Wall clock time and date at job start Tue Mar 31 2020 21:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50699 * 109.47156 * 2 1 4 4 O 1.21279 * 120.00134 * 359.97438 * 3 2 1 5 5 N 1.34785 * 120.00056 * 179.97438 * 3 2 1 6 6 C 1.46495 * 120.00039 * 179.97438 * 5 3 2 7 7 H 1.09003 * 109.47121 * 325.00482 * 6 5 3 8 8 C 1.53005 * 109.46896 * 84.99949 * 6 5 3 9 9 C 1.50700 * 109.47454 * 204.99993 * 6 5 3 10 10 O 1.21280 * 119.99664 * 337.33188 * 9 6 5 11 11 N 1.34775 * 120.00082 * 157.32624 * 9 6 5 12 12 C 1.47081 * 120.87814 * 184.87450 * 11 9 6 13 13 C 1.53692 * 108.27891 * 128.75645 * 12 11 9 14 14 N 1.46899 * 109.25988 * 54.07666 * 13 12 11 15 15 C 1.46892 * 111.00302 * 172.60960 * 14 13 12 16 16 C 1.53947 * 113.74315 * 43.04578 * 15 14 13 17 17 N 1.47809 * 86.03707 * 222.08300 * 16 15 14 18 18 C 1.36937 * 134.45687 * 204.63801 * 17 16 15 19 19 H 1.08001 * 120.00256 * 179.86788 * 18 17 16 20 20 C 1.38809 * 120.00085 * 359.87160 * 18 17 16 21 21 N 1.31624 * 119.99804 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00292 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46838 * 60.00260 * 22 20 18 24 24 H 1.48488 * 109.47328 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47073 * 300.00368 * 22 20 18 26 26 C 1.47584 * 91.05305 * 24.55013 * 17 16 15 27 27 C 1.46896 * 111.26959 * 296.76270 * 14 13 12 28 28 C 1.47072 * 120.88184 * 5.15116 * 11 9 6 29 29 H 1.08999 * 109.47158 * 300.00816 * 1 2 3 30 30 H 1.08999 * 109.46760 * 60.00439 * 1 2 3 31 31 H 1.08995 * 109.46637 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47431 * 239.99652 * 2 1 3 33 33 H 1.09006 * 109.47105 * 119.99768 * 2 1 3 34 34 H 0.96997 * 119.99800 * 359.97438 * 5 3 2 35 35 H 1.08997 * 109.47241 * 302.71103 * 8 6 5 36 36 H 1.08995 * 109.46688 * 62.71641 * 8 6 5 37 37 H 1.09004 * 109.46665 * 182.71051 * 8 6 5 38 38 H 1.08996 * 109.62653 * 248.52426 * 12 11 9 39 39 H 1.08996 * 109.62955 * 9.09976 * 12 11 9 40 40 H 1.09003 * 109.64530 * 294.07671 * 13 12 11 41 41 H 1.08994 * 109.42573 * 173.94373 * 13 12 11 42 42 H 1.09007 * 112.94743 * 174.63872 * 15 14 13 43 43 H 1.08998 * 113.76427 * 336.34832 * 16 15 14 44 44 H 1.08998 * 113.76784 * 107.74448 * 16 15 14 45 45 H 0.96997 * 119.99946 * 179.97438 * 21 20 18 46 46 H 1.08997 * 113.77069 * 221.15648 * 26 17 16 47 47 H 1.09000 * 113.87321 * 89.76155 * 26 17 16 48 48 H 1.08998 * 109.49530 * 303.14239 * 27 14 13 49 49 H 1.09002 * 109.49765 * 183.06222 * 27 14 13 50 50 H 1.09004 * 109.63220 * 350.89248 * 28 11 9 51 51 H 1.09001 * 109.63339 * 111.47760 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2443 2.3426 -0.0005 5 7 3.3575 1.6671 0.0005 6 6 3.8458 3.0483 0.0000 7 1 3.1735 3.6711 -0.5901 8 6 3.8966 3.5718 1.4368 9 6 5.2276 3.0924 -0.5998 10 8 5.9163 2.0941 -0.6102 11 7 5.6981 4.2411 -1.1248 12 6 6.9992 4.2810 -1.8095 13 6 6.8017 4.9450 -3.1814 14 7 6.1562 6.2519 -2.9988 15 6 6.1071 6.9963 -4.2642 16 6 5.7033 6.1350 -5.4747 17 7 6.7668 6.8518 -6.2095 18 6 6.9982 7.1328 -7.5296 19 1 7.8761 7.6926 -7.8167 20 6 6.1044 6.6984 -8.4987 21 7 5.0348 6.0159 -8.1488 22 14 6.4197 7.0824 -10.2995 23 1 7.7153 6.4861 -10.7132 24 1 5.3256 6.5126 -11.1260 25 1 6.4687 8.5542 -10.4905 26 6 7.4775 7.1447 -4.9497 27 6 4.8136 6.1069 -2.4208 28 6 4.9268 5.4892 -1.0229 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0276 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8901 34 1 3.9878 0.9298 0.0013 35 1 2.9067 3.4951 1.8866 36 1 4.6053 2.9788 2.0146 37 1 4.2139 4.6146 1.4324 38 1 7.7070 4.8607 -1.2172 39 1 7.3740 3.2662 -1.9430 40 1 6.1721 4.3127 -3.8074 41 1 7.7710 5.0820 -3.6607 42 1 5.5520 7.9311 -4.1860 43 1 5.9009 5.0713 -5.3424 44 1 4.6982 6.3396 -5.8436 45 1 4.4100 5.7126 -8.8260 46 1 7.8864 8.1539 -4.9003 47 1 8.1981 6.3793 -4.6614 48 1 4.2116 5.4585 -3.0573 49 1 4.3410 7.0865 -2.3483 50 1 3.9307 5.2736 -0.6361 51 1 5.4392 6.1830 -0.3564 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001502842108.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:35:40 Heat of formation + Delta-G solvation = 3.091214 kcal Electronic energy + Delta-G solvation = -30442.275337 eV Core-core repulsion = 26379.051353 eV Total energy + Delta-G solvation = -4063.223984 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.87918 -39.78001 -38.89402 -36.75676 -35.32452 -33.88124 -33.16176 -31.89822 -31.52599 -30.45284 -28.13666 -26.42447 -25.45157 -24.91389 -24.27755 -23.33403 -22.56463 -21.22298 -20.55485 -19.53257 -18.50700 -17.85799 -16.91560 -16.87459 -16.52311 -16.01566 -15.65744 -15.41908 -15.20322 -14.96623 -14.81146 -14.36137 -14.27452 -14.01633 -13.84467 -13.69826 -13.22696 -12.87589 -12.59307 -12.55696 -12.48379 -12.26549 -12.06215 -12.03477 -11.90794 -11.84296 -11.60421 -11.45658 -11.31124 -10.97520 -10.86000 -10.70576 -10.66049 -10.21322 -10.14768 -9.99524 -9.89634 -9.52420 -9.42670 -8.88129 -8.78123 -7.88311 -6.88606 -5.79030 -3.12038 2.22988 2.41266 2.56305 3.07851 3.37809 3.41719 3.43271 4.02831 4.10813 4.42939 4.46766 4.70878 4.72623 4.77398 4.82795 4.85024 4.96323 5.09408 5.17885 5.19459 5.26847 5.30285 5.36392 5.42840 5.45086 5.47467 5.51549 5.62207 5.63870 5.68188 5.76543 5.83199 5.89886 5.92408 6.03724 6.07775 6.12709 6.30383 6.32926 6.52273 6.59798 6.95682 7.17079 7.18014 7.20824 7.32866 7.48974 7.57628 7.85761 7.94985 7.95149 9.01395 9.68171 10.56338 11.37533 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.013961 B = 0.002526 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.170969 B =11080.539562 C =12268.788152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.143 4.143 3 C 0.514 3.486 4 O -0.540 6.540 5 N -0.717 5.717 6 C 0.123 3.877 7 H 0.112 0.888 8 C -0.157 4.157 9 C 0.515 3.485 10 O -0.543 6.543 11 N -0.603 5.603 12 C 0.118 3.882 13 C 0.035 3.965 14 N -0.529 5.529 15 C 0.035 3.965 16 C 0.133 3.867 17 N -0.609 5.609 18 C -0.223 4.223 19 H 0.080 0.920 20 C -0.008 4.008 21 N -0.922 5.922 22 Si 0.913 3.087 23 H -0.285 1.285 24 H -0.290 1.290 25 H -0.284 1.284 26 C 0.125 3.875 27 C 0.040 3.960 28 C 0.107 3.893 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.410 0.590 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.092 0.908 40 H 0.048 0.952 41 H 0.094 0.906 42 H 0.101 0.899 43 H 0.028 0.972 44 H 0.069 0.931 45 H 0.254 0.746 46 H 0.046 0.954 47 H 0.038 0.962 48 H 0.042 0.958 49 H 0.088 0.912 50 H 0.087 0.913 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.036 -7.950 21.665 23.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.183 4.183 3 C 0.301 3.699 4 O -0.416 6.416 5 N -0.371 5.371 6 C 0.015 3.985 7 H 0.129 0.871 8 C -0.216 4.216 9 C 0.301 3.699 10 O -0.420 6.420 11 N -0.336 5.336 12 C -0.004 4.004 13 C -0.093 4.093 14 N -0.253 5.253 15 C -0.074 4.074 16 C 0.006 3.994 17 N -0.336 5.336 18 C -0.351 4.351 19 H 0.098 0.902 20 C -0.205 4.205 21 N -0.569 5.569 22 Si 0.743 3.257 23 H -0.212 1.212 24 H -0.216 1.216 25 H -0.210 1.210 26 C -0.002 4.002 27 C -0.089 4.089 28 C -0.016 4.016 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.113 0.887 33 H 0.112 0.888 34 H 0.247 0.753 35 H 0.093 0.907 36 H 0.083 0.917 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.111 0.889 40 H 0.066 0.934 41 H 0.113 0.887 42 H 0.119 0.881 43 H 0.046 0.954 44 H 0.087 0.913 45 H 0.064 0.936 46 H 0.064 0.936 47 H 0.055 0.945 48 H 0.060 0.940 49 H 0.106 0.894 50 H 0.106 0.894 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.024 -7.539 21.625 23.253 hybrid contribution 0.078 -0.638 -1.757 1.871 sum -3.946 -8.177 19.869 21.845 Atomic orbital electron populations 1.21535 0.92812 1.01679 1.03459 1.21630 0.98750 0.93360 1.04605 1.20853 0.81587 0.92179 0.75232 1.90709 1.55203 1.46485 1.49213 1.45874 1.07631 1.07863 1.75772 1.20799 0.93516 0.85607 0.98617 0.87054 1.22111 1.03634 1.01710 0.94122 1.20514 0.88262 0.83076 0.78004 1.90675 1.59156 1.34151 1.58063 1.48140 1.21188 1.08633 1.55646 1.21925 0.83734 1.02008 0.92726 1.22703 1.01161 0.90147 0.95322 1.62033 1.18409 1.17297 1.27572 1.24299 0.99469 0.97894 0.85695 1.22914 0.95620 0.93737 0.87105 1.45816 1.24182 1.62751 1.00815 1.18961 1.06411 1.29330 0.80358 0.90221 1.24796 0.97286 1.00318 0.98056 1.69813 1.13140 1.41613 1.32325 0.86191 0.77121 0.77910 0.84490 1.21168 1.21564 1.21019 1.22691 0.93322 0.98251 0.85912 1.22394 0.91188 1.01114 0.94228 1.22066 0.96187 0.85114 0.98280 0.91978 0.91825 0.92006 0.88667 0.88795 0.75309 0.90703 0.91663 0.90778 0.90620 0.88942 0.93414 0.88749 0.88107 0.95407 0.91267 