Wall clock time and date at job start Tue Mar 31 2020 22:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46785 * 2 1 4 4 C 1.52996 * 109.47582 * 120.00203 * 2 1 3 5 5 C 1.50701 * 109.47103 * 295.00557 * 4 2 1 6 6 O 1.21279 * 120.00120 * 359.97438 * 5 4 2 7 7 N 1.34781 * 119.99923 * 179.97438 * 5 4 2 8 8 C 1.46493 * 120.00083 * 0.02562 * 7 5 4 9 9 C 1.46500 * 119.99837 * 179.97438 * 7 5 4 10 10 C 1.53006 * 109.47073 * 270.00153 * 9 7 5 11 11 H 1.09000 * 109.47351 * 305.00204 * 10 9 7 12 12 O 1.42903 * 109.47175 * 65.00242 * 10 9 7 13 13 C 1.53004 * 109.47038 * 185.00046 * 10 9 7 14 14 N 1.46496 * 109.47142 * 180.02562 * 13 10 9 15 15 C 1.46502 * 120.00019 * 89.99659 * 14 13 10 16 16 C 1.36938 * 119.99910 * 270.00473 * 14 13 10 17 17 H 1.07999 * 120.00472 * 23.18471 * 16 14 13 18 18 C 1.38819 * 119.99724 * 203.18626 * 16 14 13 19 19 N 1.31621 * 119.99722 * 13.71091 * 18 16 14 20 20 Si 1.86796 * 119.99991 * 193.70408 * 18 16 14 21 21 H 1.48500 * 109.47196 * 60.00398 * 20 18 16 22 22 H 1.48496 * 109.47091 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47295 * 300.00177 * 20 18 16 24 24 C 1.50697 * 109.47117 * 240.00512 * 2 1 3 25 25 C 1.39870 * 126.04151 * 299.68871 * 24 2 1 26 26 N 1.30838 * 108.20307 * 179.82127 * 25 24 2 27 27 N 1.40088 * 108.20642 * 0.43397 * 26 25 24 28 28 C 1.46497 * 126.03964 * 179.74190 * 27 26 25 29 29 C 1.34955 * 107.92319 * 359.72344 * 27 26 25 30 30 H 1.09003 * 109.46785 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47280 * 299.99117 * 1 2 3 32 32 H 1.08994 * 109.47610 * 60.00170 * 1 2 3 33 33 H 1.08998 * 109.47381 * 175.00277 * 4 2 1 34 34 H 1.09005 * 109.47050 * 55.00254 * 4 2 1 35 35 H 1.09003 * 109.47179 * 269.99916 * 8 7 5 36 36 H 1.09003 * 109.47267 * 29.99091 * 8 7 5 37 37 H 1.09001 * 109.47502 * 149.99564 * 8 7 5 38 38 H 1.09001 * 109.47407 * 29.99797 * 9 7 5 39 39 H 1.08995 * 109.46944 * 150.00411 * 9 7 5 40 40 H 0.96699 * 113.99918 * 59.99631 * 12 10 9 41 41 H 1.09000 * 109.47179 * 300.00263 * 13 10 9 42 42 H 1.08997 * 109.46781 * 59.99952 * 13 10 9 43 43 H 1.09005 * 109.46559 * 95.15871 * 15 14 13 44 44 H 1.09005 * 109.47254 * 215.15866 * 15 14 13 45 45 H 1.08999 * 109.47576 * 335.16330 * 15 14 13 46 46 H 0.97004 * 119.99530 * 180.02562 * 19 18 16 47 47 H 1.07998 * 125.89318 * 359.97438 * 25 24 2 48 48 H 1.08997 * 109.47216 * 269.97958 * 28 27 26 49 49 H 1.09003 * 109.46810 * 29.97833 * 28 27 26 50 50 H 1.08991 * 109.47311 * 149.97700 * 28 27 26 51 51 H 1.07999 * 126.12681 * 180.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.6413 0.0569 2.4766 6 8 1.0116 1.0872 2.3633 7 7 1.9846 -0.3921 3.7001 8 6 2.7457 -1.6363 3.8369 9 6 1.5974 0.3647 4.8933 10 6 2.6957 1.3732 5.2362 11 1 3.6473 0.8523 5.3417 12 8 2.7964 2.3419 4.1903 13 6 2.3505 2.0760 6.5507 14 7 3.4017 3.0421 6.8787 15 6 3.3034 4.4228 6.3988 16 6 4.4764 2.6546 7.6337 17 1 4.7589 1.6131 7.6765 18 6 5.2027 3.6005 8.3442 19 7 4.7156 4.8111 8.5162 20 14 6.8712 3.1551 9.0562 21 1 7.7860 2.7509 7.9585 22 1 7.4369 4.3312 9.7647 23 1 6.7170 2.0291 10.0121 24 6 2.0323 -0.7103 -1.2305 25 6 1.7785 -2.0424 -1.5730 26 7 2.3776 -2.2937 -2.7087 27 7 3.0409 -1.1305 -3.1204 28 6 3.8399 -0.9794 -4.3390 29 6 2.8135 -0.1736 -2.1964 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 3.1264 -0.7994 1.2055 34 1 1.6055 -1.7199 1.2950 35 1 2.0564 -2.4764 3.9221 36 1 3.3787 -1.7733 2.9601 37 1 3.3683 -1.5851 4.7301 38 1 0.6647 0.8948 4.7006 39 1 1.4597 -0.3208 5.7295 40 1 1.9840 2.8445 4.0403 41 1 1.3988 2.5970 6.4451 42 1 2.2737 1.3372 7.3483 43 1 2.8545 5.0453 7.1729 44 1 4.2996 4.7976 6.1635 45 1 2.6829 4.4529 5.5031 46 1 5.2234 5.4721 9.0123 47 1 1.1877 -2.7419 -1.0002 48 1 4.8774 -1.2384 -4.1276 49 1 3.4507 -1.6410 -5.1129 50 1 3.7861 0.0533 -4.6830 51 1 3.1875 0.8392 -2.2232 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507673952.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:11 Heat of formation + Delta-G solvation = -6.274350 kcal Electronic energy + Delta-G solvation = -29909.441627 eV Core-core repulsion = 25845.811522 eV Total energy + Delta-G solvation = -4063.630105 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -42.16923 -40.91597 -38.83017 -36.85145 -36.10832 -35.90487 -33.61149 -33.25410 -31.46989 -30.48984 -28.92298 -28.01732 -27.73994 -27.33567 -26.33325 -23.97973 -23.11298 -22.21092 -21.95859 -20.71089 -19.76223 -18.77052 -18.18580 -17.49641 -17.32565 -16.84911 -16.70290 -16.42056 -16.27515 -16.05207 -15.49692 -15.23551 -15.17926 -15.03683 -14.69124 -14.34202 -14.14149 -13.84314 -13.73024 -13.70084 -13.59882 -13.33383 -13.17143 -13.03489 -13.00113 -12.76519 -12.63800 -12.49652 -12.34113 -12.20684 -12.01991 -11.97404 -11.92792 -11.85037 -11.76308 -11.30719 -11.18098 -10.62975 -10.47337 -10.33134 -9.45029 -9.26091 -8.64693 -7.78977 -5.28570 0.98616 1.45226 1.49080 1.55082 1.72723 1.82165 1.89117 2.23124 2.52365 3.31897 3.55786 3.64657 3.76737 3.83779 3.99878 4.12145 4.17647 4.27252 4.30021 4.34661 4.39484 4.44906 4.48085 4.58842 4.61548 4.69400 4.70671 4.73609 4.77021 4.82657 4.86952 4.89855 4.92532 4.99161 5.01425 5.12082 5.26891 5.30615 5.39170 5.48998 5.52764 5.62659 5.66566 5.70514 5.78518 6.16044 6.34374 6.58310 6.77948 6.99175 7.16805 7.41094 7.89937 8.35147 9.22767 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.016915 B = 0.002189 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.900882 B =12788.076212 C =13249.871207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.014 3.986 3 H 0.063 0.937 4 C -0.119 4.119 5 C 0.511 3.489 6 O -0.567 6.567 7 N -0.615 5.615 8 C 0.072 3.928 9 C 0.094 3.906 10 C 0.085 3.915 11 H 0.072 0.928 12 O -0.562 6.562 13 C 0.122 3.878 14 N -0.611 5.611 15 C 0.187 3.813 16 C -0.259 4.259 17 H 0.071 0.929 18 C -0.059 4.059 19 N -0.941 5.941 20 Si 0.969 3.031 21 H -0.282 1.282 22 H -0.296 1.296 23 H -0.270 1.270 24 C -0.238 4.238 25 C 0.052 3.948 26 N -0.335 5.335 27 N -0.383 5.383 28 C 0.094 3.906 29 C 0.054 3.946 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.047 0.953 33 H 0.095 0.905 34 H 0.113 0.887 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.104 0.896 40 H 0.370 0.630 41 H 0.050 0.950 42 H 0.061 0.939 43 H 0.000 1.000 44 H 0.004 0.996 45 H 0.029 0.971 46 H 0.247 0.753 47 H 0.198 0.802 48 H 0.083 0.917 49 H 0.090 0.910 50 H 0.110 0.890 51 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.377 -16.739 -22.352 28.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.006 4.006 3 H 0.082 0.918 4 C -0.159 4.159 5 C 0.300 3.700 6 O -0.446 6.446 7 N -0.347 5.347 8 C -0.071 4.071 9 C -0.030 4.030 10 C 0.022 3.978 11 H 0.090 0.910 12 O -0.368 6.368 13 C -0.005 4.005 14 N -0.333 5.333 15 C 0.042 3.958 16 C -0.389 4.389 17 H 0.089 0.911 18 C -0.254 4.254 19 N -0.588 5.588 20 Si 0.797 3.203 21 H -0.209 1.209 22 H -0.222 1.222 23 H -0.196 1.196 24 C -0.250 4.250 25 C -0.133 4.133 26 N -0.157 5.157 27 N -0.166 5.166 28 C -0.047 4.047 29 C -0.092 4.092 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.113 0.887 34 H 0.131 0.869 35 H 0.097 0.903 36 H 0.101 0.899 37 H 0.089 0.911 38 H 0.096 0.904 39 H 0.122 0.878 40 H 0.217 0.783 41 H 0.069 0.931 42 H 0.079 0.921 43 H 0.019 0.981 44 H 0.023 0.977 45 H 0.048 0.952 46 H 0.056 0.944 47 H 0.215 0.785 48 H 0.101 0.899 49 H 0.109 0.891 50 H 0.128 0.872 51 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -5.694 -17.181 -23.413 29.593 hybrid contribution 0.412 1.148 1.356 1.824 sum -5.282 -16.033 -22.056 27.775 Atomic orbital electron populations 1.21826 0.94437 1.01760 1.01587 1.18969 0.95612 0.97393 0.88670 0.91842 1.21717 1.03023 1.00469 0.90696 1.21114 0.78445 0.85271 0.85133 1.90605 1.41678 1.25760 1.86573 1.47892 1.55820 1.25303 1.05712 1.22020 0.96358 0.84834 1.03851 1.22080 0.97629 0.95204 0.88122 1.22894 0.98473 0.88699 0.87698 0.91042 1.86533 1.40534 1.54036 1.55658 1.21529 0.90677 0.92765 0.95529 1.43925 1.22710 1.07482 1.59197 1.20417 0.96948 0.84970 0.93482 1.19468 1.05212 0.93792 1.20472 0.91117 1.25833 1.03146 0.96763 0.99659 1.70246 1.38193 1.05308 1.45004 0.85310 0.80047 0.76873 0.78037 1.20863 1.22228 1.19558 1.20085 1.08723 0.95394 1.00761 1.24039 0.99044 0.96430 0.93828 1.77280 1.14833 1.07521 1.16063 1.48758 1.40047 1.07850 1.19917 1.22141 0.94577 1.05200 0.82736 1.22801 0.99434 0.96553 0.90457 0.92088 0.92580 0.93431 0.88660 0.86878 0.90253 0.89898 0.91079 0.90410 0.87813 0.78314 0.93129 0.92108 0.98136 0.97733 0.95212 0.94426 0.78511 0.89854 0.89139 0.87173 0.78969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 8.83 71.98 0.64 -2.06 16 2 C 0.01 0.26 2.40 -11.54 -0.03 0.23 16 3 H 0.06 1.45 7.92 -2.39 -0.02 1.43 16 4 C -0.12 -2.09 3.58 29.85 0.11 -1.99 16 5 C 0.51 12.54 7.02 87.66 0.62 13.15 16 6 O -0.57 -17.70 12.53 4.35 0.05 -17.65 16 7 N -0.61 -13.85 2.86 -846.75 -2.42 -16.26 16 8 C 0.07 1.08 10.24 127.77 1.31 2.38 16 9 C 0.09 2.38 5.11 86.38 0.44 2.82 16 10 C 0.09 2.90 3.48 30.60 0.11 3.00 16 11 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 12 O -0.56 -21.57 11.01 -141.61 -1.56 -23.13 16 13 C 0.12 4.79 5.34 86.38 0.46 5.25 16 14 N -0.61 -31.33 2.84 -726.92 -2.07 -33.39 16 15 C 0.19 9.82 8.66 127.77 1.11 10.93 16 16 C -0.26 -14.44 9.65 84.03 0.81 -13.63 16 17 H 0.07 3.75 7.87 -2.91 -0.02 3.73 16 18 C -0.06 -3.42 5.09 84.86 0.43 -2.98 16 19 N -0.94 -57.53 10.76 21.65 0.23 -57.29 16 20 Si 0.97 45.92 29.58 68.60 2.03 47.95 16 21 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 22 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 23 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 24 C -0.24 -4.19 4.80 -20.14 -0.10 -4.29 16 25 C 0.05 0.91 11.54 85.24 0.98 1.89 16 26 N -0.33 -6.92 12.58 -57.02 -0.72 -7.63 16 27 N -0.38 -6.35 4.01 -369.57 -1.48 -7.83 16 28 C 0.09 0.76 11.47 127.77 1.47 2.22 16 29 C 0.05 0.87 11.38 83.54 0.95 1.82 16 30 H 0.06 0.97 8.03 -2.39 -0.02 0.96 16 31 H 0.06 1.35 5.95 -2.39 -0.01 1.34 16 32 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.10 1.61 7.40 -2.39 -0.02 1.59 16 34 H 0.11 1.41 8.10 -2.38 -0.02 1.39 16 35 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.08 1.04 6.44 -2.39 -0.02 1.03 16 37 H 0.07 1.12 8.07 -2.39 -0.02 1.10 16 38 H 0.08 2.09 7.42 -2.39 -0.02 2.07 16 39 H 0.10 2.13 8.07 -2.39 -0.02 2.11 16 40 H 0.37 13.15 8.49 -74.06 -0.63 12.52 16 41 H 0.05 1.86 8.07 -2.39 -0.02 1.84 16 42 H 0.06 2.28 8.04 -2.39 -0.02 2.26 16 43 H 0.00 0.02 7.33 -2.38 -0.02 0.01 16 44 H 0.00 0.22 7.37 -2.38 -0.02 0.21 16 45 H 0.03 1.35 7.00 -2.39 -0.02 1.34 16 46 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 47 H 0.20 2.39 8.06 -2.91 -0.02 2.37 16 48 H 0.08 0.52 8.14 -2.39 -0.02 0.51 16 49 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 50 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 51 H 0.19 2.12 8.06 -2.91 -0.02 2.10 16 Total: -1.00 -78.17 410.93 3.65 -74.52 By element: Atomic # 1 Polarization: 21.68 SS G_CDS: 0.28 Total: 21.96 kcal Atomic # 6 Polarization: 9.46 SS G_CDS: 9.30 Total: 18.76 kcal Atomic # 7 Polarization: -115.96 SS G_CDS: -6.45 Total: -122.41 kcal Atomic # 8 Polarization: -39.27 SS G_CDS: -1.51 Total: -40.77 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Total: -78.17 3.65 -74.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507673952.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.243 kcal (2) G-P(sol) polarization free energy of solvation -78.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds