Wall clock time and date at job start Tue Mar 31 2020 22:42:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09007 * 109.47127 * 2 1 4 4 C 1.53001 * 109.47269 * 239.99962 * 2 1 3 5 5 C 1.50696 * 109.47106 * 174.99661 * 4 2 1 6 6 O 1.21284 * 120.00437 * 0.02562 * 5 4 2 7 7 N 1.34781 * 120.00037 * 179.97438 * 5 4 2 8 8 C 1.46497 * 120.00309 * 180.02562 * 7 5 4 9 9 C 1.52991 * 109.47384 * 180.02562 * 8 7 5 10 10 H 1.09002 * 109.43432 * 300.77979 * 9 8 7 11 11 C 1.53148 * 109.43839 * 60.68771 * 9 8 7 12 12 C 1.53702 * 108.87332 * 66.17490 * 11 9 8 13 13 H 1.09000 * 112.10092 * 187.62676 * 12 11 9 14 14 C 1.54610 * 107.83278 * 311.59687 * 12 11 9 15 15 C 1.55900 * 103.99477 * 88.88405 * 14 12 11 16 16 C 1.54611 * 104.89811 * 359.97236 * 15 14 12 17 17 H 1.08997 * 112.18680 * 146.81803 * 16 15 14 18 18 C 1.53146 * 109.43885 * 180.86705 * 9 8 7 19 19 N 1.48294 * 104.26144 * 25.16174 * 16 15 14 20 20 C 1.36927 * 128.21218 * 138.37854 * 19 16 15 21 21 H 1.08011 * 120.00224 * 214.90488 * 20 19 16 22 22 C 1.38817 * 120.00243 * 34.90826 * 20 19 16 23 23 N 1.31619 * 119.99464 * 5.00526 * 22 20 19 24 24 Si 1.86797 * 119.99957 * 185.00637 * 22 20 19 25 25 H 1.48503 * 109.47188 * 90.00165 * 24 22 20 26 26 H 1.48505 * 109.46704 * 210.00022 * 24 22 20 27 27 H 1.48501 * 109.47296 * 329.99533 * 24 22 20 28 28 N 1.46494 * 109.47313 * 119.99694 * 2 1 3 29 29 C 1.34780 * 120.00146 * 275.00029 * 28 2 1 30 30 N 1.34775 * 120.00129 * 179.97438 * 29 28 2 31 31 O 1.21586 * 120.00124 * 0.02562 * 29 28 2 32 32 H 1.08996 * 109.47340 * 60.00098 * 1 2 3 33 33 H 1.09004 * 109.47372 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.47553 * 300.00036 * 1 2 3 35 35 H 1.09002 * 109.46730 * 54.99773 * 4 2 1 36 36 H 1.09004 * 109.46921 * 294.99699 * 4 2 1 37 37 H 0.97004 * 119.99657 * 0.02562 * 7 5 4 38 38 H 1.09005 * 109.46931 * 60.00333 * 8 7 5 39 39 H 1.09004 * 109.47057 * 300.00372 * 8 7 5 40 40 H 1.08998 * 109.57195 * 185.99527 * 11 9 8 41 41 H 1.09002 * 109.56744 * 306.23710 * 11 9 8 42 42 H 1.08999 * 110.38226 * 207.48874 * 14 12 11 43 43 H 1.08997 * 110.38443 * 329.85519 * 14 12 11 44 44 H 1.09001 * 110.29496 * 241.11596 * 15 14 12 45 45 H 1.08999 * 110.32349 * 118.84976 * 15 14 12 46 46 H 1.09002 * 109.56899 * 53.63930 * 18 9 8 47 47 H 1.08996 * 109.57242 * 174.00372 * 18 9 8 48 48 H 0.97003 * 119.99442 * 179.97438 * 23 22 20 49 49 H 0.97004 * 120.00263 * 95.00162 * 28 2 1 50 50 H 0.97004 * 120.00279 * 0.02562 * 30 29 28 51 51 H 0.96999 * 120.00091 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5418 -0.6148 -1.3127 6 8 4.1450 -0.0210 -0.4441 7 7 4.2149 -1.1804 -2.3343 8 6 5.6750 -1.0775 -2.3958 9 6 6.1850 -1.7986 -3.6450 10 1 5.8841 -2.8456 -3.6076 11 6 5.5877 -1.1411 -4.8925 12 6 6.1416 0.2874 -5.0152 13 1 5.6512 0.8507 -5.8091 14 6 5.9945 0.9722 -3.6368 15 6 7.3191 0.6163 -2.8957 16 6 8.1194 -0.2421 -3.9022 17 1 9.1946 -0.0886 -3.8104 18 6 7.7129 -1.7091 -3.6971 19 7 7.6049 0.1756 -5.2288 20 6 8.3129 0.4039 -6.3784 21 1 8.0006 1.1818 -7.0595 22 6 9.4320 -0.3645 -6.6685 23 7 9.7557 -1.3756 -5.8904 24 14 10.4784 0.0365 -8.1629 25 1 11.5443 0.9962 -7.7779 26 1 11.0980 -1.2093 -8.6820 27 1 9.6249 0.6412 -9.2171 28 7 2.0183 -0.6905 1.1961 29 6 2.1470 -0.0181 2.3571 30 7 2.5958 -0.6535 3.4577 31 8 1.8574 1.1615 2.4118 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3634 -1.0277 0.0005 34 1 -0.3634 0.5138 0.8900 35 1 1.6053 -0.2617 -2.1369 36 1 1.7516 -1.7716 -1.2055 37 1 3.7325 -1.6557 -3.0288 38 1 6.1093 -1.5370 -1.5078 39 1 5.9636 -0.0273 -2.4396 40 1 5.8634 -1.7167 -5.7761 41 1 4.5019 -1.1072 -4.8030 42 1 5.9013 2.0515 -3.7572 43 1 5.1312 0.5727 -3.1046 44 1 7.1053 0.0430 -1.9936 45 1 7.8700 1.5237 -2.6482 46 1 8.1323 -2.0754 -2.7600 47 1 8.0859 -2.3107 -4.5259 48 1 10.5375 -1.9128 -6.0934 49 1 2.2490 -1.6317 1.1527 50 1 2.8266 -1.5947 3.4142 51 1 2.6889 -0.1695 4.2931 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501166396.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:31 Heat of formation + Delta-G solvation = 12.508353 kcal Electronic energy + Delta-G solvation = -31359.311273 eV Core-core repulsion = 27296.495647 eV Total energy + Delta-G solvation = -4062.815626 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -42.61471 -41.00571 -39.95904 -36.76944 -35.97705 -34.66418 -34.47550 -32.93065 -32.26057 -31.86128 -31.34172 -29.29505 -27.69163 -25.28762 -24.80610 -23.38838 -22.16278 -21.84477 -21.39110 -20.86172 -20.36194 -19.26837 -18.73704 -18.21547 -17.84904 -17.39545 -16.78869 -16.56908 -16.20011 -16.05161 -15.71607 -15.29113 -15.12780 -14.77106 -14.52595 -14.40615 -14.17479 -13.84772 -13.68917 -13.42599 -13.26768 -13.10080 -13.05550 -12.92806 -12.78552 -12.75448 -12.60289 -12.42044 -12.25935 -11.94352 -11.88741 -11.55591 -11.34406 -11.22911 -11.00116 -10.90466 -10.68839 -10.66030 -10.60574 -10.44629 -9.84100 -9.38713 -8.46399 -7.86948 -5.34809 1.45867 1.47066 1.55253 1.85738 2.08561 2.34191 2.40947 2.49430 3.30294 3.64279 3.71472 3.79287 3.94181 3.96423 4.01767 4.11090 4.27726 4.32405 4.34270 4.42767 4.53890 4.59892 4.66710 4.72822 4.75273 4.80873 4.84406 4.91218 4.94784 5.05558 5.08782 5.12938 5.15025 5.22028 5.36274 5.40428 5.44223 5.53923 5.60072 5.64369 5.69139 5.70580 5.75984 5.97279 6.01026 6.11204 6.37666 6.78914 7.11735 7.19767 7.49395 7.73338 7.77408 8.66309 9.23686 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.027773 B = 0.002488 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.934607 B =11249.284332 C =11485.277864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.172 3.828 3 H 0.054 0.946 4 C -0.140 4.140 5 C 0.499 3.501 6 O -0.579 6.579 7 N -0.713 5.713 8 C 0.018 3.982 9 C -0.073 4.073 10 H 0.068 0.932 11 C -0.111 4.111 12 C 0.140 3.860 13 H 0.062 0.938 14 C -0.146 4.146 15 C -0.161 4.161 16 C 0.181 3.819 17 H 0.034 0.966 18 C -0.108 4.108 19 N -0.602 5.602 20 C -0.249 4.249 21 H 0.059 0.941 22 C -0.037 4.037 23 N -0.918 5.918 24 Si 0.965 3.035 25 H -0.290 1.290 26 H -0.293 1.293 27 H -0.271 1.271 28 N -0.719 5.719 29 C 0.700 3.300 30 N -0.854 5.854 31 O -0.651 6.651 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.037 0.963 35 H 0.138 0.862 36 H 0.134 0.866 37 H 0.409 0.591 38 H 0.040 0.960 39 H 0.176 0.824 40 H 0.035 0.965 41 H 0.084 0.916 42 H 0.050 0.950 43 H 0.118 0.882 44 H 0.104 0.896 45 H 0.045 0.955 46 H 0.041 0.959 47 H 0.059 0.941 48 H 0.248 0.752 49 H 0.406 0.594 50 H 0.411 0.589 51 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.427 -6.077 11.740 23.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.066 3.934 3 H 0.073 0.927 4 C -0.180 4.180 5 C 0.287 3.713 6 O -0.458 6.458 7 N -0.366 5.366 8 C -0.102 4.102 9 C -0.091 4.091 10 H 0.086 0.914 11 C -0.150 4.150 12 C 0.034 3.966 13 H 0.080 0.920 14 C -0.184 4.184 15 C -0.199 4.199 16 C 0.075 3.925 17 H 0.052 0.948 18 C -0.147 4.147 19 N -0.324 5.324 20 C -0.379 4.379 21 H 0.077 0.923 22 C -0.234 4.234 23 N -0.562 5.562 24 Si 0.794 3.206 25 H -0.217 1.217 26 H -0.219 1.219 27 H -0.196 1.196 28 N -0.374 5.374 29 C 0.398 3.602 30 N -0.422 5.422 31 O -0.533 6.533 32 H 0.102 0.898 33 H 0.098 0.902 34 H 0.057 0.943 35 H 0.156 0.844 36 H 0.152 0.848 37 H 0.246 0.754 38 H 0.058 0.942 39 H 0.191 0.809 40 H 0.054 0.946 41 H 0.102 0.898 42 H 0.069 0.931 43 H 0.136 0.864 44 H 0.121 0.879 45 H 0.064 0.936 46 H 0.059 0.941 47 H 0.077 0.923 48 H 0.057 0.943 49 H 0.241 0.759 50 H 0.241 0.759 51 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -19.064 -4.795 12.051 23.058 hybrid contribution 1.585 -0.861 -0.819 1.981 sum -17.479 -5.657 11.232 21.533 Atomic orbital electron populations 1.22130 0.93291 1.03394 1.02472 1.20522 0.94270 0.96162 0.82471 0.92741 1.22099 0.90011 1.05675 1.00189 1.21239 0.91266 0.78026 0.80792 1.90757 1.71401 1.43655 1.39996 1.46210 1.07647 1.56150 1.26575 1.24669 0.79938 1.09464 0.96136 1.21095 0.95323 0.98683 0.94043 0.91358 1.22017 0.99275 0.97100 0.96614 1.21768 0.85644 0.94474 0.94761 0.92025 1.23560 0.97834 0.99835 0.97145 1.23728 0.96771 1.00032 0.99395 1.21106 0.94816 0.92093 0.84507 0.94756 1.21901 0.94385 0.98647 0.99809 1.45134 1.01244 1.80134 1.05900 1.19051 1.08860 1.11615 0.98369 0.92298 1.25939 1.01709 0.95564 1.00235 1.70047 1.27026 1.19421 1.39734 0.85316 0.78689 0.76555 0.80071 1.21700 1.21905 1.19562 1.44864 1.70626 1.13671 1.08236 1.16215 0.77721 0.84430 0.81839 1.42794 1.72514 1.15539 1.11371 1.90905 1.59919 1.16828 1.85663 0.89754 0.90156 0.94330 0.84428 0.84816 0.75437 0.94213 0.80885 0.94633 0.89817 0.93103 0.86431 0.87888 0.93589 0.94063 0.92252 0.94304 0.75868 0.75863 0.75107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.48 71.98 0.68 -1.28 16 2 C 0.17 2.96 2.13 44.99 0.10 3.06 16 3 H 0.05 1.44 7.39 -2.38 -0.02 1.42 16 4 C -0.14 -1.54 5.24 29.85 0.16 -1.38 16 5 C 0.50 10.37 7.46 87.65 0.65 11.02 16 6 O -0.58 -17.94 15.35 -3.04 -0.05 -17.99 16 7 N -0.71 -14.07 4.39 -463.07 -2.03 -16.10 16 8 C 0.02 0.51 2.66 86.38 0.23 0.74 16 9 C -0.07 -2.29 2.76 -10.70 -0.03 -2.32 16 10 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 11 C -0.11 -3.60 5.27 30.88 0.16 -3.44 16 12 C 0.14 5.39 4.28 45.43 0.19 5.59 16 13 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 14 C -0.15 -4.95 5.79 32.15 0.19 -4.76 16 15 C -0.16 -6.07 5.75 32.15 0.18 -5.89 16 16 C 0.18 8.30 3.12 45.40 0.14 8.45 16 17 H 0.03 1.84 7.66 -2.39 -0.02 1.82 16 18 C -0.11 -4.45 5.17 30.84 0.16 -4.29 16 19 N -0.60 -29.36 2.72 -637.38 -1.74 -31.09 16 20 C -0.25 -13.63 10.28 84.04 0.86 -12.77 16 21 H 0.06 3.20 7.83 -2.91 -0.02 3.18 16 22 C -0.04 -2.05 5.43 84.86 0.46 -1.59 16 23 N -0.92 -52.29 10.37 21.65 0.22 -52.07 16 24 Si 0.97 44.60 29.56 68.60 2.03 46.63 16 25 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 26 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 27 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 28 N -0.72 -12.60 4.22 -457.82 -1.93 -14.53 16 29 C 0.70 16.69 8.80 179.05 1.58 18.27 16 30 N -0.85 -12.51 8.88 -184.75 -1.64 -14.16 16 31 O -0.65 -22.41 16.84 -3.99 -0.07 -22.48 16 32 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.14 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.13 0.54 8.14 -2.39 -0.02 0.52 16 37 H 0.41 5.67 7.36 -92.71 -0.68 4.99 16 38 H 0.04 1.20 7.98 -2.38 -0.02 1.18 16 39 H 0.18 5.45 1.13 -108.25 -0.12 5.33 16 40 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.08 1.97 6.76 -2.39 -0.02 1.96 16 42 H 0.05 1.72 8.14 -2.39 -0.02 1.71 16 43 H 0.12 3.45 4.04 -2.39 -0.01 3.44 16 44 H 0.10 3.57 4.83 -2.39 -0.01 3.56 16 45 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 46 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 47 H 0.06 2.95 6.67 -2.39 -0.02 2.93 16 48 H 0.25 13.82 8.31 -92.71 -0.77 13.05 16 49 H 0.41 4.64 8.62 -92.71 -0.80 3.84 16 50 H 0.41 3.19 8.84 -92.71 -0.82 2.37 16 51 H 0.42 5.50 8.93 -92.71 -0.83 4.68 16 Total: -1.00 -79.65 383.22 -1.73 -81.38 By element: Atomic # 1 Polarization: 33.25 SS G_CDS: -2.25 Total: 31.00 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: 5.72 Total: 9.40 kcal Atomic # 7 Polarization: -120.83 SS G_CDS: -7.12 Total: -127.95 kcal Atomic # 8 Polarization: -40.35 SS G_CDS: -0.11 Total: -40.47 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -79.65 -1.73 -81.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501166396.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.891 kcal (2) G-P(sol) polarization free energy of solvation -79.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds