Wall clock time and date at job start Tue Mar 31 2020 22:42:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47077 * 2 1 4 4 C 1.52998 * 109.46925 * 240.00026 * 2 1 3 5 5 C 1.50696 * 109.47284 * 65.00309 * 4 2 1 6 6 O 1.21276 * 120.00019 * 359.97438 * 5 4 2 7 7 N 1.34780 * 120.00019 * 180.02562 * 5 4 2 8 8 C 1.46499 * 119.99975 * 359.97438 * 7 5 4 9 9 C 1.46499 * 119.99921 * 179.97438 * 7 5 4 10 10 C 1.53008 * 109.47039 * 89.99921 * 9 7 5 11 11 H 1.08997 * 109.46771 * 304.99449 * 10 9 7 12 12 O 1.42896 * 109.47076 * 65.00153 * 10 9 7 13 13 C 1.52996 * 109.46670 * 184.99836 * 10 9 7 14 14 N 1.46503 * 109.46811 * 180.02562 * 13 10 9 15 15 C 1.46499 * 120.00205 * 90.00138 * 14 13 10 16 16 C 1.36950 * 119.99704 * 269.99861 * 14 13 10 17 17 H 1.08000 * 119.99200 * 142.09594 * 16 14 13 18 18 C 1.38801 * 120.00068 * 322.09633 * 16 14 13 19 19 N 1.31618 * 120.00143 * 157.11405 * 18 16 14 20 20 Si 1.86808 * 120.00027 * 337.10933 * 18 16 14 21 21 H 1.48510 * 109.46800 * 95.73683 * 20 18 16 22 22 H 1.48504 * 109.47209 * 215.73174 * 20 18 16 23 23 H 1.48490 * 109.47134 * 335.73605 * 20 18 16 24 24 C 1.50705 * 109.47027 * 119.99922 * 2 1 3 25 25 C 1.39868 * 126.04055 * 60.02489 * 24 2 1 26 26 N 1.30833 * 108.20285 * 179.97438 * 25 24 2 27 27 N 1.40083 * 108.20572 * 0.02562 * 26 25 24 28 28 C 1.46501 * 126.03711 * 179.73418 * 27 26 25 29 29 C 1.34951 * 107.92405 * 0.02562 * 27 26 25 30 30 H 1.09006 * 109.46934 * 300.00346 * 1 2 3 31 31 H 1.09005 * 109.46685 * 59.99980 * 1 2 3 32 32 H 1.08997 * 109.47077 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.47108 * 185.00300 * 4 2 1 34 34 H 1.08999 * 109.47308 * 304.99575 * 4 2 1 35 35 H 1.09000 * 109.46950 * 90.00286 * 8 7 5 36 36 H 1.09007 * 109.47199 * 210.00260 * 8 7 5 37 37 H 1.08998 * 109.47276 * 330.00450 * 8 7 5 38 38 H 1.09006 * 109.47089 * 209.99315 * 9 7 5 39 39 H 1.08995 * 109.47244 * 329.99890 * 9 7 5 40 40 H 0.96697 * 114.00466 * 59.99354 * 12 10 9 41 41 H 1.08995 * 109.47775 * 299.99847 * 13 10 9 42 42 H 1.08998 * 109.47311 * 60.00135 * 13 10 9 43 43 H 1.08997 * 109.47027 * 89.56213 * 15 14 13 44 44 H 1.09002 * 109.46707 * 209.56113 * 15 14 13 45 45 H 1.08997 * 109.46765 * 329.55724 * 15 14 13 46 46 H 0.97005 * 120.00417 * 179.97438 * 19 18 16 47 47 H 1.07998 * 125.89764 * 359.97438 * 25 24 2 48 48 H 1.09002 * 109.46818 * 90.02503 * 28 27 26 49 49 H 1.08993 * 109.47075 * 210.02275 * 28 27 26 50 50 H 1.08995 * 109.47193 * 330.02426 * 28 27 26 51 51 H 1.08002 * 126.12350 * 180.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6414 0.0571 -2.4766 6 8 1.0110 1.0869 -2.3633 7 7 1.9845 -0.3919 -3.7002 8 6 2.7454 -1.6363 -3.8370 9 6 1.5965 0.3644 -4.8933 10 6 2.6941 1.3736 -5.2367 11 1 2.8935 2.0027 -4.3692 12 8 3.8857 0.6751 -5.6029 13 6 2.2356 2.2475 -6.4058 14 7 3.2867 3.2134 -6.7350 15 6 4.3175 2.8680 -7.7171 16 6 3.3057 4.4393 -6.1248 17 1 4.2471 4.8888 -5.8455 18 6 2.1151 5.1039 -5.8653 19 7 2.0638 6.0171 -4.9189 20 14 0.5853 4.7022 -6.8594 21 1 -0.2377 3.7099 -6.1222 22 1 -0.2059 5.9408 -7.0726 23 1 0.9833 4.1367 -8.1735 24 6 2.0323 -0.7104 1.2305 25 6 1.7739 -2.0410 1.5757 26 7 2.3783 -2.2942 2.7081 27 7 3.0409 -1.1308 3.1203 28 6 3.8359 -0.9785 4.3413 29 6 2.8123 -0.1735 2.1971 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 3.1263 -0.7995 -1.2056 34 1 1.6054 -1.7198 -1.2951 35 1 2.0559 -2.4762 -3.9223 36 1 3.3680 -1.5851 -4.7303 37 1 3.3784 -1.7734 -2.9604 38 1 1.4590 -0.3213 -5.7294 39 1 0.6635 0.8939 -4.7004 40 1 3.7818 0.0947 -6.3693 41 1 2.0360 1.6186 -7.2733 42 1 1.3266 2.7803 -6.1266 43 1 3.9825 3.1584 -8.7128 44 1 5.2404 3.3956 -7.4759 45 1 4.4966 1.7931 -7.6929 46 1 1.2318 6.4818 -4.7377 47 1 1.1783 -2.7388 1.0059 48 1 4.8739 -1.2384 4.1338 49 1 3.7816 0.0549 4.6836 50 1 3.4437 -1.6385 5.1150 51 1 3.1863 0.8394 2.2241 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507673953.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:21 Heat of formation + Delta-G solvation = 22.654439 kcal Electronic energy + Delta-G solvation = -30302.722811 eV Core-core repulsion = 26240.347152 eV Total energy + Delta-G solvation = -4062.375659 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 2.49 seconds Orbital eigenvalues (eV) -41.43416 -39.87541 -37.63550 -35.61249 -35.06394 -34.48492 -32.94220 -31.50944 -30.55956 -29.71183 -28.00103 -26.96586 -26.70873 -25.98648 -25.03141 -22.78851 -21.76337 -21.23925 -20.81447 -19.88447 -18.80683 -17.29137 -16.95783 -16.56472 -16.01431 -15.83621 -15.63880 -15.42432 -15.15894 -14.81081 -14.55844 -14.05797 -13.99471 -13.60723 -13.43697 -13.29559 -13.14972 -13.02370 -12.79741 -12.69830 -12.64228 -12.38925 -12.35278 -12.21426 -11.85832 -11.49759 -11.42464 -11.27388 -11.12932 -10.97969 -10.79855 -10.55938 -10.48892 -10.38124 -10.13322 -9.77017 -9.60372 -9.55108 -9.39181 -8.51787 -8.48958 -8.28326 -6.69605 -5.93969 -3.33896 1.70806 2.32279 2.62254 2.87220 3.18644 3.34286 3.49136 3.54085 4.26011 4.56865 4.63613 4.67235 4.81217 4.82431 4.84910 4.97079 5.06984 5.07705 5.11602 5.17095 5.27980 5.36234 5.41210 5.44854 5.51056 5.54991 5.62868 5.66233 5.68466 5.75130 5.92913 5.94692 5.98282 6.01949 6.15046 6.34429 6.37270 6.43325 6.46924 6.55160 6.64204 6.76393 6.79985 6.80714 6.90447 7.50874 7.55760 8.09370 8.17750 8.43116 8.45161 9.04378 9.76981 10.18114 11.21931 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.014834 B = 0.002658 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.115746 B =10529.817530 C =11058.805241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.003 3.997 3 H 0.084 0.916 4 C -0.127 4.127 5 C 0.508 3.492 6 O -0.527 6.527 7 N -0.610 5.610 8 C 0.083 3.917 9 C 0.082 3.918 10 C 0.076 3.924 11 H 0.108 0.892 12 O -0.550 6.550 13 C 0.113 3.887 14 N -0.602 5.602 15 C 0.131 3.869 16 C -0.270 4.270 17 H 0.077 0.923 18 C 0.037 3.963 19 N -0.896 5.896 20 Si 0.874 3.126 21 H -0.284 1.284 22 H -0.300 1.300 23 H -0.271 1.271 24 C -0.225 4.225 25 C 0.054 3.946 26 N -0.302 5.302 27 N -0.380 5.380 28 C 0.103 3.897 29 C 0.057 3.943 30 H 0.050 0.950 31 H 0.077 0.923 32 H 0.045 0.955 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.049 0.951 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.090 0.910 40 H 0.354 0.646 41 H 0.039 0.961 42 H 0.062 0.938 43 H 0.002 0.998 44 H 0.040 0.960 45 H 0.032 0.968 46 H 0.263 0.737 47 H 0.180 0.820 48 H 0.073 0.927 49 H 0.087 0.913 50 H 0.087 0.913 51 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.986 -20.020 11.545 23.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.017 4.017 3 H 0.103 0.897 4 C -0.167 4.167 5 C 0.296 3.704 6 O -0.403 6.403 7 N -0.344 5.344 8 C -0.060 4.060 9 C -0.042 4.042 10 C 0.014 3.986 11 H 0.125 0.875 12 O -0.353 6.353 13 C -0.015 4.015 14 N -0.325 5.325 15 C -0.014 4.014 16 C -0.399 4.399 17 H 0.094 0.906 18 C -0.164 4.164 19 N -0.537 5.537 20 Si 0.704 3.296 21 H -0.212 1.212 22 H -0.228 1.228 23 H -0.196 1.196 24 C -0.236 4.236 25 C -0.132 4.132 26 N -0.123 5.123 27 N -0.163 5.163 28 C -0.039 4.039 29 C -0.088 4.088 30 H 0.069 0.931 31 H 0.096 0.904 32 H 0.064 0.936 33 H 0.109 0.891 34 H 0.107 0.893 35 H 0.067 0.933 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.108 0.892 40 H 0.199 0.801 41 H 0.058 0.942 42 H 0.080 0.920 43 H 0.020 0.980 44 H 0.059 0.941 45 H 0.051 0.949 46 H 0.073 0.927 47 H 0.197 0.803 48 H 0.092 0.908 49 H 0.105 0.895 50 H 0.105 0.895 51 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 1.165 -19.843 13.237 23.882 hybrid contribution -1.223 0.141 -1.537 1.969 sum -0.058 -19.702 11.701 22.915 Atomic orbital electron populations 1.21916 0.94186 1.01173 1.03028 1.19158 0.96001 0.98480 0.88097 0.89721 1.21724 1.02698 0.99841 0.92396 1.20714 0.79454 0.85774 0.84449 1.90731 1.39551 1.24053 1.85993 1.47772 1.55687 1.24797 1.06108 1.21761 0.95547 0.85223 1.03502 1.22309 1.00245 0.95016 0.86586 1.23144 0.83863 0.91327 1.00311 0.87453 1.86656 1.35633 1.62042 1.50968 1.21754 0.93440 0.91944 0.94321 1.43829 1.30089 1.12830 1.45766 1.21041 0.92252 0.97226 0.90863 1.18776 0.94212 0.93579 1.33331 0.90559 1.25469 0.97865 0.95971 0.97117 1.69879 1.27090 1.27834 1.28860 0.86954 0.83891 0.76535 0.82175 1.21160 1.22809 1.19582 1.20102 1.07728 0.95225 1.00572 1.23708 0.99205 0.96150 0.94111 1.77319 1.13559 1.06157 1.15287 1.48430 1.40433 1.08348 1.19058 1.21831 0.94674 1.03542 0.83825 1.22419 0.99996 0.95757 0.90667 0.93061 0.90383 0.93552 0.89088 0.89309 0.93268 0.90580 0.91281 0.90952 0.89206 0.80121 0.94221 0.92044 0.98016 0.94124 0.94933 0.92695 0.80339 0.90811 0.89483 0.89476 0.80859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 8.82 37.16 0.33 -1.43 16 2 C 0.00 0.03 2.40 -91.77 -0.22 -0.19 16 3 H 0.08 1.15 7.92 -51.93 -0.41 0.74 16 4 C -0.13 -1.41 3.58 -27.89 -0.10 -1.51 16 5 C 0.51 7.69 7.39 -10.99 -0.08 7.61 16 6 O -0.53 -10.29 13.54 5.56 0.08 -10.22 16 7 N -0.61 -8.36 2.84 -181.57 -0.52 -8.88 16 8 C 0.08 0.79 10.06 59.85 0.60 1.39 16 9 C 0.08 1.26 5.07 -4.04 -0.02 1.24 16 10 C 0.08 1.44 3.48 -26.73 -0.09 1.34 16 11 H 0.11 2.58 8.14 -51.93 -0.42 2.15 16 12 O -0.55 -9.17 10.88 -35.23 -0.38 -9.55 16 13 C 0.11 2.40 4.21 -4.04 -0.02 2.39 16 14 N -0.60 -14.68 2.39 -181.12 -0.43 -15.12 16 15 C 0.13 2.69 10.44 59.85 0.62 3.32 16 16 C -0.27 -7.84 9.90 -15.06 -0.15 -7.99 16 17 H 0.08 2.40 8.06 -52.49 -0.42 1.98 16 18 C 0.04 1.09 5.29 -17.43 -0.09 1.00 16 19 N -0.90 -28.20 13.97 55.49 0.78 -27.42 16 20 Si 0.87 22.70 25.09 -169.99 -4.27 18.44 16 21 H -0.28 -7.15 6.68 56.52 0.38 -6.77 16 22 H -0.30 -7.89 7.11 56.52 0.40 -7.49 16 23 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 24 C -0.22 -2.41 4.80 -105.05 -0.50 -2.92 16 25 C 0.05 0.57 11.54 -17.37 -0.20 0.37 16 26 N -0.30 -3.54 12.58 30.62 0.39 -3.16 16 27 N -0.38 -3.76 4.01 -68.17 -0.27 -4.04 16 28 C 0.10 0.58 11.47 59.85 0.69 1.27 16 29 C 0.06 0.57 11.38 -17.22 -0.20 0.37 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.08 1.14 5.95 -51.93 -0.31 0.83 16 32 H 0.05 0.48 8.02 -51.93 -0.42 0.06 16 33 H 0.09 0.96 7.40 -51.93 -0.38 0.57 16 34 H 0.09 0.79 8.11 -51.93 -0.42 0.37 16 35 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.08 0.69 7.11 -51.92 -0.37 0.33 16 37 H 0.07 0.58 6.44 -51.93 -0.33 0.25 16 38 H 0.07 0.88 8.07 -51.93 -0.42 0.46 16 39 H 0.09 1.59 7.42 -51.93 -0.39 1.20 16 40 H 0.35 4.39 8.78 45.56 0.40 4.79 16 41 H 0.04 0.72 8.07 -51.93 -0.42 0.30 16 42 H 0.06 1.48 3.37 -51.93 -0.17 1.30 16 43 H 0.00 0.03 8.14 -51.93 -0.42 -0.39 16 44 H 0.04 0.84 8.04 -51.93 -0.42 0.42 16 45 H 0.03 0.56 6.87 -51.93 -0.36 0.20 16 46 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 47 H 0.18 1.44 8.06 -52.49 -0.42 1.01 16 48 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 49 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 50 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 51 H 0.17 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 407.08 15.07 6.13 6.13 Total: -1.00 -37.57 407.08 -5.74 -43.31 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -7.81 Total: 4.24 kcal Atomic # 6 Polarization: 5.70 SS G_CDS: 0.57 Total: 6.27 kcal Atomic # 7 Polarization: -58.55 SS G_CDS: -0.06 Total: -58.61 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: -0.31 Total: -19.77 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -4.27 Total: 18.44 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -37.57 -5.74 -43.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507673953.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.961 kcal (2) G-P(sol) polarization free energy of solvation -37.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.50 seconds