Wall clock time and date at job start Tue Mar 31 2020 21:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50699 * 109.47156 * 2 1 4 4 O 1.21279 * 120.00134 * 359.97438 * 3 2 1 5 5 N 1.34785 * 120.00056 * 179.97438 * 3 2 1 6 6 C 1.46495 * 120.00039 * 179.97438 * 5 3 2 7 7 H 1.09003 * 109.47121 * 325.00482 * 6 5 3 8 8 C 1.53005 * 109.46896 * 84.99949 * 6 5 3 9 9 C 1.50700 * 109.47454 * 204.99993 * 6 5 3 10 10 O 1.21280 * 119.99664 * 337.33188 * 9 6 5 11 11 N 1.34775 * 120.00082 * 157.32624 * 9 6 5 12 12 C 1.47081 * 120.87814 * 184.87450 * 11 9 6 13 13 C 1.53692 * 108.27891 * 128.75645 * 12 11 9 14 14 N 1.46899 * 109.25988 * 54.07666 * 13 12 11 15 15 C 1.46892 * 111.00302 * 172.60960 * 14 13 12 16 16 C 1.53947 * 113.74315 * 43.04578 * 15 14 13 17 17 N 1.47809 * 86.03707 * 222.08300 * 16 15 14 18 18 C 1.36937 * 134.45687 * 204.63801 * 17 16 15 19 19 H 1.08001 * 120.00256 * 179.86788 * 18 17 16 20 20 C 1.38809 * 120.00085 * 359.87160 * 18 17 16 21 21 N 1.31624 * 119.99804 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00292 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46838 * 60.00260 * 22 20 18 24 24 H 1.48488 * 109.47328 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47073 * 300.00368 * 22 20 18 26 26 C 1.47584 * 91.05305 * 24.55013 * 17 16 15 27 27 C 1.46896 * 111.26959 * 296.76270 * 14 13 12 28 28 C 1.47072 * 120.88184 * 5.15116 * 11 9 6 29 29 H 1.08999 * 109.47158 * 300.00816 * 1 2 3 30 30 H 1.08999 * 109.46760 * 60.00439 * 1 2 3 31 31 H 1.08995 * 109.46637 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47431 * 239.99652 * 2 1 3 33 33 H 1.09006 * 109.47105 * 119.99768 * 2 1 3 34 34 H 0.96997 * 119.99800 * 359.97438 * 5 3 2 35 35 H 1.08997 * 109.47241 * 302.71103 * 8 6 5 36 36 H 1.08995 * 109.46688 * 62.71641 * 8 6 5 37 37 H 1.09004 * 109.46665 * 182.71051 * 8 6 5 38 38 H 1.08996 * 109.62653 * 248.52426 * 12 11 9 39 39 H 1.08996 * 109.62955 * 9.09976 * 12 11 9 40 40 H 1.09003 * 109.64530 * 294.07671 * 13 12 11 41 41 H 1.08994 * 109.42573 * 173.94373 * 13 12 11 42 42 H 1.09007 * 112.94743 * 174.63872 * 15 14 13 43 43 H 1.08998 * 113.76427 * 336.34832 * 16 15 14 44 44 H 1.08998 * 113.76784 * 107.74448 * 16 15 14 45 45 H 0.96997 * 119.99946 * 179.97438 * 21 20 18 46 46 H 1.08997 * 113.77069 * 221.15648 * 26 17 16 47 47 H 1.09000 * 113.87321 * 89.76155 * 26 17 16 48 48 H 1.08998 * 109.49530 * 303.14239 * 27 14 13 49 49 H 1.09002 * 109.49765 * 183.06222 * 27 14 13 50 50 H 1.09004 * 109.63220 * 350.89248 * 28 11 9 51 51 H 1.09001 * 109.63339 * 111.47760 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2443 2.3426 -0.0005 5 7 3.3575 1.6671 0.0005 6 6 3.8458 3.0483 0.0000 7 1 3.1735 3.6711 -0.5901 8 6 3.8966 3.5718 1.4368 9 6 5.2276 3.0924 -0.5998 10 8 5.9163 2.0941 -0.6102 11 7 5.6981 4.2411 -1.1248 12 6 6.9992 4.2810 -1.8095 13 6 6.8017 4.9450 -3.1814 14 7 6.1562 6.2519 -2.9988 15 6 6.1071 6.9963 -4.2642 16 6 5.7033 6.1350 -5.4747 17 7 6.7668 6.8518 -6.2095 18 6 6.9982 7.1328 -7.5296 19 1 7.8761 7.6926 -7.8167 20 6 6.1044 6.6984 -8.4987 21 7 5.0348 6.0159 -8.1488 22 14 6.4197 7.0824 -10.2995 23 1 7.7153 6.4861 -10.7132 24 1 5.3256 6.5126 -11.1260 25 1 6.4687 8.5542 -10.4905 26 6 7.4775 7.1447 -4.9497 27 6 4.8136 6.1069 -2.4208 28 6 4.9268 5.4892 -1.0229 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0276 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8901 34 1 3.9878 0.9298 0.0013 35 1 2.9067 3.4951 1.8866 36 1 4.6053 2.9788 2.0146 37 1 4.2139 4.6146 1.4324 38 1 7.7070 4.8607 -1.2172 39 1 7.3740 3.2662 -1.9430 40 1 6.1721 4.3127 -3.8074 41 1 7.7710 5.0820 -3.6607 42 1 5.5520 7.9311 -4.1860 43 1 5.9009 5.0713 -5.3424 44 1 4.6982 6.3396 -5.8436 45 1 4.4100 5.7126 -8.8260 46 1 7.8864 8.1539 -4.9003 47 1 8.1981 6.3793 -4.6614 48 1 4.2116 5.4585 -3.0573 49 1 4.3410 7.0865 -2.3483 50 1 3.9307 5.2736 -0.6361 51 1 5.4392 6.1830 -0.3564 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001502842108.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:35:38 Heat of formation + Delta-G solvation = -22.527806 kcal Electronic energy + Delta-G solvation = -30443.386261 eV Core-core repulsion = 26379.051353 eV Total energy + Delta-G solvation = -4064.334908 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.84634 -40.86992 -40.14172 -38.05349 -36.18682 -35.27187 -33.91551 -33.73328 -32.48422 -31.32747 -29.75534 -27.87139 -26.66932 -26.24167 -25.23269 -24.57648 -23.96777 -22.37948 -21.37223 -20.71021 -19.79497 -18.80125 -18.76402 -17.84367 -17.55554 -16.99642 -16.85528 -16.75638 -16.43201 -16.16079 -16.09942 -15.66428 -15.52100 -15.14148 -14.85782 -14.57300 -14.36778 -13.96854 -13.88624 -13.59238 -13.51396 -13.33558 -13.24069 -13.18890 -13.07955 -12.81845 -12.77705 -12.64139 -12.62597 -12.36735 -12.23947 -12.03374 -12.01540 -11.88767 -11.80894 -11.41362 -11.01966 -10.92448 -10.83876 -10.26677 -9.87766 -9.29414 -8.89141 -7.93675 -5.28233 1.30358 1.42239 1.45920 1.52049 1.58807 1.69268 2.27376 2.42661 2.80623 3.21342 3.26051 3.45843 3.72864 3.80060 3.85328 3.95885 3.97898 4.00835 4.09717 4.21673 4.21748 4.26977 4.33765 4.43411 4.49484 4.58244 4.60350 4.68467 4.72566 4.76609 4.80208 4.86299 4.91953 4.96410 4.99586 5.06034 5.06934 5.13466 5.19424 5.23585 5.30370 5.36744 5.41098 5.45351 5.87364 5.99862 6.10771 6.26204 6.44190 6.86969 6.89942 7.16373 7.57050 8.51974 9.22120 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.013961 B = 0.002526 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.170969 B =11080.539562 C =12268.788152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.139 4.139 3 C 0.510 3.490 4 O -0.578 6.578 5 N -0.715 5.715 6 C 0.124 3.876 7 H 0.104 0.896 8 C -0.149 4.149 9 C 0.514 3.486 10 O -0.570 6.570 11 N -0.605 5.605 12 C 0.128 3.872 13 C 0.041 3.959 14 N -0.512 5.512 15 C 0.067 3.933 16 C 0.134 3.866 17 N -0.641 5.641 18 C -0.233 4.233 19 H 0.086 0.914 20 C -0.070 4.070 21 N -0.956 5.956 22 Si 0.980 3.020 23 H -0.277 1.277 24 H -0.296 1.296 25 H -0.273 1.273 26 C 0.126 3.874 27 C 0.035 3.965 28 C 0.112 3.888 29 H 0.052 0.948 30 H 0.043 0.957 31 H 0.084 0.916 32 H 0.109 0.891 33 H 0.121 0.879 34 H 0.415 0.585 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.084 0.916 40 H 0.015 0.985 41 H 0.088 0.912 42 H 0.110 0.890 43 H 0.013 0.987 44 H 0.030 0.970 45 H 0.247 0.753 46 H 0.061 0.939 47 H 0.051 0.949 48 H 0.017 0.983 49 H 0.108 0.892 50 H 0.108 0.892 51 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.219 -7.491 23.614 24.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.179 4.179 3 C 0.299 3.701 4 O -0.458 6.458 5 N -0.369 5.369 6 C 0.015 3.985 7 H 0.122 0.878 8 C -0.207 4.207 9 C 0.302 3.698 10 O -0.450 6.450 11 N -0.338 5.338 12 C 0.005 3.995 13 C -0.088 4.088 14 N -0.236 5.236 15 C -0.042 4.042 16 C 0.006 3.994 17 N -0.368 5.368 18 C -0.362 4.362 19 H 0.104 0.896 20 C -0.263 4.263 21 N -0.605 5.605 22 Si 0.808 3.192 23 H -0.203 1.203 24 H -0.222 1.222 25 H -0.198 1.198 26 C 0.002 3.998 27 C -0.093 4.093 28 C -0.010 4.010 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.103 0.897 32 H 0.127 0.873 33 H 0.139 0.861 34 H 0.253 0.747 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.110 0.890 38 H 0.115 0.885 39 H 0.102 0.898 40 H 0.034 0.966 41 H 0.106 0.894 42 H 0.128 0.872 43 H 0.030 0.970 44 H 0.049 0.951 45 H 0.056 0.944 46 H 0.079 0.921 47 H 0.068 0.932 48 H 0.036 0.964 49 H 0.126 0.874 50 H 0.126 0.874 51 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -3.171 -7.066 23.618 24.856 hybrid contribution -0.150 -0.807 -2.331 2.471 sum -3.321 -7.873 21.288 22.939 Atomic orbital electron populations 1.21537 0.93222 1.02685 1.02005 1.21707 0.98301 0.91303 1.06554 1.21491 0.81265 0.93231 0.74157 1.90689 1.56044 1.47923 1.51142 1.45929 1.07733 1.07949 1.75281 1.20829 0.91896 0.86008 0.99718 0.87786 1.22068 1.03571 1.02741 0.92358 1.20829 0.88670 0.82638 0.77622 1.90661 1.60019 1.35067 1.59262 1.48233 1.21051 1.09292 1.55183 1.21783 0.84629 1.01535 0.91535 1.22618 1.00053 0.89684 0.96449 1.62094 1.19767 1.16943 1.24796 1.23847 0.97650 0.97209 0.85492 1.22813 0.93303 0.93650 0.89599 1.46230 1.25933 1.63129 1.01490 1.19404 1.06236 1.28555 0.81990 0.89590 1.25676 0.97342 1.00891 1.02392 1.70028 1.14151 1.43257 1.33096 0.85122 0.76791 0.78081 0.79187 1.20335 1.22228 1.19832 1.22846 0.94215 0.99271 0.83512 1.22562 0.89465 1.02065 0.95222 1.22200 0.97541 0.84497 0.96735 0.92911 0.93826 0.89714 0.87257 0.86063 0.74725 0.91020 0.91419 0.88956 0.88475 0.89793 0.96635 0.89365 0.87231 0.96984 0.95108 0.94445 0.92080 0.93177 0.96446 0.87377 0.87446 0.87351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 9.20 71.98 0.66 -1.23 16 2 C -0.14 -1.72 6.42 29.85 0.19 -1.53 16 3 C 0.51 10.21 7.79 87.66 0.68 10.89 16 4 O -0.58 -15.90 15.64 -3.03 -0.05 -15.95 16 5 N -0.71 -13.37 5.05 -446.09 -2.25 -15.62 16 6 C 0.12 2.38 2.12 44.25 0.09 2.48 16 7 H 0.10 2.18 6.04 -2.39 -0.01 2.17 16 8 C -0.15 -2.13 9.27 71.98 0.67 -1.46 16 9 C 0.51 11.90 6.93 87.66 0.61 12.51 16 10 O -0.57 -16.33 15.44 -3.03 -0.05 -16.37 16 11 N -0.61 -13.08 3.00 -817.07 -2.45 -15.54 16 12 C 0.13 2.99 6.61 86.50 0.57 3.56 16 13 C 0.04 1.18 4.65 86.54 0.40 1.58 16 14 N -0.51 -14.25 4.77 -875.07 -4.17 -18.42 16 15 C 0.07 2.40 4.05 46.67 0.19 2.59 16 16 C 0.13 6.40 6.81 86.44 0.59 6.99 16 17 N -0.64 -33.10 3.70 -716.65 -2.65 -35.76 16 18 C -0.23 -13.24 10.70 84.03 0.90 -12.35 16 19 H 0.09 4.62 7.83 -2.91 -0.02 4.60 16 20 C -0.07 -4.08 5.50 84.86 0.47 -3.62 16 21 N -0.96 -59.14 11.39 21.65 0.25 -58.90 16 22 Si 0.98 46.36 29.55 68.60 2.03 48.38 16 23 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 24 H -0.30 -14.15 7.11 99.48 0.71 -13.45 16 25 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 26 C 0.13 4.94 8.40 86.49 0.73 5.67 16 27 C 0.04 0.83 5.55 86.39 0.48 1.31 16 28 C 0.11 1.90 5.87 86.35 0.51 2.41 16 29 H 0.05 0.82 8.10 -2.39 -0.02 0.80 16 30 H 0.04 0.77 8.10 -2.39 -0.02 0.75 16 31 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.12 0.86 8.14 -2.38 -0.02 0.84 16 34 H 0.42 6.98 7.76 -92.71 -0.72 6.26 16 35 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.07 0.95 8.14 -2.39 -0.02 0.94 16 37 H 0.09 0.97 7.11 -2.38 -0.02 0.95 16 38 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.08 2.15 7.10 -2.39 -0.02 2.14 16 40 H 0.02 0.55 6.38 -2.39 -0.02 0.54 16 41 H 0.09 2.66 5.81 -2.39 -0.01 2.65 16 42 H 0.11 3.78 8.11 -2.38 -0.02 3.76 16 43 H 0.01 0.63 5.76 -2.39 -0.01 0.62 16 44 H 0.03 1.69 7.17 -2.39 -0.02 1.67 16 45 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 46 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 47 H 0.05 1.87 5.93 -2.39 -0.01 1.85 16 48 H 0.02 0.50 8.14 -2.39 -0.02 0.48 16 49 H 0.11 2.14 8.09 -2.39 -0.02 2.13 16 50 H 0.11 1.45 5.11 -2.38 -0.01 1.44 16 51 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -76.83 395.73 -1.39 -78.22 By element: Atomic # 1 Polarization: 19.93 SS G_CDS: 0.22 Total: 20.15 kcal Atomic # 6 Polarization: 22.07 SS G_CDS: 7.74 Total: 29.80 kcal Atomic # 7 Polarization: -132.95 SS G_CDS: -11.28 Total: -144.23 kcal Atomic # 8 Polarization: -32.23 SS G_CDS: -0.09 Total: -32.32 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.38 kcal Total: -76.83 -1.39 -78.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502842108.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.696 kcal (2) G-P(sol) polarization free energy of solvation -76.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds