 25 H -0.270 1.270 26 H -0.271 1.271 27 C -0.177 4.177 28 C -0.114 4.114 29 C 0.039 3.961 30 N -0.540 5.540 31 C 0.016 3.984 32 H 0.042 0.958 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.415 0.585 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.345 0.655 39 H 0.107 0.893 40 H 0.065 0.935 41 H 0.397 0.603 42 H 0.278 0.722 43 H 0.085 0.915 44 H 0.069 0.931 45 H 0.064 0.936 46 H 0.093 0.907 47 H 0.085 0.915 48 H 0.065 0.935 49 H 0.040 0.960 50 H 0.069 0.931 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.122 0.227 28.649 30.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.027 4.027 3 H 0.100 0.900 4 C -0.138 4.138 5 H 0.143 0.857 6 C 0.319 3.681 7 O -0.455 6.455 8 N -0.352 5.352 9 C 0.021 3.979 10 H 0.104 0.896 11 C -0.162 4.162 12 C -0.041 4.041 13 H 0.132 0.868 14 N -0.302 5.302 15 C -0.067 4.067 16 C 0.223 3.777 17 O -0.511 6.511 18 N -0.211 5.211 19 C -0.464 4.464 20 H 0.096 0.904 21 C -0.212 4.212 22 N -0.561 5.561 23 Si 0.816 3.184 24 H -0.199 1.199 25 H -0.196 1.196 26 H -0.196 1.196 27 C -0.218 4.218 28 C -0.152 4.152 29 C -0.088 4.088 30 N -0.265 5.265 31 C -0.132 4.132 32 H 0.061 0.939 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.252 0.748 36 H 0.108 0.892 37 H 0.109 0.891 38 H 0.165 0.835 39 H 0.125 0.875 40 H 0.083 0.917 41 H 0.231 0.769 42 H 0.087 0.913 43 H 0.104 0.896 44 H 0.088 0.912 45 H 0.082 0.918 46 H 0.111 0.889 47 H 0.103 0.897 48 H 0.083 0.917 49 H 0.058 0.942 50 H 0.087 0.913 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 7.490 -0.353 28.939 29.894 hybrid contribution 1.149 0.054 -1.484 1.878 sum 8.639 -0.299 27.454 28.783 Atomic orbital electron populations 1.21894 0.94544 1.01685 1.02088 1.22270 0.95980 0.96405 0.88092 0.90032 1.22353 0.95218 0.99536 0.96729 0.85707 1.20652 0.84030 0.83812 0.79574 1.90691 1.60762 1.24189 1.69829 1.45679 1.34920 1.24506 1.30082 1.21586 0.88552 0.97100 0.90644 0.89619 1.23364 0.99178 0.99189 0.94426 1.23254 0.97264 0.96004 0.87551 0.86819 1.60054 1.30741 1.38410 1.01013 1.21579 0.93715 1.02943 0.88432 1.20980 0.87716 0.82261 0.86701 1.90493 1.17975 1.55524 1.87152 1.41940 1.12107 1.60778 1.06237 1.19706 0.95792 1.45699 0.85213 0.90411 1.26022 0.96319 0.96119 1.02752 1.69670 1.08226 1.46546 1.31634 0.84876 0.78048 0.78330 0.77109 1.19884 1.19556 1.19631 1.24188 1.02288 0.98228 0.97088 1.22497 0.99424 0.97275 0.96005 1.23242 0.91307 0.98835 0.95401 1.64671 1.27599 1.27256 1.06971 1.22550 1.01154 0.95105 0.94371 0.93895 0.91869 0.91581 0.74784 0.89237 0.89064 0.83540 0.87477 0.91713 0.76933 0.91298 0.89630 0.91247 0.91753 0.88862 0.89680 0.91727 0.94175 0.91255 0.90721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 8.37 71.98 0.60 -1.67 16 2 C 0.08 1.02 3.09 45.06 0.14 1.16 16 3 H 0.08 0.71 7.69 -2.39 -0.02 0.69 16 4 C -0.12 -1.46 3.37 -10.66 -0.04 -1.50 16 5 H 0.12 0.80 8.14 -2.38 -0.02 0.78 16 6 C 0.53 9.83 4.73 87.66 0.41 10.25 16 7 O -0.58 -16.12 14.52 -3.02 -0.04 -16.17 16 8 N -0.70 -10.07 4.86 -439.62 -2.14 -12.21 16 9 C 0.13 2.32 4.33 45.61 0.20 2.51 16 10 H 0.09 1.92 7.46 -2.39 -0.02 1.90 16 11 C -0.12 -2.17 7.63 31.12 0.24 -1.94 16 12 C 0.07 1.40 4.04 45.44 0.18 1.58 16 13 H 0.11 1.86 7.88 -2.39 -0.02 1.84 16 14 N -0.67 -19.87 6.24 -492.84 -3.07 -22.95 16 15 C 0.07 2.14 6.02 85.56 0.52 2.65 16 16 C 0.44 20.48 7.82 87.66 0.69 21.16 16 17 O -0.62 -34.58 15.78 -3.06 -0.05 -34.63 16 18 N -0.57 -29.15 5.29 -306.98 -1.62 -30.77 16 19 C -0.33 -18.98 9.68 84.04 0.81 -18.17 16 20 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 21 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 22 N -0.92 -49.18 13.05 21.66 0.28 -48.90 16 23 Si 0.99 42.79 29.55 68.60 2.03 44.81 16 24 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 25 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 26 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 27 C -0.18 -3.50 7.52 31.21 0.23 -3.26 16 28 C -0.11 -1.57 6.56 31.80 0.21 -1.36 16 29 C 0.04 0.46 6.56 86.65 0.57 1.02 16 30 N -0.54 -7.61 5.18 -884.05 -4.58 -12.19 16 31 C 0.02 0.16 9.41 127.69 1.20 1.36 16 32 H 0.04 0.97 7.00 -2.39 -0.02 0.95 16 33 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 34 H 0.07 0.94 7.11 -2.38 -0.02 0.92 16 35 H 0.41 3.54 8.70 -92.71 -0.81 2.73 16 36 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.34 11.09 7.91 -89.69 -0.71 10.38 16 39 H 0.11 3.05 8.13 -2.39 -0.02 3.03 16 40 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.40 19.01 7.90 -92.71 -0.73 18.28 16 42 H 0.28 13.84 8.31 -92.71 -0.77 13.07 16 43 H 0.09 1.84 7.83 -2.39 -0.02 1.82 16 44 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 45 H 0.06 1.32 6.92 -2.39 -0.02 1.30 16 46 H 0.09 0.94 8.14 -2.38 -0.02 0.92 16 47 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 48 H 0.06 0.52 8.00 -2.39 -0.02 0.50 16 49 H 0.04 0.29 7.99 -2.39 -0.02 0.27 16 50 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 51 H 0.07 0.64 8.14 -2.38 -0.02 0.63 16 Total: -1.00 -74.00 407.83 -4.06 -78.06 By element: Atomic # 1 Polarization: 42.62 SS G_CDS: -1.29 Total: 41.32 kcal Atomic # 6 Polarization: 7.18 SS G_CDS: 6.43 Total: 13.61 kcal Atomic # 7 Polarization: -115.88 SS G_CDS: -11.13 Total: -127.01 kcal Atomic # 8 Polarization: -50.70 SS G_CDS: -0.09 Total: -50.80 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.81 kcal Total: -74.00 -4.06 -78.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490888599.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.228 kcal (2) G-P(sol) polarization free energy of solvation -73.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds