Wall clock time and date at job start Tue Mar 31 2020 21:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.58387 * 2 1 4 4 C 1.53184 * 109.70315 * 120.35579 * 2 1 3 5 5 C 1.53044 * 109.31100 * 174.48857 * 4 2 1 6 6 H 1.09002 * 109.46283 * 178.61087 * 5 4 2 7 7 N 1.46503 * 109.45662 * 58.66010 * 5 4 2 8 8 C 1.34772 * 120.00507 * 154.99755 * 7 5 4 9 9 O 1.21288 * 119.99368 * 0.02562 * 8 7 5 10 10 C 1.50695 * 120.00474 * 179.97438 * 8 7 5 11 11 N 1.46504 * 109.47270 * 180.02562 * 10 8 7 12 12 C 1.34775 * 120.00110 * 180.02562 * 11 10 8 13 13 O 1.21592 * 120.00002 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99950 * 179.97438 * 12 11 10 15 15 C 1.47019 * 125.65184 * 359.69618 * 14 12 11 16 16 C 1.54309 * 107.27890 * 180.96870 * 15 14 12 17 17 C 1.55157 * 102.86426 * 22.51983 * 16 15 14 18 18 C 1.47425 * 125.64516 * 179.97438 * 14 12 11 19 19 C 1.53034 * 109.54168 * 298.64183 * 5 4 2 20 20 C 1.52762 * 109.38561 * 61.23333 * 19 5 4 21 21 N 1.46921 * 109.58293 * 239.71829 * 2 1 3 22 22 C 1.36941 * 120.63451 * 6.43865 * 21 2 1 23 23 H 1.08001 * 119.99853 * 330.22113 * 22 21 2 24 24 C 1.38812 * 120.00177 * 150.22148 * 22 21 2 25 25 N 1.31621 * 119.99722 * 344.65139 * 24 22 21 26 26 Si 1.86797 * 120.00136 * 164.65173 * 24 22 21 27 27 H 1.48497 * 109.47343 * 89.99726 * 26 24 22 28 28 H 1.48499 * 109.47138 * 210.00291 * 26 24 22 29 29 H 1.48506 * 109.47011 * 329.99973 * 26 24 22 30 30 H 1.09003 * 109.46847 * 180.28266 * 1 2 3 31 31 H 1.09001 * 109.46810 * 300.27912 * 1 2 3 32 32 H 1.08991 * 109.47380 * 60.28077 * 1 2 3 33 33 H 1.08997 * 109.50280 * 294.44212 * 4 2 1 34 34 H 1.08999 * 109.49936 * 54.51101 * 4 2 1 35 35 H 0.97009 * 119.99768 * 334.99759 * 7 5 4 36 36 H 1.09003 * 109.47206 * 300.00144 * 10 8 7 37 37 H 1.09002 * 109.47235 * 60.00127 * 10 8 7 38 38 H 0.96995 * 119.99870 * 359.97438 * 11 10 8 39 39 H 1.09001 * 109.87872 * 300.51262 * 15 14 12 40 40 H 1.09007 * 109.88048 * 61.67081 * 15 14 12 41 41 H 1.09006 * 110.92255 * 264.10996 * 16 15 14 42 42 H 1.09001 * 110.59120 * 140.78655 * 16 15 14 43 43 H 1.09002 * 111.00394 * 206.23058 * 17 16 15 44 44 H 1.09000 * 111.03333 * 82.39439 * 17 16 15 45 45 H 1.09000 * 110.36787 * 274.67185 * 18 14 12 46 46 H 1.09000 * 110.36612 * 37.00045 * 18 14 12 47 47 H 1.09002 * 109.49772 * 181.31432 * 19 5 4 48 48 H 1.09004 * 109.49746 * 301.40895 * 19 5 4 49 49 H 1.08998 * 109.51003 * 185.70797 * 20 19 5 50 50 H 1.09002 * 109.42900 * 65.42974 * 20 19 5 51 51 H 0.97006 * 119.99968 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0465 -0.7288 1.2444 5 6 3.5706 -0.8444 1.1672 6 1 3.9431 -1.3408 2.0633 7 7 4.1573 0.4947 1.0720 8 6 5.4214 0.7078 1.4879 9 8 6.0735 -0.2093 1.9406 10 6 6.0251 2.0850 1.3893 11 7 7.3975 2.0544 1.9012 12 6 8.1379 3.1805 1.9120 13 8 7.6668 4.2219 1.4974 14 7 9.4003 3.1525 2.3834 15 6 10.0889 1.9691 2.9190 16 6 11.4983 2.4185 3.3579 17 6 11.3222 3.9446 3.5754 18 6 10.3173 4.3047 2.4525 19 6 3.9602 -1.6606 -0.0672 20 6 3.4647 -0.9473 -1.3239 21 7 2.0225 -0.6980 -1.1954 22 6 1.1532 -1.1133 -2.1686 23 1 0.1400 -1.3820 -1.9087 24 6 1.5744 -1.1889 -3.4891 25 7 2.6853 -0.5888 -3.8609 26 14 0.5646 -2.1421 -4.7385 27 1 -0.4291 -1.2354 -5.3674 28 1 1.4632 -2.6935 -5.7842 29 1 -0.1433 -3.2556 -4.0568 30 1 -0.3633 -1.0277 0.0051 31 1 -0.3633 0.5182 0.8875 32 1 -0.3634 0.5094 -0.8924 33 1 1.7690 -0.1673 2.1364 34 1 1.6076 -1.7255 1.2908 35 1 3.6359 1.2280 0.7095 36 1 6.0335 2.4044 0.3472 37 1 5.4326 2.7845 1.9790 38 1 7.7730 1.2239 2.2330 39 1 9.5397 1.5765 3.7748 40 1 10.1694 1.2053 2.1455 41 1 12.2308 2.2226 2.5748 42 1 11.7853 1.9270 4.2875 43 1 12.2670 4.4705 3.4375 44 1 10.9010 4.1536 4.5588 45 1 10.8383 4.4324 1.5036 46 1 9.7691 5.2109 2.7103 47 1 5.0447 -1.7623 -0.1087 48 1 3.5037 -2.6488 -0.0089 49 1 3.6509 -1.5744 -2.1957 50 1 3.9911 0.0008 -1.4340 51 1 2.9794 -0.6413 -4.7838 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001502923909.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:40:19 Heat of formation + Delta-G solvation = -63.241685 kcal Electronic energy + Delta-G solvation = -30227.140970 eV Core-core repulsion = 26161.040576 eV Total energy + Delta-G solvation = -4066.100394 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.61510 -40.95166 -39.32322 -38.45398 -36.03258 -35.49597 -34.10308 -33.04756 -32.54385 -31.46280 -30.00214 -28.62720 -27.80985 -26.75002 -24.50605 -23.76612 -22.44131 -22.11171 -21.88529 -21.13360 -20.22699 -19.59745 -18.28184 -17.72547 -17.67351 -17.29151 -17.06716 -16.67429 -16.51184 -15.89547 -15.68147 -15.53370 -15.47799 -14.85175 -14.69415 -14.54923 -14.34839 -14.19463 -14.08686 -13.91340 -13.63391 -13.33568 -13.20792 -13.18990 -12.83272 -12.66035 -12.46504 -12.32168 -12.20943 -12.17349 -12.13588 -11.97744 -11.68642 -11.59448 -11.48678 -11.40066 -11.06066 -10.97552 -10.50018 -10.42348 -10.05169 -9.58281 -8.56692 -7.82053 -5.27179 1.36617 1.46138 1.48722 1.49099 1.56511 1.99986 2.21965 2.53492 2.95708 3.33811 3.56403 3.65836 3.68029 3.73099 3.97127 4.07185 4.09032 4.21413 4.29411 4.30190 4.32773 4.45544 4.48688 4.61971 4.63089 4.68931 4.81106 4.85832 4.92613 4.94835 4.98427 4.99621 5.03888 5.11889 5.13561 5.18452 5.21832 5.24696 5.36271 5.43722 5.54019 5.55819 5.59326 5.75021 5.78509 5.94471 6.45444 6.47140 6.82396 7.10124 7.20953 7.39951 7.93803 8.44516 9.24136 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.019438 B = 0.002264 C = 0.002186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.136153 B =12364.012729 C =12805.524520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.158 3.842 3 H 0.025 0.975 4 C -0.125 4.125 5 C 0.162 3.838 6 H 0.084 0.916 7 N -0.702 5.702 8 C 0.516 3.484 9 O -0.571 6.571 10 C 0.123 3.877 11 N -0.726 5.726 12 C 0.717 3.283 13 O -0.632 6.632 14 N -0.639 5.639 15 C 0.088 3.912 16 C -0.121 4.121 17 C -0.123 4.123 18 C 0.114 3.886 19 C -0.141 4.141 20 C 0.187 3.813 21 N -0.601 5.601 22 C -0.245 4.245 23 H 0.075 0.925 24 C -0.055 4.055 25 N -0.936 5.936 26 Si 0.957 3.043 27 H -0.287 1.287 28 H -0.300 1.300 29 H -0.270 1.270 30 H 0.049 0.951 31 H 0.076 0.924 32 H 0.039 0.961 33 H 0.091 0.909 34 H 0.076 0.924 35 H 0.409 0.591 36 H 0.095 0.905 37 H 0.112 0.888 38 H 0.411 0.589 39 H 0.072 0.928 40 H 0.067 0.933 41 H 0.086 0.914 42 H 0.103 0.897 43 H 0.108 0.892 44 H 0.079 0.921 45 H 0.067 0.933 46 H 0.064 0.936 47 H 0.048 0.952 48 H 0.063 0.937 49 H 0.042 0.958 50 H -0.001 1.001 51 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.703 5.466 18.545 23.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.052 3.948 3 H 0.043 0.957 4 C -0.164 4.164 5 C 0.058 3.942 6 H 0.102 0.898 7 N -0.353 5.353 8 C 0.302 3.698 9 O -0.451 6.451 10 C -0.005 4.005 11 N -0.385 5.385 12 C 0.419 3.581 13 O -0.513 6.513 14 N -0.377 5.377 15 C -0.034 4.034 16 C -0.159 4.159 17 C -0.161 4.161 18 C -0.009 4.009 19 C -0.182 4.182 20 C 0.061 3.939 21 N -0.326 5.326 22 C -0.375 4.375 23 H 0.092 0.908 24 C -0.250 4.250 25 N -0.583 5.583 26 Si 0.786 3.214 27 H -0.214 1.214 28 H -0.227 1.227 29 H -0.195 1.195 30 H 0.068 0.932 31 H 0.095 0.905 32 H 0.058 0.942 33 H 0.110 0.890 34 H 0.094 0.906 35 H 0.246 0.754 36 H 0.113 0.887 37 H 0.130 0.870 38 H 0.249 0.751 39 H 0.091 0.909 40 H 0.085 0.915 41 H 0.105 0.895 42 H 0.121 0.879 43 H 0.126 0.874 44 H 0.097 0.903 45 H 0.085 0.915 46 H 0.082 0.918 47 H 0.066 0.934 48 H 0.081 0.919 49 H 0.061 0.939 50 H 0.017 0.983 51 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 13.758 5.545 18.383 23.621 hybrid contribution -0.548 -0.555 -1.600 1.780 sum 13.210 4.990 16.783 21.933 Atomic orbital electron populations 1.21741 0.94622 1.01397 1.01079 1.20680 0.94326 0.93298 0.86465 0.95702 1.22237 0.92776 1.02560 0.98873 1.20805 0.93832 0.82176 0.97433 0.89814 1.45994 1.13797 1.12711 1.62848 1.20552 0.82049 0.90289 0.76921 1.90640 1.61247 1.45543 1.47708 1.20875 0.83070 0.94365 1.02186 1.44665 1.13877 1.11408 1.68515 1.15502 0.80497 0.83347 0.78799 1.90901 1.72570 1.31836 1.56023 1.47679 1.11128 1.13310 1.65533 1.22284 0.94857 0.87523 0.98767 1.22630 0.94008 0.95812 1.03467 1.22799 0.99325 0.96303 0.97650 1.22305 0.90375 0.88202 0.99990 1.22302 0.99298 0.99501 0.97051 1.20294 0.83567 0.95711 0.94297 1.44340 1.02618 1.65801 1.19801 1.19460 0.95573 1.35953 0.86532 0.90767 1.25783 0.99087 1.01154 0.98927 1.70173 1.25884 1.45938 1.16312 0.85426 0.77889 0.78942 0.79098 1.21379 1.22677 1.19508 0.93216 0.90485 0.94204 0.89016 0.90558 0.75384 0.88747 0.87029 0.75091 0.90932 0.91471 0.89498 0.87881 0.87398 0.90261 0.91455 0.91771 0.93362 0.91877 0.93909 0.98293 0.94618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.27 7.96 71.98 0.57 -3.70 16 2 C 0.16 5.62 3.20 44.98 0.14 5.77 16 3 H 0.03 0.89 6.64 -2.39 -0.02 0.88 16 4 C -0.13 -3.57 5.08 30.67 0.16 -3.42 16 5 C 0.16 4.97 2.78 45.02 0.13 5.09 16 6 H 0.08 2.50 7.58 -2.39 -0.02 2.48 16 7 N -0.70 -20.00 4.27 -442.41 -1.89 -21.89 16 8 C 0.52 14.80 7.86 87.66 0.69 15.49 16 9 O -0.57 -18.99 15.33 -3.05 -0.05 -19.04 16 10 C 0.12 3.17 6.15 85.63 0.53 3.70 16 11 N -0.73 -18.82 5.49 -482.29 -2.65 -21.47 16 12 C 0.72 20.39 8.49 179.05 1.52 21.91 16 13 O -0.63 -22.68 16.60 -4.01 -0.07 -22.75 16 14 N -0.64 -13.56 3.33 -829.73 -2.76 -16.32 16 15 C 0.09 1.25 6.14 86.72 0.53 1.78 16 16 C -0.12 -0.96 6.95 31.78 0.22 -0.74 16 17 C -0.12 -1.07 7.08 31.99 0.23 -0.84 16 18 C 0.11 1.91 6.91 86.86 0.60 2.51 16 19 C -0.14 -5.34 5.75 30.53 0.18 -5.16 16 20 C 0.19 8.74 5.00 86.22 0.43 9.17 16 21 N -0.60 -27.80 2.99 -676.07 -2.02 -29.82 16 22 C -0.24 -12.67 8.57 84.03 0.72 -11.95 16 23 H 0.07 3.70 6.24 -2.91 -0.02 3.69 16 24 C -0.05 -2.99 4.94 84.86 0.42 -2.57 16 25 N -0.94 -55.03 11.24 21.65 0.24 -54.79 16 26 Si 0.96 44.58 29.58 68.60 2.03 46.61 16 27 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 28 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 29 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 30 H 0.05 1.66 7.43 -2.39 -0.02 1.64 16 31 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.04 1.47 7.63 -2.39 -0.02 1.45 16 33 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.41 11.05 6.87 -92.70 -0.64 10.42 16 36 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 37 H 0.11 2.54 8.14 -2.39 -0.02 2.52 16 38 H 0.41 10.01 6.42 -92.71 -0.60 9.42 16 39 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 41 H 0.09 0.58 8.14 -2.38 -0.02 0.56 16 42 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 43 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 44 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 45 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 46 H 0.06 1.26 8.03 -2.39 -0.02 1.24 16 47 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 48 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 49 H 0.04 2.34 6.16 -2.39 -0.01 2.33 16 50 H 0.00 -0.05 7.74 -2.39 -0.02 -0.07 16 51 H 0.24 14.18 8.31 -92.70 -0.77 13.41 16 Total: -1.00 -72.00 396.05 -0.39 -72.39 By element: Atomic # 1 Polarization: 30.34 SS G_CDS: -0.29 Total: 30.05 kcal Atomic # 6 Polarization: 29.97 SS G_CDS: 7.06 Total: 37.03 kcal Atomic # 7 Polarization: -135.22 SS G_CDS: -9.07 Total: -144.29 kcal Atomic # 8 Polarization: -41.68 SS G_CDS: -0.11 Total: -41.79 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -72.00 -0.39 -72.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502923909.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.149 kcal (2) G-P(sol) polarization free energy of solvation -71.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds