Wall clock time and date at job start Tue Mar 31 2020 22:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09007 * 109.47127 * 2 1 4 4 C 1.53001 * 109.47269 * 239.99962 * 2 1 3 5 5 C 1.50696 * 109.47106 * 174.99661 * 4 2 1 6 6 O 1.21284 * 120.00437 * 0.02562 * 5 4 2 7 7 N 1.34781 * 120.00037 * 179.97438 * 5 4 2 8 8 C 1.46497 * 120.00309 * 180.02562 * 7 5 4 9 9 C 1.52991 * 109.47384 * 180.02562 * 8 7 5 10 10 H 1.09002 * 109.43432 * 300.77979 * 9 8 7 11 11 C 1.53148 * 109.43839 * 60.68771 * 9 8 7 12 12 C 1.53702 * 108.87332 * 66.17490 * 11 9 8 13 13 H 1.09000 * 112.10092 * 187.62676 * 12 11 9 14 14 C 1.54610 * 107.83278 * 311.59687 * 12 11 9 15 15 C 1.55900 * 103.99477 * 88.88405 * 14 12 11 16 16 C 1.54611 * 104.89811 * 359.97236 * 15 14 12 17 17 H 1.08997 * 112.18680 * 146.81803 * 16 15 14 18 18 C 1.53146 * 109.43885 * 180.86705 * 9 8 7 19 19 N 1.48294 * 104.26144 * 25.16174 * 16 15 14 20 20 C 1.36927 * 128.21218 * 138.37854 * 19 16 15 21 21 H 1.08011 * 120.00224 * 214.90488 * 20 19 16 22 22 C 1.38817 * 120.00243 * 34.90826 * 20 19 16 23 23 N 1.31619 * 119.99464 * 5.00526 * 22 20 19 24 24 Si 1.86797 * 119.99957 * 185.00637 * 22 20 19 25 25 H 1.48503 * 109.47188 * 90.00165 * 24 22 20 26 26 H 1.48505 * 109.46704 * 210.00022 * 24 22 20 27 27 H 1.48501 * 109.47296 * 329.99533 * 24 22 20 28 28 N 1.46494 * 109.47313 * 119.99694 * 2 1 3 29 29 C 1.34780 * 120.00146 * 275.00029 * 28 2 1 30 30 N 1.34775 * 120.00129 * 179.97438 * 29 28 2 31 31 O 1.21586 * 120.00124 * 0.02562 * 29 28 2 32 32 H 1.08996 * 109.47340 * 60.00098 * 1 2 3 33 33 H 1.09004 * 109.47372 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.47553 * 300.00036 * 1 2 3 35 35 H 1.09002 * 109.46730 * 54.99773 * 4 2 1 36 36 H 1.09004 * 109.46921 * 294.99699 * 4 2 1 37 37 H 0.97004 * 119.99657 * 0.02562 * 7 5 4 38 38 H 1.09005 * 109.46931 * 60.00333 * 8 7 5 39 39 H 1.09004 * 109.47057 * 300.00372 * 8 7 5 40 40 H 1.08998 * 109.57195 * 185.99527 * 11 9 8 41 41 H 1.09002 * 109.56744 * 306.23710 * 11 9 8 42 42 H 1.08999 * 110.38226 * 207.48874 * 14 12 11 43 43 H 1.08997 * 110.38443 * 329.85519 * 14 12 11 44 44 H 1.09001 * 110.29496 * 241.11596 * 15 14 12 45 45 H 1.08999 * 110.32349 * 118.84976 * 15 14 12 46 46 H 1.09002 * 109.56899 * 53.63930 * 18 9 8 47 47 H 1.08996 * 109.57242 * 174.00372 * 18 9 8 48 48 H 0.97003 * 119.99442 * 179.97438 * 23 22 20 49 49 H 0.97004 * 120.00263 * 95.00162 * 28 2 1 50 50 H 0.97004 * 120.00279 * 0.02562 * 30 29 28 51 51 H 0.96999 * 120.00091 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5418 -0.6148 -1.3127 6 8 4.1450 -0.0210 -0.4441 7 7 4.2149 -1.1804 -2.3343 8 6 5.6750 -1.0775 -2.3958 9 6 6.1850 -1.7986 -3.6450 10 1 5.8841 -2.8456 -3.6076 11 6 5.5877 -1.1411 -4.8925 12 6 6.1416 0.2874 -5.0152 13 1 5.6512 0.8507 -5.8091 14 6 5.9945 0.9722 -3.6368 15 6 7.3191 0.6163 -2.8957 16 6 8.1194 -0.2421 -3.9022 17 1 9.1946 -0.0886 -3.8104 18 6 7.7129 -1.7091 -3.6971 19 7 7.6049 0.1756 -5.2288 20 6 8.3129 0.4039 -6.3784 21 1 8.0006 1.1818 -7.0595 22 6 9.4320 -0.3645 -6.6685 23 7 9.7557 -1.3756 -5.8904 24 14 10.4784 0.0365 -8.1629 25 1 11.5443 0.9962 -7.7779 26 1 11.0980 -1.2093 -8.6820 27 1 9.6249 0.6412 -9.2171 28 7 2.0183 -0.6905 1.1961 29 6 2.1470 -0.0181 2.3571 30 7 2.5958 -0.6535 3.4577 31 8 1.8574 1.1615 2.4118 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3634 -1.0277 0.0005 34 1 -0.3634 0.5138 0.8900 35 1 1.6053 -0.2617 -2.1369 36 1 1.7516 -1.7716 -1.2055 37 1 3.7325 -1.6557 -3.0288 38 1 6.1093 -1.5370 -1.5078 39 1 5.9636 -0.0273 -2.4396 40 1 5.8634 -1.7167 -5.7761 41 1 4.5019 -1.1072 -4.8030 42 1 5.9013 2.0515 -3.7572 43 1 5.1312 0.5727 -3.1046 44 1 7.1053 0.0430 -1.9936 45 1 7.8700 1.5237 -2.6482 46 1 8.1323 -2.0754 -2.7600 47 1 8.0859 -2.3107 -4.5259 48 1 10.5375 -1.9128 -6.0934 49 1 2.2490 -1.6317 1.1527 50 1 2.8266 -1.5947 3.4142 51 1 2.6889 -0.1695 4.2931 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501166396.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:33 Heat of formation + Delta-G solvation = 38.711596 kcal Electronic energy + Delta-G solvation = -31358.175015 eV Core-core repulsion = 27296.495647 eV Total energy + Delta-G solvation = -4061.679368 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 2.94 seconds Orbital eigenvalues (eV) -41.19307 -40.08516 -38.88668 -35.87743 -34.60795 -33.79488 -32.80115 -31.47357 -31.04270 -30.57520 -29.77308 -28.34569 -26.25941 -23.63085 -23.25672 -22.48985 -20.96618 -20.62580 -20.37067 -19.37518 -18.75634 -18.44216 -17.38695 -17.13108 -16.82630 -15.98281 -15.82829 -15.22723 -15.05843 -14.64279 -14.44283 -14.24862 -14.02170 -13.56184 -13.20085 -12.95150 -12.75546 -12.65121 -12.63074 -12.25345 -12.10353 -11.92326 -11.67214 -11.47869 -11.38286 -11.22267 -11.14518 -10.90204 -10.73981 -10.52436 -10.31055 -10.14131 -9.90410 -9.77609 -9.73865 -9.57716 -9.41111 -9.34397 -9.18500 -9.05883 -8.53443 -8.12887 -6.56210 -5.85088 -3.31569 2.74955 2.85183 3.23749 3.34354 3.37461 3.41301 3.42018 4.35098 4.43037 4.49096 4.73478 4.96347 5.20953 5.25375 5.26212 5.29704 5.32918 5.43657 5.51225 5.52694 5.62357 5.76784 5.82924 5.84473 5.92844 6.01212 6.10996 6.13141 6.21016 6.32369 6.43565 6.45133 6.47848 6.59919 6.60853 6.66421 6.70192 6.78280 6.81922 6.91972 6.99139 7.11638 7.17876 7.45439 7.65010 7.72945 7.81843 7.88440 8.30205 8.41434 8.59567 9.09831 9.69401 10.61211 11.27544 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.027773 B = 0.002488 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.934607 B =11249.284332 C =11485.277864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.176 3.824 3 H 0.097 0.903 4 C -0.154 4.154 5 C 0.500 3.500 6 O -0.533 6.533 7 N -0.723 5.723 8 C 0.004 3.996 9 C -0.084 4.084 10 H 0.048 0.952 11 C -0.120 4.120 12 C 0.149 3.851 13 H 0.063 0.937 14 C -0.160 4.160 15 C -0.170 4.170 16 C 0.186 3.814 17 H 0.079 0.921 18 C -0.113 4.113 19 N -0.578 5.578 20 C -0.235 4.235 21 H 0.065 0.935 22 C 0.012 3.988 23 N -0.897 5.897 24 Si 0.905 3.095 25 H -0.287 1.287 26 H -0.290 1.290 27 H -0.279 1.279 28 N -0.728 5.728 29 C 0.712 3.288 30 N -0.871 5.871 31 O -0.596 6.596 32 H 0.067 0.933 33 H 0.055 0.945 34 H 0.064 0.936 35 H 0.108 0.892 36 H 0.094 0.906 37 H 0.392 0.608 38 H 0.046 0.954 39 H 0.192 0.808 40 H 0.063 0.937 41 H 0.038 0.962 42 H 0.050 0.950 43 H 0.094 0.906 44 H 0.087 0.913 45 H 0.053 0.947 46 H 0.034 0.966 47 H 0.098 0.902 48 H 0.254 0.746 49 H 0.392 0.608 50 H 0.394 0.606 51 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.566 -4.707 11.706 20.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.070 3.930 3 H 0.115 0.885 4 C -0.195 4.195 5 C 0.285 3.715 6 O -0.410 6.410 7 N -0.374 5.374 8 C -0.115 4.115 9 C -0.103 4.103 10 H 0.067 0.933 11 C -0.160 4.160 12 C 0.041 3.959 13 H 0.081 0.919 14 C -0.199 4.199 15 C -0.208 4.208 16 C 0.079 3.921 17 H 0.097 0.903 18 C -0.153 4.153 19 N -0.300 5.300 20 C -0.364 4.364 21 H 0.082 0.918 22 C -0.188 4.188 23 N -0.540 5.540 24 Si 0.735 3.265 25 H -0.214 1.214 26 H -0.217 1.217 27 H -0.204 1.204 28 N -0.383 5.383 29 C 0.410 3.590 30 N -0.438 5.438 31 O -0.475 6.475 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.127 0.873 36 H 0.113 0.887 37 H 0.226 0.774 38 H 0.064 0.936 39 H 0.207 0.793 40 H 0.082 0.918 41 H 0.056 0.944 42 H 0.069 0.931 43 H 0.112 0.888 44 H 0.105 0.895 45 H 0.071 0.929 46 H 0.053 0.947 47 H 0.117 0.883 48 H 0.064 0.936 49 H 0.225 0.775 50 H 0.222 0.778 51 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -16.170 -3.363 12.028 20.432 hybrid contribution 0.676 -1.305 -0.853 1.699 sum -15.494 -4.667 11.176 19.666 Atomic orbital electron populations 1.22221 0.95099 1.02011 1.02917 1.20500 0.92938 0.97957 0.81589 0.88452 1.22089 0.93815 1.03263 1.00305 1.20496 0.89558 0.79483 0.81957 1.90752 1.70087 1.41806 1.38309 1.46429 1.09211 1.55925 1.25863 1.25218 0.77651 1.11100 0.97491 1.21251 0.98302 0.97262 0.93471 0.93332 1.22146 0.96685 0.99548 0.97612 1.21540 0.87967 0.92631 0.93761 0.91918 1.23625 0.97830 0.99902 0.98514 1.23771 0.96626 1.00816 0.99611 1.21165 0.96773 0.90180 0.83949 0.90272 1.22103 0.91293 1.00727 1.01189 1.44943 0.99156 1.79810 1.06089 1.18818 1.08228 1.11809 0.97572 0.91763 1.25285 1.00437 0.95309 0.97761 1.69877 1.26942 1.18653 1.38562 0.86254 0.80332 0.77158 0.82737 1.21427 1.21658 1.20443 1.44926 1.71335 1.13138 1.08894 1.15860 0.77681 0.84825 0.80588 1.42964 1.73870 1.14751 1.12230 1.90947 1.57509 1.14312 1.84691 0.91410 0.92581 0.91702 0.87339 0.88747 0.77384 0.93593 0.79273 0.91829 0.94365 0.93094 0.88823 0.89506 0.92853 0.94713 0.88340 0.93637 0.77539 0.77837 0.75628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.28 9.48 37.15 0.35 -0.92 16 2 C 0.18 1.73 2.13 -67.94 -0.15 1.59 16 3 H 0.10 1.31 7.39 -51.92 -0.38 0.92 16 4 C -0.15 -1.22 5.24 -27.88 -0.15 -1.36 16 5 C 0.50 6.13 7.46 -10.99 -0.08 6.05 16 6 O -0.53 -8.82 15.35 5.55 0.09 -8.73 16 7 N -0.72 -8.74 4.39 -60.30 -0.26 -9.00 16 8 C 0.00 0.06 2.66 -4.05 -0.01 0.05 16 9 C -0.08 -1.42 2.76 -90.47 -0.25 -1.67 16 10 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 11 C -0.12 -2.10 5.27 -26.29 -0.14 -2.24 16 12 C 0.15 2.94 4.28 -65.73 -0.28 2.66 16 13 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 14 C -0.16 -2.86 5.79 -24.34 -0.14 -3.00 16 15 C -0.17 -3.22 5.75 -24.34 -0.14 -3.36 16 16 C 0.19 4.14 3.12 -65.78 -0.21 3.93 16 17 H 0.08 2.00 7.66 -51.93 -0.40 1.60 16 18 C -0.11 -2.32 5.17 -26.34 -0.14 -2.46 16 19 N -0.58 -13.84 2.72 -152.81 -0.42 -14.25 16 20 C -0.24 -6.27 10.28 -15.06 -0.15 -6.42 16 21 H 0.06 1.71 7.83 -52.48 -0.41 1.30 16 22 C 0.01 0.32 5.43 -17.43 -0.09 0.22 16 23 N -0.90 -24.58 10.37 55.49 0.58 -24.00 16 24 Si 0.91 21.17 29.56 -169.99 -5.02 16.15 16 25 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 26 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 27 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 28 N -0.73 -7.12 4.22 -58.68 -0.25 -7.37 16 29 C 0.71 8.74 8.80 -86.92 -0.77 7.97 16 30 N -0.87 -6.93 8.88 27.63 0.25 -6.69 16 31 O -0.60 -10.05 16.84 5.29 0.09 -9.97 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.39 3.88 7.36 -40.82 -0.30 3.58 16 38 H 0.05 0.75 7.98 -51.93 -0.41 0.34 16 39 H 0.19 3.20 1.13 -164.63 -0.19 3.01 16 40 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.04 0.54 6.76 -51.93 -0.35 0.19 16 42 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.09 1.52 4.04 -51.93 -0.21 1.31 16 44 H 0.09 1.55 4.83 -51.93 -0.25 1.30 16 45 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.10 2.37 6.67 -51.93 -0.35 2.03 16 48 H 0.25 6.80 8.31 -40.82 -0.34 6.46 16 49 H 0.39 2.87 8.62 -40.82 -0.35 2.52 16 50 H 0.39 1.95 8.84 -40.82 -0.36 1.59 16 51 H 0.41 2.90 8.93 -40.82 -0.36 2.54 16 LS Contribution 383.22 15.07 5.78 5.78 Total: -1.00 -33.77 383.22 -9.63 -43.41 By element: Atomic # 1 Polarization: 21.75 SS G_CDS: -8.11 Total: 13.64 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: -2.34 Total: 1.05 kcal Atomic # 7 Polarization: -61.21 SS G_CDS: -0.11 Total: -61.32 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: 0.17 Total: -18.70 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.77 -9.63 -43.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501166396.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.120 kcal (2) G-P(sol) polarization free energy of solvation -33.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.94 seconds