0.93622 0.93597 0.94514 0.93970 0.89355 0.89448 0.89985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 9.20 37.16 0.34 -0.67 16 2 C -0.14 -1.00 6.42 -27.88 -0.18 -1.17 16 3 C 0.51 5.32 7.79 -10.98 -0.09 5.23 16 4 O -0.54 -7.41 15.64 5.56 0.09 -7.32 16 5 N -0.72 -7.03 5.05 -54.93 -0.28 -7.30 16 6 C 0.12 1.26 2.12 -69.08 -0.15 1.11 16 7 H 0.11 1.22 6.04 -51.93 -0.31 0.91 16 8 C -0.16 -1.29 9.27 37.16 0.34 -0.95 16 9 C 0.51 6.27 6.93 -10.99 -0.08 6.19 16 10 O -0.54 -7.98 15.44 5.56 0.09 -7.90 16 11 N -0.60 -7.04 3.00 -172.19 -0.52 -7.55 16 12 C 0.12 1.47 6.61 -3.37 -0.02 1.45 16 13 C 0.04 0.52 4.65 -3.47 -0.02 0.50 16 14 N -0.53 -7.72 4.77 -227.94 -1.09 -8.81 16 15 C 0.03 0.63 4.05 -69.92 -0.28 0.35 16 16 C 0.13 3.08 6.81 -2.84 -0.02 3.06 16 17 N -0.61 -15.53 3.70 -177.87 -0.66 -16.18 16 18 C -0.22 -6.26 10.70 -15.06 -0.16 -6.42 16 19 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 20 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 21 N -0.92 -27.51 11.39 55.49 0.63 -26.87 16 22 Si 0.91 22.23 29.55 -169.99 -5.02 17.20 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 25 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 26 C 0.12 2.50 8.40 -2.96 -0.02 2.47 16 27 C 0.04 0.49 5.55 -3.70 -0.02 0.47 16 28 C 0.11 1.05 5.87 -3.60 -0.02 1.02 16 29 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 30 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.41 3.66 7.76 -40.82 -0.32 3.35 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.51 7.11 -51.93 -0.37 0.14 16 38 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.09 1.21 7.10 -51.93 -0.37 0.85 16 40 H 0.05 0.82 6.38 -51.93 -0.33 0.49 16 41 H 0.09 1.45 5.81 -51.93 -0.30 1.14 16 42 H 0.10 1.81 8.11 -51.93 -0.42 1.39 16 43 H 0.03 0.67 5.76 -51.93 -0.30 0.37 16 44 H 0.07 1.81 7.17 -51.93 -0.37 1.44 16 45 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 46 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 47 H 0.04 0.71 5.93 -51.93 -0.31 0.40 16 48 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 49 H 0.09 0.99 8.09 -51.93 -0.42 0.57 16 50 H 0.09 0.71 5.11 -51.93 -0.27 0.45 16 51 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 395.73 15.07 5.96 5.96 Total: -1.00 -34.17 395.73 -9.54 -43.71 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -8.28 Total: 2.73 kcal Atomic # 6 Polarization: 12.80 SS G_CDS: -0.46 Total: 12.33 kcal Atomic # 7 Polarization: -64.82 SS G_CDS: -1.91 Total: -66.73 kcal Atomic # 8 Polarization: -15.39 SS G_CDS: 0.17 Total: -15.22 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.17 -9.54 -43.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502842108.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.802 kcal (2) G-P(sol) polarization free energy of solvation -34.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds