Wall clock time and date at job start Tue Mar 31 2020 22:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47726 * 2 1 4 4 C 1.53000 * 109.47037 * 120.00104 * 2 1 3 5 5 C 1.50694 * 109.47435 * 294.99798 * 4 2 1 6 6 C 1.39866 * 126.03959 * 269.69252 * 5 4 2 7 7 N 1.30834 * 108.20306 * 179.81373 * 6 5 4 8 8 N 1.40090 * 108.20720 * 0.43796 * 7 6 5 9 9 C 1.46497 * 126.03780 * 179.69732 * 8 7 6 10 10 C 1.34943 * 107.91991 * 359.72020 * 8 7 6 11 11 C 1.50707 * 109.46753 * 240.00134 * 2 1 3 12 12 O 1.21286 * 119.99452 * 239.99950 * 11 2 1 13 13 N 1.34769 * 120.00310 * 60.00663 * 11 2 1 14 14 C 1.46510 * 119.99572 * 359.97438 * 13 11 2 15 15 C 1.46500 * 120.00165 * 180.02562 * 13 11 2 16 16 C 1.53004 * 109.47201 * 89.99472 * 15 13 11 17 17 H 1.08999 * 109.47065 * 60.00322 * 16 15 13 18 18 O 1.42893 * 109.46856 * 299.99959 * 16 15 13 19 19 C 1.52997 * 109.46680 * 180.02562 * 16 15 13 20 20 N 1.46507 * 109.46823 * 185.00168 * 19 16 15 21 21 C 1.46497 * 120.00169 * 90.00383 * 20 19 16 22 22 C 1.36938 * 119.99401 * 269.99773 * 20 19 16 23 23 H 1.07995 * 120.00195 * 22.93270 * 22 20 19 24 24 C 1.38814 * 119.99461 * 202.92537 * 22 20 19 25 25 N 1.31614 * 120.00129 * 13.13036 * 24 22 20 26 26 Si 1.86800 * 119.99733 * 193.12476 * 24 22 20 27 27 H 1.48498 * 109.47553 * 0.02562 * 26 24 22 28 28 H 1.48502 * 109.46912 * 120.00803 * 26 24 22 29 29 H 1.48504 * 109.47301 * 240.00082 * 26 24 22 30 30 H 1.08990 * 109.47391 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46759 * 300.00045 * 1 2 3 32 32 H 1.09004 * 109.47104 * 59.99432 * 1 2 3 33 33 H 1.09007 * 109.47222 * 54.99873 * 4 2 1 34 34 H 1.09000 * 109.46816 * 174.99323 * 4 2 1 35 35 H 1.08005 * 125.90207 * 359.97438 * 6 5 4 36 36 H 1.09005 * 109.47073 * 270.02540 * 9 8 7 37 37 H 1.08998 * 109.47170 * 30.02284 * 9 8 7 38 38 H 1.08997 * 109.47046 * 150.03106 * 9 8 7 39 39 H 1.08003 * 126.12973 * 180.02562 * 10 8 7 40 40 H 1.08997 * 109.46883 * 270.00421 * 14 13 11 41 41 H 1.08997 * 109.46841 * 30.00884 * 14 13 11 42 42 H 1.09000 * 109.46630 * 150.00677 * 14 13 11 43 43 H 1.08999 * 109.46848 * 329.99661 * 15 13 11 44 44 H 1.09001 * 109.46648 * 209.99382 * 15 13 11 45 45 H 0.96704 * 114.00402 * 299.99726 * 18 16 15 46 46 H 1.09000 * 109.47146 * 304.99857 * 19 16 15 47 47 H 1.09003 * 109.47133 * 65.00196 * 19 16 15 48 48 H 1.08993 * 109.47540 * 95.12205 * 21 20 19 49 49 H 1.08998 * 109.46578 * 215.12637 * 21 20 19 50 50 H 1.09000 * 109.46969 * 335.12094 * 21 20 19 51 51 H 0.97002 * 119.99950 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6414 0.0569 2.4766 6 6 2.3928 1.0625 3.0934 7 7 1.7182 1.5027 4.1243 8 7 0.5188 0.7832 4.2022 9 6 -0.5258 0.9559 5.2148 10 6 0.4958 -0.0975 3.1801 11 6 2.0323 -0.7104 -1.2306 12 8 2.7295 -1.6966 -1.1192 13 7 1.7068 -0.2499 -2.4546 14 6 0.8642 0.9411 -2.5889 15 6 2.1946 -0.9409 -3.6508 16 6 1.1862 -2.0137 -4.0669 17 1 0.2262 -1.5454 -4.2840 18 8 1.0272 -2.9557 -3.0043 19 6 1.6960 -2.7357 -5.3158 20 7 0.6781 -3.6796 -5.7839 21 6 -0.3357 -3.2452 -6.7481 22 6 0.6744 -4.9681 -5.3201 23 1 1.1443 -5.2038 -4.3768 24 6 0.0665 -5.9712 -6.0626 25 7 -0.2753 -5.7485 -7.3139 26 14 -0.2664 -7.6370 -5.2856 27 1 0.2088 -7.6309 -3.8788 28 1 -1.7251 -7.9137 -5.3139 29 1 0.4520 -8.6906 -6.0467 30 1 -0.3633 -1.0275 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.6053 -1.7199 1.2952 34 1 3.1263 -0.7996 1.2055 35 1 3.3614 1.4164 2.7724 36 1 -0.3251 0.2974 6.0599 37 1 -0.5342 1.9914 5.5551 38 1 -1.4952 0.7075 4.7828 39 1 -0.2954 -0.7997 2.9621 40 1 -0.1837 0.6428 -2.6224 41 1 1.0275 1.5997 -1.7360 42 1 1.1219 1.4666 -3.5084 43 1 3.1546 -1.4092 -3.4337 44 1 2.3158 -0.2222 -4.4613 45 1 1.8435 -3.4118 -2.7575 46 1 1.9021 -2.0058 -6.0987 47 1 2.6105 -3.2776 -5.0744 48 1 -0.0109 -3.5006 -7.7567 49 1 -1.2798 -3.7455 -6.5327 50 1 -0.4706 -2.1663 -6.6721 51 1 -0.6997 -6.4496 -7.8328 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507714649.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:23 Heat of formation + Delta-G solvation = 23.314752 kcal Electronic energy + Delta-G solvation = -30171.882570 eV Core-core repulsion = 26109.535544 eV Total energy + Delta-G solvation = -4062.347025 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 3.35 seconds Orbital eigenvalues (eV) -41.49955 -40.04552 -37.28425 -35.34859 -35.25496 -34.39691 -33.24364 -31.32956 -30.59590 -29.32637 -28.01055 -27.01148 -26.06610 -25.75412 -25.39143 -23.05653 -21.68235 -21.27265 -20.38879 -20.27384 -18.90445 -17.33088 -16.80605 -16.62977 -16.23424 -15.78546 -15.57720 -15.12970 -14.80223 -14.78736 -14.58797 -14.37252 -13.77232 -13.54148 -13.40471 -13.33840 -13.18687 -13.02476 -12.86028 -12.75250 -12.59083 -12.42863 -12.26709 -11.86495 -11.78453 -11.47893 -11.19210 -11.14055 -10.97833 -10.79243 -10.67623 -10.56963 -10.47939 -10.31615 -9.86605 -9.81999 -9.67784 -9.60132 -9.42365 -8.57823 -8.52213 -8.27419 -6.60054 -5.61108 -3.05970 1.62960 2.25434 2.53859 2.82322 3.15653 3.45921 3.53008 3.57362 4.21062 4.49632 4.59277 4.60178 4.75354 4.79292 4.86831 4.92232 4.97345 5.01137 5.13315 5.19927 5.25967 5.31757 5.35581 5.46399 5.50347 5.55163 5.56243 5.59825 5.74445 5.75730 5.80450 5.94503 6.01964 6.06444 6.11005 6.15242 6.19764 6.43285 6.53936 6.63800 6.74112 6.75259 6.86703 7.42402 7.44166 7.50726 7.77616 7.96073 8.36454 8.46833 8.55787 9.34796 9.97290 10.45687 11.44230 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.016660 B = 0.002354 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.278384 B =11892.043938 C =12766.904085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.100 4.100 3 H 0.091 0.909 4 C -0.021 4.021 5 C -0.228 4.228 6 C 0.052 3.948 7 N -0.301 5.301 8 N -0.380 5.380 9 C 0.102 3.898 10 C 0.058 3.942 11 C 0.523 3.477 12 O -0.535 6.535 13 N -0.609 5.609 14 C 0.077 3.923 15 C 0.081 3.919 16 C 0.074 3.926 17 H 0.083 0.917 18 O -0.541 6.541 19 C 0.124 3.876 20 N -0.594 5.594 21 C 0.163 3.837 22 C -0.234 4.234 23 H 0.070 0.930 24 C -0.006 4.006 25 N -0.914 5.914 26 Si 0.903 3.097 27 H -0.277 1.277 28 H -0.292 1.292 29 H -0.293 1.293 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.182 0.818 36 H 0.073 0.927 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.173 0.827 40 H 0.059 0.941 41 H 0.071 0.929 42 H 0.068 0.932 43 H 0.083 0.917 44 H 0.078 0.922 45 H 0.368 0.632 46 H 0.041 0.959 47 H 0.051 0.949 48 H 0.031 0.969 49 H 0.040 0.960 50 H -0.006 1.006 51 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.945 19.019 19.136 26.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.122 4.122 3 H 0.109 0.891 4 C -0.060 4.060 5 C -0.240 4.240 6 C -0.134 4.134 7 N -0.123 5.123 8 N -0.162 5.162 9 C -0.039 4.039 10 C -0.088 4.088 11 C 0.311 3.689 12 O -0.412 6.412 13 N -0.342 5.342 14 C -0.066 4.066 15 C -0.043 4.043 16 C 0.010 3.990 17 H 0.101 0.899 18 O -0.345 6.345 19 C -0.004 4.004 20 N -0.316 5.316 21 C 0.019 3.981 22 C -0.364 4.364 23 H 0.088 0.912 24 C -0.203 4.203 25 N -0.561 5.561 26 Si 0.734 3.266 27 H -0.203 1.203 28 H -0.219 1.219 29 H -0.220 1.220 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.198 0.802 36 H 0.092 0.908 37 H 0.106 0.894 38 H 0.105 0.895 39 H 0.190 0.810 40 H 0.077 0.923 41 H 0.089 0.911 42 H 0.087 0.913 43 H 0.101 0.899 44 H 0.096 0.904 45 H 0.215 0.785 46 H 0.059 0.941 47 H 0.069 0.931 48 H 0.049 0.951 49 H 0.059 0.941 50 H 0.012 0.988 51 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 0.456 19.420 20.123 27.969 hybrid contribution 0.076 -1.522 -0.447 1.588 sum 0.533 17.898 19.677 26.604 Atomic orbital electron populations 1.22038 0.93198 1.03190 1.02693 1.21226 0.97681 1.00342 0.92906 0.89143 1.19669 1.01532 0.97181 0.87606 1.20100 0.96521 1.04654 1.02698 1.23824 1.00050 0.96180 0.93363 1.77339 0.94120 1.19073 1.21745 1.48451 1.16014 1.28774 1.22965 1.21840 0.87858 1.04099 0.90150 1.22395 1.00178 0.96095 0.90132 1.20511 0.79773 0.84374 0.84192 1.90657 1.38254 1.25955 1.86300 1.47699 1.51527 1.28826 1.06117 1.21940 0.95041 0.87140 1.02461 1.22394 0.99364 0.96191 0.86330 1.23119 0.98168 0.88372 0.89360 0.89858 1.86536 1.37457 1.57035 1.53514 1.21343 0.92604 0.92928 0.93565 1.43761 1.29677 1.07907 1.50244 1.20784 0.92406 0.91684 0.93257 1.19243 1.32984 0.83347 1.00804 0.91207 1.25007 1.02344 0.97770 0.95197 1.70078 1.46378 1.32715 1.06881 0.86184 0.77544 0.84181 0.78702 1.20251 1.21868 1.21993 0.91842 0.91958 0.91369 0.90566 0.90364 0.80151 0.90834 0.89403 0.89473 0.81005 0.92262 0.91077 0.91334 0.89869 0.90401 0.78542 0.94081 0.93106 0.95081 0.94141 0.98752 0.94064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 8.54 37.16 0.32 -1.10 16 2 C -0.10 -1.01 1.91 -91.77 -0.18 -1.18 16 3 H 0.09 0.78 7.40 -51.93 -0.38 0.40 16 4 C -0.02 -0.22 4.52 -27.89 -0.13 -0.34 16 5 C -0.23 -2.18 4.82 -105.06 -0.51 -2.68 16 6 C 0.05 0.51 11.96 -17.37 -0.21 0.30 16 7 N -0.30 -3.29 12.58 30.62 0.39 -2.91 16 8 N -0.38 -3.36 4.01 -68.16 -0.27 -3.63 16 9 C 0.10 0.49 11.47 59.85 0.69 1.17 16 10 C 0.06 0.49 10.02 -17.22 -0.17 0.32 16 11 C 0.52 7.05 6.58 -10.99 -0.07 6.98 16 12 O -0.54 -9.06 14.29 -3.16 -0.05 -9.10 16 13 N -0.61 -7.52 2.83 -181.56 -0.51 -8.04 16 14 C 0.08 0.68 8.85 59.85 0.53 1.21 16 15 C 0.08 1.10 5.19 -4.04 -0.02 1.08 16 16 C 0.07 1.29 3.48 -26.73 -0.09 1.20 16 17 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 18 O -0.54 -10.96 11.38 -43.94 -0.50 -11.46 16 19 C 0.12 2.51 5.32 -4.04 -0.02 2.48 16 20 N -0.59 -15.15 2.90 -181.12 -0.53 -15.68 16 21 C 0.16 4.10 8.98 59.85 0.54 4.63 16 22 C -0.23 -6.60 9.21 -15.06 -0.14 -6.74 16 23 H 0.07 1.96 7.58 -52.49 -0.40 1.57 16 24 C -0.01 -0.18 5.10 -17.43 -0.09 -0.27 16 25 N -0.91 -27.44 10.71 55.49 0.59 -26.85 16 26 Si 0.90 22.86 29.57 -169.99 -5.03 17.83 16 27 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 28 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 29 H -0.29 -7.41 7.11 56.52 0.40 -7.00 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.50 6.42 -51.93 -0.33 0.17 16 32 H 0.07 0.59 4.53 -51.93 -0.24 0.35 16 33 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.08 0.86 7.95 -51.93 -0.41 0.45 16 35 H 0.18 1.33 8.06 -52.48 -0.42 0.91 16 36 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 39 H 0.17 1.08 8.06 -52.48 -0.42 0.66 16 40 H 0.06 0.54 6.95 -51.93 -0.36 0.18 16 41 H 0.07 0.49 6.01 -51.93 -0.31 0.18 16 42 H 0.07 0.51 7.89 -51.93 -0.41 0.10 16 43 H 0.08 1.22 7.42 -51.93 -0.39 0.83 16 44 H 0.08 0.88 7.89 -51.93 -0.41 0.47 16 45 H 0.37 7.20 8.45 45.56 0.38 7.59 16 46 H 0.04 0.75 8.07 -51.93 -0.42 0.33 16 47 H 0.05 1.04 8.04 -51.93 -0.42 0.62 16 48 H 0.03 0.84 7.34 -51.93 -0.38 0.46 16 49 H 0.04 1.10 7.34 -51.93 -0.38 0.72 16 50 H -0.01 -0.13 8.03 -51.93 -0.42 -0.55 16 51 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 406.15 15.07 6.12 6.12 Total: -1.00 -36.25 406.15 -7.13 -43.38 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -7.79 Total: 3.28 kcal Atomic # 6 Polarization: 6.61 SS G_CDS: 0.45 Total: 7.06 kcal Atomic # 7 Polarization: -56.77 SS G_CDS: -0.33 Total: -57.10 kcal Atomic # 8 Polarization: -20.02 SS G_CDS: -0.55 Total: -20.56 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -5.03 Total: 17.83 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -36.25 -7.13 -43.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507714649.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.697 kcal (2) G-P(sol) polarization free energy of solvation -36.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.35 seconds