Wall clock time and date at job start Tue Mar 31 2020 22:42:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46785 * 2 1 4 4 C 1.52996 * 109.47582 * 120.00203 * 2 1 3 5 5 C 1.50701 * 109.47103 * 295.00557 * 4 2 1 6 6 O 1.21279 * 120.00120 * 359.97438 * 5 4 2 7 7 N 1.34781 * 119.99923 * 179.97438 * 5 4 2 8 8 C 1.46493 * 120.00083 * 0.02562 * 7 5 4 9 9 C 1.46500 * 119.99837 * 179.97438 * 7 5 4 10 10 C 1.53006 * 109.47073 * 270.00153 * 9 7 5 11 11 H 1.09000 * 109.47351 * 305.00204 * 10 9 7 12 12 O 1.42903 * 109.47175 * 65.00242 * 10 9 7 13 13 C 1.53004 * 109.47038 * 185.00046 * 10 9 7 14 14 N 1.46496 * 109.47142 * 180.02562 * 13 10 9 15 15 C 1.46502 * 120.00019 * 89.99659 * 14 13 10 16 16 C 1.36938 * 119.99910 * 270.00473 * 14 13 10 17 17 H 1.07999 * 120.00472 * 23.18471 * 16 14 13 18 18 C 1.38819 * 119.99724 * 203.18626 * 16 14 13 19 19 N 1.31621 * 119.99722 * 13.71091 * 18 16 14 20 20 Si 1.86796 * 119.99991 * 193.70408 * 18 16 14 21 21 H 1.48500 * 109.47196 * 60.00398 * 20 18 16 22 22 H 1.48496 * 109.47091 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47295 * 300.00177 * 20 18 16 24 24 C 1.50697 * 109.47117 * 240.00512 * 2 1 3 25 25 C 1.39870 * 126.04151 * 299.68871 * 24 2 1 26 26 N 1.30838 * 108.20307 * 179.82127 * 25 24 2 27 27 N 1.40088 * 108.20642 * 0.43397 * 26 25 24 28 28 C 1.46497 * 126.03964 * 179.74190 * 27 26 25 29 29 C 1.34955 * 107.92319 * 359.72344 * 27 26 25 30 30 H 1.09003 * 109.46785 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47280 * 299.99117 * 1 2 3 32 32 H 1.08994 * 109.47610 * 60.00170 * 1 2 3 33 33 H 1.08998 * 109.47381 * 175.00277 * 4 2 1 34 34 H 1.09005 * 109.47050 * 55.00254 * 4 2 1 35 35 H 1.09003 * 109.47179 * 269.99916 * 8 7 5 36 36 H 1.09003 * 109.47267 * 29.99091 * 8 7 5 37 37 H 1.09001 * 109.47502 * 149.99564 * 8 7 5 38 38 H 1.09001 * 109.47407 * 29.99797 * 9 7 5 39 39 H 1.08995 * 109.46944 * 150.00411 * 9 7 5 40 40 H 0.96699 * 113.99918 * 59.99631 * 12 10 9 41 41 H 1.09000 * 109.47179 * 300.00263 * 13 10 9 42 42 H 1.08997 * 109.46781 * 59.99952 * 13 10 9 43 43 H 1.09005 * 109.46559 * 95.15871 * 15 14 13 44 44 H 1.09005 * 109.47254 * 215.15866 * 15 14 13 45 45 H 1.08999 * 109.47576 * 335.16330 * 15 14 13 46 46 H 0.97004 * 119.99530 * 180.02562 * 19 18 16 47 47 H 1.07998 * 125.89318 * 359.97438 * 25 24 2 48 48 H 1.08997 * 109.47216 * 269.97958 * 28 27 26 49 49 H 1.09003 * 109.46810 * 29.97833 * 28 27 26 50 50 H 1.08991 * 109.47311 * 149.97700 * 28 27 26 51 51 H 1.07999 * 126.12681 * 180.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.6413 0.0569 2.4766 6 8 1.0116 1.0872 2.3633 7 7 1.9846 -0.3921 3.7001 8 6 2.7457 -1.6363 3.8369 9 6 1.5974 0.3647 4.8933 10 6 2.6957 1.3732 5.2362 11 1 3.6473 0.8523 5.3417 12 8 2.7964 2.3419 4.1903 13 6 2.3505 2.0760 6.5507 14 7 3.4017 3.0421 6.8787 15 6 3.3034 4.4228 6.3988 16 6 4.4764 2.6546 7.6337 17 1 4.7589 1.6131 7.6765 18 6 5.2027 3.6005 8.3442 19 7 4.7156 4.8111 8.5162 20 14 6.8712 3.1551 9.0562 21 1 7.7860 2.7509 7.9585 22 1 7.4369 4.3312 9.7647 23 1 6.7170 2.0291 10.0121 24 6 2.0323 -0.7103 -1.2305 25 6 1.7785 -2.0424 -1.5730 26 7 2.3776 -2.2937 -2.7087 27 7 3.0409 -1.1305 -3.1204 28 6 3.8399 -0.9794 -4.3390 29 6 2.8135 -0.1736 -2.1964 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 3.1264 -0.7994 1.2055 34 1 1.6055 -1.7199 1.2950 35 1 2.0564 -2.4764 3.9221 36 1 3.3787 -1.7733 2.9601 37 1 3.3683 -1.5851 4.7301 38 1 0.6647 0.8948 4.7006 39 1 1.4597 -0.3208 5.7295 40 1 1.9840 2.8445 4.0403 41 1 1.3988 2.5970 6.4451 42 1 2.2737 1.3372 7.3483 43 1 2.8545 5.0453 7.1729 44 1 4.2996 4.7976 6.1635 45 1 2.6829 4.4529 5.5031 46 1 5.2234 5.4721 9.0123 47 1 1.1877 -2.7419 -1.0002 48 1 4.8774 -1.2384 -4.1276 49 1 3.4507 -1.6410 -5.1129 50 1 3.7861 0.0533 -4.6830 51 1 3.1875 0.8392 -2.2232 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507673952.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:13 Heat of formation + Delta-G solvation = 17.801749 kcal Electronic energy + Delta-G solvation = -29908.397609 eV Core-core repulsion = 25845.811522 eV Total energy + Delta-G solvation = -4062.586087 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 4.28 seconds Orbital eigenvalues (eV) -41.49938 -39.91075 -37.36914 -35.60104 -35.05634 -34.43681 -32.99995 -31.31089 -30.23879 -29.59880 -27.89606 -26.93758 -26.77767 -25.73389 -25.03456 -22.87783 -21.80293 -21.30208 -20.50074 -19.94145 -18.85013 -17.32277 -16.81311 -16.59276 -16.15290 -15.84991 -15.67831 -15.19902 -14.79717 -14.68259 -14.53565 -14.24943 -13.99829 -13.52853 -13.46461 -13.22426 -13.17724 -13.03553 -12.88201 -12.78571 -12.72247 -12.40468 -12.25375 -11.81111 -11.57964 -11.43257 -11.21013 -11.05861 -11.04765 -10.81370 -10.65231 -10.56847 -10.41276 -10.27459 -9.99991 -9.83270 -9.67411 -9.66425 -9.44044 -8.58631 -8.55662 -8.27966 -6.60585 -5.65103 -3.11751 1.64237 2.25957 2.55548 2.83279 3.15011 3.41137 3.46831 3.47899 4.19657 4.53503 4.57509 4.59729 4.74971 4.78271 4.90172 5.01954 5.03446 5.07561 5.11091 5.17581 5.24916 5.39017 5.45560 5.47217 5.50218 5.54045 5.57548 5.59869 5.66923 5.81053 5.86535 5.92958 6.04875 6.07895 6.13188 6.26131 6.32935 6.47206 6.60821 6.68163 6.73986 6.80284 6.94843 7.44530 7.51722 7.52223 7.79826 7.87104 8.37267 8.42655 8.48029 9.30366 9.94374 10.44183 11.38578 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.016915 B = 0.002189 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.900882 B =12788.076212 C =13249.871207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.005 3.995 3 H 0.083 0.917 4 C -0.129 4.129 5 C 0.519 3.481 6 O -0.533 6.533 7 N -0.612 5.612 8 C 0.078 3.922 9 C 0.082 3.918 10 C 0.071 3.929 11 H 0.089 0.911 12 O -0.545 6.545 13 C 0.125 3.875 14 N -0.592 5.592 15 C 0.169 3.831 16 C -0.253 4.253 17 H 0.064 0.936 18 C 0.001 3.999 19 N -0.906 5.906 20 Si 0.904 3.096 21 H -0.285 1.285 22 H -0.291 1.291 23 H -0.284 1.284 24 C -0.226 4.226 25 C 0.054 3.946 26 N -0.301 5.301 27 N -0.380 5.380 28 C 0.102 3.898 29 C 0.057 3.943 30 H 0.045 0.955 31 H 0.077 0.923 32 H 0.049 0.951 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.053 0.947 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.365 0.635 41 H 0.038 0.962 42 H 0.052 0.948 43 H 0.026 0.974 44 H 0.036 0.964 45 H 0.002 0.998 46 H 0.252 0.748 47 H 0.180 0.820 48 H 0.074 0.926 49 H 0.087 0.913 50 H 0.086 0.914 51 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.576 -14.399 -21.438 26.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.015 4.015 3 H 0.102 0.898 4 C -0.169 4.169 5 C 0.307 3.693 6 O -0.410 6.410 7 N -0.345 5.345 8 C -0.066 4.066 9 C -0.041 4.041 10 C 0.008 3.992 11 H 0.107 0.893 12 O -0.349 6.349 13 C -0.004 4.004 14 N -0.314 5.314 15 C 0.025 3.975 16 C -0.383 4.383 17 H 0.082 0.918 18 C -0.197 4.197 19 N -0.551 5.551 20 Si 0.734 3.266 21 H -0.212 1.212 22 H -0.217 1.217 23 H -0.210 1.210 24 C -0.238 4.238 25 C -0.132 4.132 26 N -0.122 5.122 27 N -0.162 5.162 28 C -0.039 4.039 29 C -0.089 4.089 30 H 0.064 0.936 31 H 0.096 0.904 32 H 0.068 0.932 33 H 0.108 0.892 34 H 0.106 0.894 35 H 0.072 0.928 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.101 0.899 39 H 0.097 0.903 40 H 0.211 0.789 41 H 0.057 0.943 42 H 0.071 0.929 43 H 0.044 0.956 44 H 0.055 0.945 45 H 0.021 0.979 46 H 0.062 0.938 47 H 0.197 0.803 48 H 0.092 0.908 49 H 0.106 0.894 50 H 0.105 0.895 51 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -5.885 -14.769 -22.471 27.526 hybrid contribution 0.512 0.435 1.147 1.329 sum -5.373 -14.334 -21.324 26.249 Atomic orbital electron populations 1.21910 0.94234 1.01232 1.02864 1.19128 0.95889 0.98364 0.88091 0.89834 1.21733 1.02691 0.99882 0.92566 1.20514 0.79051 0.85482 0.84206 1.90615 1.40142 1.24187 1.86028 1.47784 1.55759 1.24555 1.06394 1.21782 0.95856 0.85656 1.03284 1.22353 0.99769 0.95477 0.86534 1.23181 0.97952 0.88539 0.89573 0.89275 1.86563 1.39790 1.53286 1.55233 1.21305 0.91644 0.93391 0.94024 1.43677 1.21689 1.06860 1.59139 1.20729 0.98709 0.84784 0.93311 1.19080 1.04573 0.93459 1.21190 0.91850 1.25004 0.99582 0.96638 0.98509 1.70073 1.36992 1.04346 1.43705 0.86355 0.84440 0.77131 0.78705 1.21177 1.21665 1.21012 1.20116 1.07828 0.95196 1.00629 1.23718 0.99284 0.96134 0.94057 1.77334 1.13609 1.06116 1.15182 1.48437 1.40259 1.08411 1.19119 1.21836 0.94615 1.03538 0.83919 1.22401 0.99990 0.95753 0.90737 0.93560 0.90404 0.93163 0.89189 0.89414 0.92815 0.91183 0.90853 0.89945 0.90275 0.78921 0.94335 0.92937 0.95612 0.94484 0.97949 0.93786 0.80328 0.90784 0.89431 0.89500 0.80936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 8.83 37.16 0.33 -1.15 16 2 C 0.01 0.05 2.40 -91.78 -0.22 -0.17 16 3 H 0.08 0.96 7.92 -51.93 -0.41 0.55 16 4 C -0.13 -1.26 3.58 -27.88 -0.10 -1.36 16 5 C 0.52 6.76 7.02 -10.98 -0.08 6.69 16 6 O -0.53 -8.44 12.53 -2.15 -0.03 -8.46 16 7 N -0.61 -7.56 2.86 -181.57 -0.52 -8.08 16 8 C 0.08 0.70 10.24 59.84 0.61 1.32 16 9 C 0.08 1.12 5.11 -4.04 -0.02 1.10 16 10 C 0.07 1.25 3.48 -26.73 -0.09 1.15 16 11 H 0.09 1.74 8.14 -51.93 -0.42 1.31 16 12 O -0.54 -10.58 11.01 -42.94 -0.47 -11.06 16 13 C 0.13 2.52 5.34 -4.04 -0.02 2.50 16 14 N -0.59 -15.17 2.84 -181.11 -0.51 -15.68 16 15 C 0.17 4.36 8.66 59.85 0.52 4.88 16 16 C -0.25 -7.07 9.65 -15.06 -0.15 -7.22 16 17 H 0.06 1.71 7.87 -52.49 -0.41 1.30 16 18 C 0.00 0.03 5.09 -17.43 -0.09 -0.06 16 19 N -0.91 -27.11 10.76 55.49 0.60 -26.51 16 20 Si 0.90 22.23 29.58 -169.99 -5.03 17.20 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 24 C -0.23 -2.17 4.80 -105.05 -0.50 -2.67 16 25 C 0.05 0.52 11.54 -17.36 -0.20 0.32 16 26 N -0.30 -3.31 12.58 30.62 0.39 -2.93 16 27 N -0.38 -3.44 4.01 -68.17 -0.27 -3.71 16 28 C 0.10 0.50 11.47 59.85 0.69 1.19 16 29 C 0.06 0.50 11.38 -17.22 -0.20 0.31 16 30 H 0.05 0.41 8.03 -51.93 -0.42 -0.01 16 31 H 0.08 0.95 5.95 -51.93 -0.31 0.64 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.09 0.86 7.40 -51.93 -0.38 0.48 16 34 H 0.09 0.69 8.10 -51.93 -0.42 0.27 16 35 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.07 0.55 6.44 -51.93 -0.33 0.22 16 37 H 0.07 0.68 8.07 -51.93 -0.42 0.26 16 38 H 0.08 1.17 7.42 -51.93 -0.39 0.79 16 39 H 0.08 0.93 8.07 -51.93 -0.42 0.51 16 40 H 0.36 6.54 8.49 45.56 0.39 6.93 16 41 H 0.04 0.73 8.07 -51.93 -0.42 0.31 16 42 H 0.05 1.02 8.04 -51.93 -0.42 0.61 16 43 H 0.03 0.71 7.33 -51.93 -0.38 0.33 16 44 H 0.04 1.03 7.37 -51.93 -0.38 0.65 16 45 H 0.00 0.05 7.00 -51.93 -0.36 -0.32 16 46 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 47 H 0.18 1.30 8.06 -52.49 -0.42 0.87 16 48 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 49 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 50 H 0.09 0.24 8.14 -51.93 -0.42 -0.19 16 51 H 0.17 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 410.93 15.07 6.19 6.19 Total: -1.00 -35.74 410.93 -7.19 -42.93 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -8.01 Total: 3.27 kcal Atomic # 6 Polarization: 6.36 SS G_CDS: 0.48 Total: 6.84 kcal Atomic # 7 Polarization: -56.59 SS G_CDS: -0.32 Total: -56.92 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: -0.50 Total: -19.52 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.03 Total: 17.20 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -35.74 -7.19 -42.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507673952.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.733 kcal (2) G-P(sol) polarization free energy of solvation -35.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.28 seconds