Wall clock time and date at job start Tue Mar 31 2020 21:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 110.65663 * 2 1 4 4 C 1.54595 * 110.73455 * 123.30608 * 2 1 3 5 5 N 1.48116 * 103.42167 * 81.24153 * 4 2 1 6 6 C 1.34776 * 127.03378 * 219.28941 * 5 4 2 7 7 O 1.21277 * 120.00215 * 179.68273 * 6 5 4 8 8 C 1.50701 * 119.99977 * 359.68699 * 6 5 4 9 9 N 1.46504 * 109.46923 * 179.97438 * 8 6 5 10 10 C 1.34777 * 119.99854 * 179.97438 * 9 8 6 11 11 O 1.21593 * 119.99953 * 0.02562 * 10 9 8 12 12 N 1.34773 * 120.00097 * 180.27545 * 10 9 8 13 13 C 1.47021 * 125.64656 * 359.42380 * 12 10 9 14 14 C 1.54317 * 107.27768 * 180.96706 * 13 12 10 15 15 C 1.55158 * 102.86164 * 22.51910 * 14 13 12 16 16 C 1.47426 * 125.64872 * 179.72565 * 12 10 9 17 17 C 1.47485 * 105.93288 * 39.02531 * 5 4 2 18 18 C 1.54002 * 107.08491 * 334.78302 * 17 5 4 19 19 H 1.09000 * 110.33063 * 120.19485 * 18 17 5 20 20 C 1.52998 * 110.32452 * 242.30917 * 18 17 5 21 21 N 1.46495 * 109.46916 * 293.54275 * 20 18 17 22 22 C 1.36938 * 119.99892 * 180.02562 * 21 20 18 23 23 H 1.07999 * 120.00304 * 359.97438 * 22 21 20 24 24 C 1.38817 * 120.00213 * 180.02562 * 22 21 20 25 25 N 1.31617 * 119.99715 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 120.00207 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.46849 * 90.00001 * 26 24 22 28 28 H 1.48500 * 109.47086 * 209.99989 * 26 24 22 29 29 H 1.48497 * 109.46788 * 329.99941 * 26 24 22 30 30 H 1.08995 * 109.47076 * 183.18956 * 1 2 3 31 31 H 1.08998 * 109.47221 * 303.19135 * 1 2 3 32 32 H 1.09005 * 109.47179 * 63.18813 * 1 2 3 33 33 H 1.09007 * 110.61523 * 322.72788 * 4 2 1 34 34 H 1.08994 * 110.55011 * 199.72454 * 4 2 1 35 35 H 1.08998 * 109.47477 * 59.99807 * 8 6 5 36 36 H 1.08997 * 109.47150 * 299.99702 * 8 6 5 37 37 H 0.97000 * 120.00410 * 0.02562 * 9 8 6 38 38 H 1.08996 * 109.88500 * 300.50741 * 13 12 10 39 39 H 1.08995 * 109.88483 * 61.67607 * 13 12 10 40 40 H 1.09008 * 110.92380 * 264.11330 * 14 13 12 41 41 H 1.08997 * 110.59772 * 140.78475 * 14 13 12 42 42 H 1.08997 * 111.00636 * 206.22943 * 15 14 13 43 43 H 1.09003 * 111.00105 * 82.37980 * 15 14 13 44 44 H 1.09003 * 110.36552 * 274.67448 * 16 12 10 45 45 H 1.08993 * 110.36849 * 36.89181 * 16 12 10 46 46 H 1.09004 * 109.90903 * 94.13738 * 17 5 4 47 47 H 1.08993 * 109.91853 * 215.22289 * 17 5 4 48 48 H 1.08996 * 109.47264 * 53.54403 * 20 18 17 49 49 H 1.09009 * 109.47180 * 173.54439 * 20 18 17 50 50 H 0.96997 * 120.00274 * 0.02562 * 21 20 18 51 51 H 0.97001 * 120.00343 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9145 1.0199 0.0000 4 6 2.0773 -0.7939 1.2083 5 7 1.9938 -2.2032 0.7601 6 6 1.6327 -3.2702 1.4999 7 8 1.6028 -4.3739 0.9981 8 6 1.2658 -3.0920 2.9506 9 7 0.9130 -4.3913 3.5283 10 6 0.5492 -4.4765 4.8233 11 8 0.5133 -3.4751 5.5119 12 7 0.2300 -5.6726 5.3562 13 6 0.2247 -6.9561 4.6392 14 6 -0.2263 -8.0392 5.6417 15 6 -1.0007 -7.2212 6.7088 16 6 -0.1776 -5.9096 6.7530 17 6 2.3806 -2.1989 -0.6631 18 6 2.0776 -0.7915 -1.2101 19 1 2.9893 -0.3267 -1.5854 20 6 1.0256 -0.8673 -2.3184 21 7 1.5827 -1.5765 -3.4728 22 6 0.8190 -1.7668 -4.5934 23 1 -0.1943 -1.3944 -4.6260 24 6 1.3467 -2.4393 -5.6871 25 7 2.5813 -2.8936 -5.6473 26 14 0.3045 -2.6996 -7.2154 27 1 0.4918 -1.5551 -8.1429 28 1 0.7195 -3.9560 -7.8895 29 1 -1.1261 -2.7945 -6.8287 30 1 -0.3633 -1.0260 0.0572 31 1 -0.3633 0.5626 0.8600 32 1 -0.3634 0.4636 -0.9172 33 1 1.4539 -0.6325 2.0878 34 1 3.1112 -0.5158 1.4123 35 1 0.4141 -2.4163 3.0297 36 1 2.1141 -2.6720 3.4910 37 1 0.9420 -5.1903 2.9791 38 1 -0.4718 -6.9102 3.8021 39 1 1.2276 -7.1830 4.2777 40 1 0.6336 -8.5387 6.0881 41 1 -0.8839 -8.7606 5.1568 42 1 -0.9846 -7.7253 7.6750 43 1 -2.0243 -7.0293 6.3869 44 1 0.6995 -6.0334 7.3883 45 1 -0.7930 -5.0855 7.1136 46 1 3.4451 -2.4132 -0.7592 47 1 1.8014 -2.9446 -1.2076 48 1 0.1494 -1.4019 -1.9518 49 1 0.7378 0.1412 -2.6158 50 1 2.4926 -1.9113 -3.4435 51 1 2.9500 -3.3639 -6.4113 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501114996.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:53 Heat of formation + Delta-G solvation = -43.677868 kcal Electronic energy + Delta-G solvation = -29708.141842 eV Core-core repulsion = 25642.889799 eV Total energy + Delta-G solvation = -4065.252043 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 2.29 seconds Orbital eigenvalues (eV) -40.69960 -40.07031 -38.30812 -37.61666 -34.68717 -34.58571 -32.82870 -31.96581 -31.17930 -29.65948 -29.25347 -27.77628 -26.62143 -25.08635 -23.75938 -23.02781 -21.80765 -21.58010 -20.25967 -19.62107 -19.09411 -18.51129 -17.10756 -17.00605 -16.70803 -16.59345 -15.92004 -15.61146 -15.41352 -14.85755 -14.50065 -14.19165 -13.98642 -13.87450 -13.65280 -13.54152 -13.38240 -13.26672 -12.98308 -12.81289 -12.76251 -12.45305 -12.19761 -11.88576 -11.82418 -11.78252 -11.65457 -11.63445 -11.19945 -11.03285 -10.85450 -10.59183 -10.49605 -10.45137 -10.25762 -9.98505 -9.93020 -9.67573 -9.44973 -8.87356 -8.84315 -8.64830 -6.91762 -5.75769 -3.04542 2.18586 2.50702 2.95138 2.95358 3.44300 3.49404 3.51249 3.71590 4.14868 4.21451 4.26583 4.47914 4.50487 4.60821 4.82998 4.83824 4.90953 4.95358 5.11758 5.14800 5.20090 5.29976 5.30429 5.38110 5.41492 5.43285 5.44627 5.53396 5.56738 5.59313 5.71131 5.75470 5.80447 5.89521 5.99959 6.04782 6.09693 6.13704 6.25920 6.30957 6.39262 6.47820 6.71197 6.75734 6.86125 7.48946 7.68614 7.70633 8.03198 8.32669 8.42920 9.54111 10.11211 10.45466 11.47054 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.014333 B = 0.002223 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.000516 B =12590.125189 C =13867.454098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.098 4.098 3 H 0.090 0.910 4 C 0.098 3.902 5 N -0.612 5.612 6 C 0.524 3.476 7 O -0.537 6.537 8 C 0.126 3.874 9 N -0.732 5.732 10 C 0.726 3.274 11 O -0.592 6.592 12 N -0.637 5.637 13 C 0.095 3.905 14 C -0.130 4.130 15 C -0.135 4.135 16 C 0.125 3.875 17 C 0.113 3.887 18 C -0.104 4.104 19 H 0.086 0.914 20 C 0.162 3.838 21 N -0.733 5.733 22 C -0.239 4.239 23 H 0.070 0.930 24 C -0.014 4.014 25 N -0.933 5.933 26 Si 0.907 3.093 27 H -0.290 1.290 28 H -0.291 1.291 29 H -0.282 1.282 30 H 0.056 0.944 31 H 0.051 0.949 32 H 0.067 0.933 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.409 0.591 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.078 0.922 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.077 0.923 44 H 0.066 0.934 45 H 0.079 0.921 46 H 0.066 0.934 47 H 0.092 0.908 48 H 0.024 0.976 49 H 0.022 0.978 50 H 0.383 0.617 51 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.314 -3.274 26.131 26.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.118 4.118 3 H 0.108 0.892 4 C -0.025 4.025 5 N -0.345 5.345 6 C 0.312 3.688 7 O -0.414 6.414 8 C -0.002 4.002 9 N -0.391 5.391 10 C 0.428 3.572 11 O -0.471 6.471 12 N -0.376 5.376 13 C -0.028 4.028 14 C -0.168 4.168 15 C -0.173 4.173 16 C 0.002 3.998 17 C -0.009 4.009 18 C -0.123 4.123 19 H 0.105 0.895 20 C 0.034 3.966 21 N -0.378 5.378 22 C -0.370 4.370 23 H 0.088 0.912 24 C -0.210 4.210 25 N -0.581 5.581 26 Si 0.738 3.262 27 H -0.217 1.217 28 H -0.218 1.218 29 H -0.208 1.208 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.115 0.885 36 H 0.114 0.886 37 H 0.246 0.754 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.097 0.903 41 H 0.102 0.898 42 H 0.104 0.896 43 H 0.095 0.905 44 H 0.084 0.916 45 H 0.097 0.903 46 H 0.084 0.916 47 H 0.110 0.890 48 H 0.042 0.958 49 H 0.040 0.960 50 H 0.217 0.783 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.487 -3.141 26.246 26.662 hybrid contribution -0.094 -0.617 -1.308 1.449 sum -3.581 -3.758 24.938 25.472 Atomic orbital electron populations 1.21832 0.94224 1.02158 1.01992 1.22194 0.96749 0.99033 0.93807 0.89219 1.22675 1.01387 0.80469 0.97940 1.48711 1.66276 1.07147 1.12406 1.20012 0.77312 0.83709 0.87780 1.90726 1.53598 1.24235 1.72854 1.20840 1.02662 0.86058 0.90663 1.44763 1.73245 1.10881 1.10179 1.15253 0.78078 0.82386 0.81475 1.90928 1.61009 1.34259 1.60856 1.47520 1.72309 1.05557 1.12221 1.22063 1.01696 0.83254 0.95824 1.22608 1.00725 0.96989 0.96430 1.22818 0.99358 0.95260 0.99873 1.22081 0.98341 0.97666 0.81743 1.22206 1.00453 0.98875 0.79373 1.22348 1.00578 0.94016 0.95393 0.89539 1.20795 0.93657 0.95469 0.86647 1.42395 1.15411 1.67386 1.12582 1.19199 0.95886 1.29907 0.92046 0.91248 1.24741 0.96552 1.01175 0.98499 1.69653 1.14147 1.43354 1.30966 0.86193 0.79412 0.77241 0.83368 1.21746 1.21769 1.20796 0.92469 0.93026 0.91357 0.90020 0.90454 0.88531 0.88598 0.75359 0.91260 0.91312 0.90344 0.89787 0.89599 0.90455 0.91599 0.90283 0.91583 0.89001 0.95803 0.95987 0.78324 0.93513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 7.98 37.16 0.30 -1.37 16 2 C -0.10 -1.09 3.59 -88.93 -0.32 -1.41 16 3 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 4 C 0.10 0.97 6.38 -2.32 -0.01 0.95 16 5 N -0.61 -8.17 3.21 -169.98 -0.55 -8.71 16 6 C 0.52 7.44 7.96 -10.99 -0.09 7.36 16 7 O -0.54 -9.57 16.00 5.56 0.09 -9.48 16 8 C 0.13 1.46 5.09 -5.19 -0.03 1.43 16 9 N -0.73 -8.85 5.49 -66.41 -0.36 -9.22 16 10 C 0.73 9.39 8.49 -86.92 -0.74 8.65 16 11 O -0.59 -9.42 16.60 5.28 0.09 -9.33 16 12 N -0.64 -6.37 3.33 -176.25 -0.59 -6.96 16 13 C 0.09 0.70 6.14 -3.07 -0.02 0.68 16 14 C -0.13 -0.64 6.95 -24.90 -0.17 -0.81 16 15 C -0.13 -0.68 7.08 -24.58 -0.17 -0.85 16 16 C 0.12 0.98 6.91 -2.53 -0.02 0.96 16 17 C 0.11 1.80 6.31 -2.98 -0.02 1.78 16 18 C -0.10 -1.55 2.99 -89.25 -0.27 -1.82 16 19 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 20 C 0.16 3.12 4.18 -4.05 -0.02 3.10 16 21 N -0.73 -18.29 5.33 -59.91 -0.32 -18.61 16 22 C -0.24 -6.70 9.99 -15.06 -0.15 -6.85 16 23 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 24 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 25 N -0.93 -28.32 13.06 55.49 0.72 -27.60 16 26 Si 0.91 22.61 29.55 -169.99 -5.02 17.58 16 27 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 28 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 29 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 30 H 0.06 0.75 7.62 -51.93 -0.40 0.36 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.85 6.68 -51.93 -0.35 0.50 16 33 H 0.08 0.65 7.14 -51.93 -0.37 0.28 16 34 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.10 1.05 7.90 -51.93 -0.41 0.64 16 36 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.41 4.89 6.42 -40.82 -0.26 4.62 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.08 0.33 8.14 -51.92 -0.42 -0.09 16 41 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 43 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.08 0.69 8.03 -51.93 -0.42 0.27 16 46 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 47 H 0.09 1.83 7.49 -51.93 -0.39 1.44 16 48 H 0.02 0.49 6.86 -51.93 -0.36 0.13 16 49 H 0.02 0.43 7.55 -51.92 -0.39 0.04 16 50 H 0.38 10.03 7.51 -40.82 -0.31 9.72 16 51 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 404.62 15.07 6.10 6.10 Total: -1.00 -35.43 404.62 -10.35 -45.78 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: -8.69 Total: 9.14 kcal Atomic # 6 Polarization: 13.13 SS G_CDS: -1.82 Total: 11.31 kcal Atomic # 7 Polarization: -70.01 SS G_CDS: -1.09 Total: -71.10 kcal Atomic # 8 Polarization: -18.99 SS G_CDS: 0.18 Total: -18.81 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -35.43 -10.35 -45.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501114996.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.103 kcal (2) G-P(sol) polarization free energy of solvation -35.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.30 seconds