Wall clock time and date at job start Tue Mar 31 2020 22:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47077 * 2 1 4 4 C 1.52998 * 109.46925 * 240.00026 * 2 1 3 5 5 C 1.50696 * 109.47284 * 65.00309 * 4 2 1 6 6 O 1.21276 * 120.00019 * 359.97438 * 5 4 2 7 7 N 1.34780 * 120.00019 * 180.02562 * 5 4 2 8 8 C 1.46499 * 119.99975 * 359.97438 * 7 5 4 9 9 C 1.46499 * 119.99921 * 179.97438 * 7 5 4 10 10 C 1.53008 * 109.47039 * 89.99921 * 9 7 5 11 11 H 1.08997 * 109.46771 * 304.99449 * 10 9 7 12 12 O 1.42896 * 109.47076 * 65.00153 * 10 9 7 13 13 C 1.52996 * 109.46670 * 184.99836 * 10 9 7 14 14 N 1.46503 * 109.46811 * 180.02562 * 13 10 9 15 15 C 1.46499 * 120.00205 * 90.00138 * 14 13 10 16 16 C 1.36950 * 119.99704 * 269.99861 * 14 13 10 17 17 H 1.08000 * 119.99200 * 142.09594 * 16 14 13 18 18 C 1.38801 * 120.00068 * 322.09633 * 16 14 13 19 19 N 1.31618 * 120.00143 * 157.11405 * 18 16 14 20 20 Si 1.86808 * 120.00027 * 337.10933 * 18 16 14 21 21 H 1.48510 * 109.46800 * 95.73683 * 20 18 16 22 22 H 1.48504 * 109.47209 * 215.73174 * 20 18 16 23 23 H 1.48490 * 109.47134 * 335.73605 * 20 18 16 24 24 C 1.50705 * 109.47027 * 119.99922 * 2 1 3 25 25 C 1.39868 * 126.04055 * 60.02489 * 24 2 1 26 26 N 1.30833 * 108.20285 * 179.97438 * 25 24 2 27 27 N 1.40083 * 108.20572 * 0.02562 * 26 25 24 28 28 C 1.46501 * 126.03711 * 179.73418 * 27 26 25 29 29 C 1.34951 * 107.92405 * 0.02562 * 27 26 25 30 30 H 1.09006 * 109.46934 * 300.00346 * 1 2 3 31 31 H 1.09005 * 109.46685 * 59.99980 * 1 2 3 32 32 H 1.08997 * 109.47077 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.47108 * 185.00300 * 4 2 1 34 34 H 1.08999 * 109.47308 * 304.99575 * 4 2 1 35 35 H 1.09000 * 109.46950 * 90.00286 * 8 7 5 36 36 H 1.09007 * 109.47199 * 210.00260 * 8 7 5 37 37 H 1.08998 * 109.47276 * 330.00450 * 8 7 5 38 38 H 1.09006 * 109.47089 * 209.99315 * 9 7 5 39 39 H 1.08995 * 109.47244 * 329.99890 * 9 7 5 40 40 H 0.96697 * 114.00466 * 59.99354 * 12 10 9 41 41 H 1.08995 * 109.47775 * 299.99847 * 13 10 9 42 42 H 1.08998 * 109.47311 * 60.00135 * 13 10 9 43 43 H 1.08997 * 109.47027 * 89.56213 * 15 14 13 44 44 H 1.09002 * 109.46707 * 209.56113 * 15 14 13 45 45 H 1.08997 * 109.46765 * 329.55724 * 15 14 13 46 46 H 0.97005 * 120.00417 * 179.97438 * 19 18 16 47 47 H 1.07998 * 125.89764 * 359.97438 * 25 24 2 48 48 H 1.09002 * 109.46818 * 90.02503 * 28 27 26 49 49 H 1.08993 * 109.47075 * 210.02275 * 28 27 26 50 50 H 1.08995 * 109.47193 * 330.02426 * 28 27 26 51 51 H 1.08002 * 126.12350 * 180.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6414 0.0571 -2.4766 6 8 1.0110 1.0869 -2.3633 7 7 1.9845 -0.3919 -3.7002 8 6 2.7454 -1.6363 -3.8370 9 6 1.5965 0.3644 -4.8933 10 6 2.6941 1.3736 -5.2367 11 1 2.8935 2.0027 -4.3692 12 8 3.8857 0.6751 -5.6029 13 6 2.2356 2.2475 -6.4058 14 7 3.2867 3.2134 -6.7350 15 6 4.3175 2.8680 -7.7171 16 6 3.3057 4.4393 -6.1248 17 1 4.2471 4.8888 -5.8455 18 6 2.1151 5.1039 -5.8653 19 7 2.0638 6.0171 -4.9189 20 14 0.5853 4.7022 -6.8594 21 1 -0.2377 3.7099 -6.1222 22 1 -0.2059 5.9408 -7.0726 23 1 0.9833 4.1367 -8.1735 24 6 2.0323 -0.7104 1.2305 25 6 1.7739 -2.0410 1.5757 26 7 2.3783 -2.2942 2.7081 27 7 3.0409 -1.1308 3.1203 28 6 3.8359 -0.9785 4.3413 29 6 2.8123 -0.1735 2.1971 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 3.1263 -0.7995 -1.2056 34 1 1.6054 -1.7198 -1.2951 35 1 2.0559 -2.4762 -3.9223 36 1 3.3680 -1.5851 -4.7303 37 1 3.3784 -1.7734 -2.9604 38 1 1.4590 -0.3213 -5.7294 39 1 0.6635 0.8939 -4.7004 40 1 3.7818 0.0947 -6.3693 41 1 2.0360 1.6186 -7.2733 42 1 1.3266 2.7803 -6.1266 43 1 3.9825 3.1584 -8.7128 44 1 5.2404 3.3956 -7.4759 45 1 4.4966 1.7931 -7.6929 46 1 1.2318 6.4818 -4.7377 47 1 1.1783 -2.7388 1.0059 48 1 4.8739 -1.2384 4.1338 49 1 3.7816 0.0549 4.6836 50 1 3.4437 -1.6385 5.1150 51 1 3.1863 0.8394 2.2241 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507673953.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:19 Heat of formation + Delta-G solvation = -5.867733 kcal Electronic energy + Delta-G solvation = -30303.959625 eV Core-core repulsion = 26240.347152 eV Total energy + Delta-G solvation = -4063.612473 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -42.20059 -41.02589 -39.12041 -36.97626 -36.21290 -35.86329 -33.69338 -33.63866 -31.85997 -30.57392 -29.11245 -28.14843 -27.74433 -27.35790 -26.35664 -23.92436 -23.12737 -22.61936 -21.98926 -20.76855 -19.87148 -18.97032 -18.18726 -17.57489 -17.31731 -17.30200 -16.86561 -16.50273 -16.30554 -16.22015 -15.48517 -15.47390 -15.22444 -15.09527 -14.69257 -14.43145 -14.37061 -14.09918 -13.86076 -13.75038 -13.64562 -13.51894 -13.34729 -13.22626 -13.12458 -13.09312 -12.66248 -12.64028 -12.41844 -12.35035 -12.08258 -12.02038 -11.94623 -11.89793 -11.60368 -11.35590 -11.29443 -10.68732 -10.58078 -10.34651 -9.50839 -9.29041 -8.66372 -8.23149 -5.59523 0.95737 1.27391 1.36393 1.48950 1.70300 1.72073 1.84053 2.16117 2.39572 2.98927 3.42258 3.54898 3.62123 3.75060 3.94168 4.02969 4.09227 4.15098 4.22358 4.31057 4.37983 4.40414 4.43888 4.45773 4.52464 4.66779 4.68986 4.69371 4.72117 4.74605 4.76842 4.84799 4.86079 4.88864 5.02348 5.08370 5.09814 5.15528 5.21635 5.28423 5.43884 5.47486 5.63468 5.75810 5.91643 6.12875 6.13286 6.50030 6.75655 6.96413 7.04568 7.31700 7.62935 8.03246 8.97176 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.014834 B = 0.002658 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.115746 B =10529.817530 C =11058.805241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.009 3.991 3 H 0.055 0.945 4 C -0.114 4.114 5 C 0.496 3.504 6 O -0.584 6.584 7 N -0.610 5.610 8 C 0.076 3.924 9 C 0.090 3.910 10 C 0.098 3.902 11 H 0.042 0.958 12 O -0.553 6.553 13 C 0.106 3.894 14 N -0.617 5.617 15 C 0.130 3.870 16 C -0.263 4.263 17 H 0.031 0.969 18 C -0.025 4.025 19 N -0.949 5.949 20 Si 0.947 3.053 21 H -0.275 1.275 22 H -0.307 1.307 23 H -0.250 1.250 24 C -0.237 4.237 25 C 0.055 3.945 26 N -0.331 5.331 27 N -0.382 5.382 28 C 0.094 3.906 29 C 0.053 3.947 30 H 0.046 0.954 31 H 0.047 0.953 32 H 0.067 0.933 33 H 0.101 0.899 34 H 0.121 0.879 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.120 0.880 39 H 0.061 0.939 40 H 0.380 0.620 41 H 0.086 0.914 42 H 0.033 0.967 43 H 0.014 0.986 44 H 0.026 0.974 45 H 0.072 0.928 46 H 0.262 0.738 47 H 0.201 0.799 48 H 0.085 0.915 49 H 0.108 0.892 50 H 0.091 0.909 51 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.961 -24.084 10.283 26.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.011 4.011 3 H 0.073 0.927 4 C -0.154 4.154 5 C 0.286 3.714 6 O -0.464 6.464 7 N -0.342 5.342 8 C -0.066 4.066 9 C -0.035 4.035 10 C 0.035 3.965 11 H 0.061 0.939 12 O -0.360 6.360 13 C -0.020 4.020 14 N -0.341 5.341 15 C -0.014 4.014 16 C -0.393 4.393 17 H 0.049 0.951 18 C -0.221 4.221 19 N -0.593 5.593 20 Si 0.775 3.225 21 H -0.203 1.203 22 H -0.235 1.235 23 H -0.174 1.174 24 C -0.248 4.248 25 C -0.131 4.131 26 N -0.153 5.153 27 N -0.165 5.165 28 C -0.046 4.046 29 C -0.094 4.094 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.086 0.914 33 H 0.119 0.881 34 H 0.139 0.861 35 H 0.097 0.903 36 H 0.103 0.897 37 H 0.098 0.902 38 H 0.138 0.862 39 H 0.079 0.921 40 H 0.229 0.771 41 H 0.105 0.895 42 H 0.051 0.949 43 H 0.032 0.968 44 H 0.045 0.955 45 H 0.090 0.910 46 H 0.071 0.929 47 H 0.218 0.782 48 H 0.103 0.897 49 H 0.126 0.874 50 H 0.110 0.890 51 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 1.185 -24.006 11.940 26.838 hybrid contribution -1.034 1.369 -1.101 2.038 sum 0.152 -22.637 10.840 25.099 Atomic orbital electron populations 1.21829 0.94579 1.01983 1.01289 1.18985 0.95630 0.97222 0.89263 0.92668 1.21710 1.03316 1.00445 0.89897 1.21490 0.78604 0.85321 0.85949 1.90716 1.42180 1.26629 1.86870 1.47906 1.55460 1.25709 1.05104 1.22073 0.96116 0.83825 1.04542 1.22106 0.97274 0.95211 0.88863 1.22499 0.85462 0.91598 0.96974 0.93931 1.86610 1.34459 1.62352 1.52535 1.21902 0.91330 0.91870 0.96918 1.43978 1.31597 1.11931 1.46591 1.21160 0.90532 0.99549 0.90163 1.18642 0.92538 0.95535 1.32608 0.95137 1.26162 1.01571 0.96362 0.98010 1.70027 1.28036 1.30206 1.31024 0.85787 0.79581 0.76120 0.81009 1.20252 1.23546 1.17372 1.19998 1.08736 0.95619 1.00470 1.24038 0.98940 0.96198 0.93874 1.77269 1.14616 1.07388 1.16039 1.48751 1.40189 1.07728 1.19802 1.22150 0.94747 1.05143 0.82601 1.22763 0.99564 0.96497 0.90547 0.93461 0.93372 0.91362 0.88063 0.86055 0.90313 0.89669 0.90176 0.86192 0.92082 0.77150 0.89549 0.94911 0.96818 0.95503 0.90955 0.92937 0.78201 0.89686 0.87371 0.88982 0.79292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.40 8.82 71.98 0.64 -2.77 16 2 C 0.01 0.22 2.40 -11.54 -0.03 0.19 16 3 H 0.05 1.60 7.92 -2.39 -0.02 1.59 16 4 C -0.11 -2.39 3.58 29.85 0.11 -2.28 16 5 C 0.50 14.98 7.39 87.66 0.65 15.62 16 6 O -0.58 -24.11 13.54 -3.02 -0.04 -24.15 16 7 N -0.61 -15.53 2.84 -846.75 -2.40 -17.93 16 8 C 0.08 1.12 10.06 127.77 1.29 2.41 16 9 C 0.09 2.59 5.07 86.38 0.44 3.03 16 10 C 0.10 3.60 3.48 30.60 0.11 3.71 16 11 H 0.04 2.14 8.14 -2.39 -0.02 2.12 16 12 O -0.55 -16.80 10.88 -148.98 -1.62 -18.42 16 13 C 0.11 4.32 4.21 86.38 0.36 4.69 16 14 N -0.62 -29.67 2.39 -726.95 -1.74 -31.41 16 15 C 0.13 5.03 10.44 127.77 1.33 6.37 16 16 C -0.26 -15.82 9.90 84.03 0.83 -14.99 16 17 H 0.03 2.07 8.06 -2.91 -0.02 2.04 16 18 C -0.02 -1.52 5.29 84.86 0.45 -1.07 16 19 N -0.95 -62.95 13.97 21.65 0.30 -62.65 16 20 Si 0.95 48.06 25.09 68.60 1.72 49.78 16 21 H -0.28 -13.47 6.68 99.48 0.66 -12.80 16 22 H -0.31 -15.74 7.11 99.48 0.71 -15.03 16 23 H -0.25 -11.71 7.11 99.48 0.71 -11.00 16 24 C -0.24 -4.85 4.80 -20.14 -0.10 -4.95 16 25 C 0.05 1.05 11.54 85.24 0.98 2.04 16 26 N -0.33 -7.29 12.58 -57.03 -0.72 -8.00 16 27 N -0.38 -7.07 4.01 -369.57 -1.48 -8.55 16 28 C 0.09 0.91 11.47 127.77 1.47 2.38 16 29 C 0.05 1.01 11.38 83.54 0.95 1.96 16 30 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 31 H 0.05 1.48 5.95 -2.38 -0.01 1.47 16 32 H 0.07 1.32 8.02 -2.39 -0.02 1.30 16 33 H 0.10 1.94 7.40 -2.38 -0.02 1.92 16 34 H 0.12 1.74 8.11 -2.39 -0.02 1.72 16 35 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.08 1.14 7.11 -2.38 -0.02 1.12 16 37 H 0.08 1.04 6.44 -2.39 -0.02 1.02 16 38 H 0.12 2.31 8.07 -2.38 -0.02 2.29 16 39 H 0.06 2.15 7.42 -2.39 -0.02 2.13 16 40 H 0.38 7.36 8.78 -74.06 -0.65 6.70 16 41 H 0.09 2.73 8.07 -2.39 -0.02 2.71 16 42 H 0.03 1.55 3.37 -2.39 -0.01 1.54 16 43 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 44 H 0.03 1.08 8.04 -2.39 -0.02 1.07 16 45 H 0.07 2.20 6.87 -2.39 -0.02 2.18 16 46 H 0.26 16.48 8.31 -92.70 -0.77 15.70 16 47 H 0.20 2.66 8.06 -2.91 -0.02 2.64 16 48 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 49 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 50 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 51 H 0.19 2.79 8.06 -2.91 -0.02 2.77 16 Total: -1.00 -89.20 407.08 3.72 -85.48 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: 0.23 Total: 19.52 kcal Atomic # 6 Polarization: 6.85 SS G_CDS: 9.47 Total: 16.33 kcal Atomic # 7 Polarization: -122.50 SS G_CDS: -6.04 Total: -128.54 kcal Atomic # 8 Polarization: -40.90 SS G_CDS: -1.66 Total: -42.56 kcal Atomic # 14 Polarization: 48.06 SS G_CDS: 1.72 Total: 49.78 kcal Total: -89.20 3.72 -85.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507673953.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.612 kcal (2) G-P(sol) polarization free energy of solvation -89.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds