Wall clock time and date at job start Tue Mar 31 2020 21:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.58387 * 2 1 4 4 C 1.53184 * 109.70315 * 120.35579 * 2 1 3 5 5 C 1.53044 * 109.31100 * 174.48857 * 4 2 1 6 6 H 1.09002 * 109.46283 * 178.61087 * 5 4 2 7 7 N 1.46503 * 109.45662 * 58.66010 * 5 4 2 8 8 C 1.34772 * 120.00507 * 154.99755 * 7 5 4 9 9 O 1.21288 * 119.99368 * 0.02562 * 8 7 5 10 10 C 1.50695 * 120.00474 * 179.97438 * 8 7 5 11 11 N 1.46504 * 109.47270 * 180.02562 * 10 8 7 12 12 C 1.34775 * 120.00110 * 180.02562 * 11 10 8 13 13 O 1.21592 * 120.00002 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99950 * 179.97438 * 12 11 10 15 15 C 1.47019 * 125.65184 * 359.69618 * 14 12 11 16 16 C 1.54309 * 107.27890 * 180.96870 * 15 14 12 17 17 C 1.55157 * 102.86426 * 22.51983 * 16 15 14 18 18 C 1.47425 * 125.64516 * 179.97438 * 14 12 11 19 19 C 1.53034 * 109.54168 * 298.64183 * 5 4 2 20 20 C 1.52762 * 109.38561 * 61.23333 * 19 5 4 21 21 N 1.46921 * 109.58293 * 239.71829 * 2 1 3 22 22 C 1.36941 * 120.63451 * 6.43865 * 21 2 1 23 23 H 1.08001 * 119.99853 * 330.22113 * 22 21 2 24 24 C 1.38812 * 120.00177 * 150.22148 * 22 21 2 25 25 N 1.31621 * 119.99722 * 344.65139 * 24 22 21 26 26 Si 1.86797 * 120.00136 * 164.65173 * 24 22 21 27 27 H 1.48497 * 109.47343 * 89.99726 * 26 24 22 28 28 H 1.48499 * 109.47138 * 210.00291 * 26 24 22 29 29 H 1.48506 * 109.47011 * 329.99973 * 26 24 22 30 30 H 1.09003 * 109.46847 * 180.28266 * 1 2 3 31 31 H 1.09001 * 109.46810 * 300.27912 * 1 2 3 32 32 H 1.08991 * 109.47380 * 60.28077 * 1 2 3 33 33 H 1.08997 * 109.50280 * 294.44212 * 4 2 1 34 34 H 1.08999 * 109.49936 * 54.51101 * 4 2 1 35 35 H 0.97009 * 119.99768 * 334.99759 * 7 5 4 36 36 H 1.09003 * 109.47206 * 300.00144 * 10 8 7 37 37 H 1.09002 * 109.47235 * 60.00127 * 10 8 7 38 38 H 0.96995 * 119.99870 * 359.97438 * 11 10 8 39 39 H 1.09001 * 109.87872 * 300.51262 * 15 14 12 40 40 H 1.09007 * 109.88048 * 61.67081 * 15 14 12 41 41 H 1.09006 * 110.92255 * 264.10996 * 16 15 14 42 42 H 1.09001 * 110.59120 * 140.78655 * 16 15 14 43 43 H 1.09002 * 111.00394 * 206.23058 * 17 16 15 44 44 H 1.09000 * 111.03333 * 82.39439 * 17 16 15 45 45 H 1.09000 * 110.36787 * 274.67185 * 18 14 12 46 46 H 1.09000 * 110.36612 * 37.00045 * 18 14 12 47 47 H 1.09002 * 109.49772 * 181.31432 * 19 5 4 48 48 H 1.09004 * 109.49746 * 301.40895 * 19 5 4 49 49 H 1.08998 * 109.51003 * 185.70797 * 20 19 5 50 50 H 1.09002 * 109.42900 * 65.42974 * 20 19 5 51 51 H 0.97006 * 119.99968 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0465 -0.7288 1.2444 5 6 3.5706 -0.8444 1.1672 6 1 3.9431 -1.3408 2.0633 7 7 4.1573 0.4947 1.0720 8 6 5.4214 0.7078 1.4879 9 8 6.0735 -0.2093 1.9406 10 6 6.0251 2.0850 1.3893 11 7 7.3975 2.0544 1.9012 12 6 8.1379 3.1805 1.9120 13 8 7.6668 4.2219 1.4974 14 7 9.4003 3.1525 2.3834 15 6 10.0889 1.9691 2.9190 16 6 11.4983 2.4185 3.3579 17 6 11.3222 3.9446 3.5754 18 6 10.3173 4.3047 2.4525 19 6 3.9602 -1.6606 -0.0672 20 6 3.4647 -0.9473 -1.3239 21 7 2.0225 -0.6980 -1.1954 22 6 1.1532 -1.1133 -2.1686 23 1 0.1400 -1.3820 -1.9087 24 6 1.5744 -1.1889 -3.4891 25 7 2.6853 -0.5888 -3.8609 26 14 0.5646 -2.1421 -4.7385 27 1 -0.4291 -1.2354 -5.3674 28 1 1.4632 -2.6935 -5.7842 29 1 -0.1433 -3.2556 -4.0568 30 1 -0.3633 -1.0277 0.0051 31 1 -0.3633 0.5182 0.8875 32 1 -0.3634 0.5094 -0.8924 33 1 1.7690 -0.1673 2.1364 34 1 1.6076 -1.7255 1.2908 35 1 3.6359 1.2280 0.7095 36 1 6.0335 2.4044 0.3472 37 1 5.4326 2.7845 1.9790 38 1 7.7730 1.2239 2.2330 39 1 9.5397 1.5765 3.7748 40 1 10.1694 1.2053 2.1455 41 1 12.2308 2.2226 2.5748 42 1 11.7853 1.9270 4.2875 43 1 12.2670 4.4705 3.4375 44 1 10.9010 4.1536 4.5588 45 1 10.8383 4.4324 1.5036 46 1 9.7691 5.2109 2.7103 47 1 5.0447 -1.7623 -0.1087 48 1 3.5037 -2.6488 -0.0089 49 1 3.6509 -1.5744 -2.1957 50 1 3.9911 0.0008 -1.4340 51 1 2.9794 -0.6413 -4.7838 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001502923909.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:40:21 Heat of formation + Delta-G solvation = -41.414464 kcal Electronic energy + Delta-G solvation = -30226.194471 eV Core-core repulsion = 26161.040576 eV Total energy + Delta-G solvation = -4065.153895 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.53843 -39.76275 -37.99123 -37.47381 -34.61193 -34.22287 -32.40335 -31.94991 -31.32347 -29.82881 -29.33599 -27.43917 -26.37164 -24.95453 -23.67478 -22.11540 -21.57025 -20.96926 -20.56859 -20.13350 -18.71547 -18.64527 -16.93889 -16.56732 -16.48589 -16.09895 -15.64296 -15.40430 -15.14759 -14.71817 -14.35238 -14.08061 -13.91783 -13.78101 -13.58486 -13.44485 -13.23987 -13.14664 -12.86444 -12.71926 -12.51140 -12.22940 -11.88152 -11.73208 -11.58750 -11.46576 -11.24134 -11.15175 -11.03211 -10.70276 -10.66621 -10.45148 -10.33242 -10.18493 -10.11663 -9.77744 -9.72014 -9.33825 -9.30871 -8.76595 -8.68190 -8.48097 -6.64869 -5.80071 -3.24500 2.33041 2.70378 3.08017 3.35213 3.36076 3.43461 3.44687 3.86790 4.20412 4.28971 4.46878 4.52533 4.78448 4.89484 5.01124 5.24098 5.27946 5.30110 5.33626 5.34131 5.35686 5.40719 5.46382 5.50381 5.57768 5.59447 5.62723 5.76560 5.94211 5.98581 6.06692 6.18260 6.26773 6.27835 6.32817 6.41661 6.52326 6.58059 6.70730 6.85354 6.90963 6.98040 7.02597 7.34255 7.64392 7.68939 7.80486 7.81490 8.32101 8.44375 8.45639 9.19791 9.83272 10.39916 11.28337 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.019438 B = 0.002264 C = 0.002186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.136153 B =12364.012729 C =12805.524520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.167 3.833 3 H 0.021 0.979 4 C -0.139 4.139 5 C 0.155 3.845 6 H 0.073 0.927 7 N -0.705 5.705 8 C 0.510 3.490 9 O -0.550 6.550 10 C 0.118 3.882 11 N -0.730 5.730 12 C 0.725 3.275 13 O -0.590 6.590 14 N -0.638 5.638 15 C 0.096 3.904 16 C -0.130 4.130 17 C -0.135 4.135 18 C 0.124 3.876 19 C -0.154 4.154 20 C 0.176 3.824 21 N -0.586 5.586 22 C -0.252 4.252 23 H 0.069 0.931 24 C 0.004 3.996 25 N -0.901 5.901 26 Si 0.900 3.100 27 H -0.287 1.287 28 H -0.290 1.290 29 H -0.280 1.280 30 H 0.054 0.946 31 H 0.038 0.962 32 H 0.062 0.938 33 H 0.056 0.944 34 H 0.075 0.925 35 H 0.405 0.595 36 H 0.100 0.900 37 H 0.096 0.904 38 H 0.407 0.593 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.078 0.922 42 H 0.082 0.918 43 H 0.085 0.915 44 H 0.076 0.924 45 H 0.066 0.934 46 H 0.079 0.921 47 H 0.053 0.947 48 H 0.064 0.936 49 H 0.084 0.916 50 H 0.018 0.982 51 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.517 5.631 15.974 21.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.060 3.940 3 H 0.038 0.962 4 C -0.179 4.179 5 C 0.051 3.949 6 H 0.091 0.909 7 N -0.357 5.357 8 C 0.295 3.705 9 O -0.429 6.429 10 C -0.010 4.010 11 N -0.388 5.388 12 C 0.426 3.574 13 O -0.468 6.468 14 N -0.377 5.377 15 C -0.027 4.027 16 C -0.168 4.168 17 C -0.173 4.173 18 C 0.001 3.999 19 C -0.194 4.194 20 C 0.050 3.950 21 N -0.310 5.310 22 C -0.381 4.381 23 H 0.086 0.914 24 C -0.195 4.195 25 N -0.546 5.546 26 Si 0.730 3.270 27 H -0.214 1.214 28 H -0.217 1.217 29 H -0.205 1.205 30 H 0.073 0.927 31 H 0.057 0.943 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.094 0.906 35 H 0.241 0.759 36 H 0.118 0.882 37 H 0.114 0.886 38 H 0.245 0.755 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.097 0.903 42 H 0.101 0.899 43 H 0.103 0.897 44 H 0.095 0.905 45 H 0.084 0.916 46 H 0.097 0.903 47 H 0.072 0.928 48 H 0.082 0.918 49 H 0.102 0.898 50 H 0.036 0.964 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 13.566 5.724 15.761 21.569 hybrid contribution -0.510 -0.628 -0.850 1.174 sum 13.056 5.096 14.911 20.464 Atomic orbital electron populations 1.21801 0.95799 1.01499 1.00341 1.20390 0.93242 0.93142 0.87183 0.96189 1.22370 0.93777 1.02432 0.99304 1.20923 0.93146 0.81973 0.98834 0.90874 1.46058 1.13627 1.13055 1.62926 1.20371 0.82386 0.90023 0.77715 1.90650 1.60803 1.44724 1.46714 1.20922 0.82745 0.95244 1.02132 1.44719 1.13939 1.11467 1.68700 1.15286 0.79510 0.83823 0.78735 1.90942 1.71337 1.30476 1.54044 1.47514 1.11970 1.11501 1.66736 1.22037 0.93407 0.88555 0.98720 1.22606 0.95732 0.96129 1.02291 1.22817 0.99473 0.95963 0.99030 1.22081 0.90142 0.89191 0.98454 1.22490 0.99894 0.99506 0.97481 1.20603 0.83248 0.97122 0.94030 1.44106 1.02934 1.65014 1.18918 1.19127 0.95196 1.37744 0.86059 0.91354 1.25101 0.97851 0.99537 0.97031 1.70018 1.24056 1.43829 1.16656 0.86347 0.79414 0.79980 0.81303 1.21436 1.21659 1.20527 0.92710 0.94303 0.91872 0.92529 0.90594 0.75923 0.88203 0.88602 0.75527 0.91442 0.91341 0.90339 0.89906 0.89651 0.90533 0.91571 0.90300 0.92792 0.91756 0.89791 0.96409 0.93693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 7.96 37.16 0.30 -2.10 16 2 C 0.17 3.14 3.20 -67.60 -0.22 2.92 16 3 H 0.02 0.38 6.64 -51.93 -0.34 0.04 16 4 C -0.14 -2.20 5.08 -26.61 -0.14 -2.34 16 5 C 0.16 2.54 2.78 -67.89 -0.19 2.35 16 6 H 0.07 1.20 7.58 -51.93 -0.39 0.80 16 7 N -0.71 -10.57 4.27 -53.77 -0.23 -10.80 16 8 C 0.51 7.59 7.86 -10.99 -0.09 7.51 16 9 O -0.55 -9.47 15.33 5.55 0.09 -9.39 16 10 C 0.12 1.55 6.15 -5.19 -0.03 1.51 16 11 N -0.73 -9.57 5.49 -66.41 -0.36 -9.94 16 12 C 0.72 10.27 8.49 -86.92 -0.74 9.53 16 13 O -0.59 -10.38 16.60 5.28 0.09 -10.29 16 14 N -0.64 -6.93 3.33 -176.23 -0.59 -7.52 16 15 C 0.10 0.75 6.14 -3.07 -0.02 0.73 16 16 C -0.13 -0.69 6.95 -24.90 -0.17 -0.86 16 17 C -0.13 -0.74 7.08 -24.57 -0.17 -0.92 16 18 C 0.12 1.08 6.91 -2.52 -0.02 1.07 16 19 C -0.15 -2.92 5.75 -26.84 -0.15 -3.08 16 20 C 0.18 4.01 5.00 -3.93 -0.02 3.99 16 21 N -0.59 -13.57 2.99 -165.04 -0.49 -14.07 16 22 C -0.25 -6.50 8.57 -15.06 -0.13 -6.63 16 23 H 0.07 1.73 6.24 -52.49 -0.33 1.40 16 24 C 0.00 0.10 4.94 -17.43 -0.09 0.01 16 25 N -0.90 -25.57 11.24 55.49 0.62 -24.95 16 26 Si 0.90 21.29 29.58 -169.99 -5.03 16.26 16 27 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 28 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 29 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 30 H 0.05 0.98 7.43 -51.93 -0.39 0.59 16 31 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.06 1.21 7.63 -51.93 -0.40 0.81 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 35 H 0.40 5.77 6.87 -40.82 -0.28 5.49 16 36 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 37 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.41 5.08 6.42 -40.82 -0.26 4.82 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 46 H 0.08 0.76 8.03 -51.93 -0.42 0.34 16 47 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 48 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 49 H 0.08 2.21 6.16 -51.93 -0.32 1.89 16 50 H 0.02 0.43 7.74 -51.93 -0.40 0.03 16 51 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 396.05 15.07 5.97 5.97 Total: -1.00 -32.38 396.05 -10.39 -42.77 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: -8.58 Total: 8.24 kcal Atomic # 6 Polarization: 15.57 SS G_CDS: -1.87 Total: 13.70 kcal Atomic # 7 Polarization: -66.22 SS G_CDS: -1.05 Total: -67.27 kcal Atomic # 8 Polarization: -19.85 SS G_CDS: 0.17 Total: -19.68 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.03 Total: 16.26 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.38 -10.39 -42.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502923909.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.358 kcal (2) G-P(sol) polarization free energy of solvation -32.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds