Wall clock time and date at job start Tue Mar 31 2020 22:48:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 H 1.08997 * 109.47704 * 2 1
4 4 C 1.50705 * 109.46910 * 240.00032 * 2 1 3
5 5 H 1.08003 * 119.99952 * 240.00494 * 4 2 1
6 6 C 1.37875 * 120.00077 * 60.00286 * 4 2 1
7 7 N 1.31519 * 119.99787 * 359.97438 * 6 4 2
8 8 Si 1.86796 * 120.00097 * 180.02562 * 6 4 2
9 9 H 1.48496 * 109.47608 * 59.99727 * 8 6 4
10 10 H 1.48501 * 109.47118 * 180.02562 * 8 6 4
11 11 H 1.48506 * 109.47052 * 299.99626 * 8 6 4
12 12 N 1.46904 * 109.47042 * 120.00355 * 2 1 3
13 13 C 1.46894 * 110.99974 * 176.04211 * 12 2 1
14 14 C 1.38579 * 110.99682 * 299.99777 * 12 2 1
15 15 N 1.31209 * 126.47755 * 339.55925 * 14 12 2
16 16 N 1.28521 * 109.86510 * 179.97438 * 15 14 12
17 17 C 1.30298 * 110.05229 * 0.02562 * 16 15 14
18 18 C 1.50703 * 126.34501 * 179.97438 * 17 16 15
19 19 H 1.09002 * 110.45156 * 177.41746 * 18 17 16
20 20 C 1.54502 * 110.51405 * 300.02167 * 18 17 16
21 21 C 1.54479 * 104.06338 * 118.64826 * 20 18 17
22 22 O 1.44426 * 104.80162 * 23.98034 * 21 20 18
23 23 C 1.44426 * 105.27616 * 319.48795 * 22 21 20
24 24 N 1.36455 * 126.47016 * 159.25249 * 14 12 2
25 25 C 1.46499 * 127.13573 * 0.02954 * 24 14 12
26 26 C 1.52994 * 109.47580 * 274.06664 * 25 24 14
27 27 C 1.52999 * 109.47566 * 179.78145 * 26 25 24
28 28 C 1.53004 * 109.47211 * 299.78156 * 26 25 24
29 29 O 1.42902 * 109.47350 * 59.77800 * 26 25 24
30 30 H 1.08997 * 109.47704 * 179.97438 * 1 2 3
31 31 H 1.09004 * 109.47551 * 299.99809 * 1 2 3
32 32 H 1.09005 * 109.47258 * 59.99405 * 1 2 3
33 33 H 0.97005 * 119.99861 * 179.97438 * 7 6 4
34 34 H 1.08998 * 109.47053 * 179.97438 * 13 12 2
35 35 H 1.08996 * 109.47310 * 59.93509 * 13 12 2
36 36 H 1.09003 * 109.47647 * 299.93691 * 13 12 2
37 37 H 1.08997 * 110.51531 * 237.29781 * 20 18 17
38 38 H 1.09001 * 110.50939 * 359.87080 * 20 18 17
39 39 H 1.08993 * 110.37309 * 142.81538 * 21 20 18
40 40 H 1.09005 * 110.37122 * 265.04052 * 21 20 18
41 41 H 1.09005 * 110.37290 * 281.68134 * 23 22 21
42 42 H 1.08994 * 110.37363 * 159.34354 * 23 22 21
43 43 H 1.09002 * 109.47281 * 34.07005 * 25 24 14
44 44 H 1.09006 * 109.46517 * 154.06609 * 25 24 14
45 45 H 1.09001 * 109.47240 * 59.99464 * 27 26 25
46 46 H 1.09002 * 109.47275 * 180.02562 * 27 26 25
47 47 H 1.09007 * 109.46586 * 299.99787 * 27 26 25
48 48 H 1.08998 * 109.47377 * 63.52393 * 28 26 25
49 49 H 1.08997 * 109.47142 * 183.52722 * 28 26 25
50 50 H 1.09000 * 109.46806 * 303.52326 * 28 26 25
51 51 H 0.96700 * 113.99860 * 59.99569 * 29 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0323 -0.7104 -1.2305
5 1 2.6531 -1.5886 -1.1314
6 6 1.6992 -0.2394 -2.4828
7 7 0.9427 0.8297 -2.6034
8 14 2.3212 -1.1203 -4.0080
9 1 1.8257 -2.5202 -4.0078
10 1 1.8268 -0.4198 -5.2205
11 1 3.8063 -1.1209 -4.0082
12 7 2.0196 -0.6926 1.1994
13 6 3.4849 -0.7947 1.1870
14 6 1.5753 -0.0642 2.3519
15 7 1.1514 1.1735 2.4515
16 7 0.8165 1.4240 3.6668
17 6 1.0058 0.3697 4.4087
18 6 0.7350 0.2575 5.8869
19 1 0.9426 -0.7539 6.2365
20 6 1.5800 1.2856 6.6717
21 6 0.5309 2.1808 7.3676
22 8 -0.6530 1.3587 7.4595
23 6 -0.7248 0.6530 6.2014
24 7 1.4904 -0.6176 3.5963
25 6 1.8480 -1.9848 3.9824
26 6 0.6564 -2.9124 3.7369
27 6 1.0317 -4.3412 4.1351
28 6 -0.5348 -2.4454 4.5759
29 8 0.3052 -2.8805 2.3521
30 1 -0.3634 -1.0276 -0.0005
31 1 -0.3634 0.5138 0.8900
32 1 -0.3634 0.5139 -0.8900
33 1 0.7087 1.1614 -3.4844
34 1 3.8208 -1.3111 2.0862
35 1 3.9186 0.2048 1.1580
36 1 3.8028 -1.3543 0.3072
37 1 2.2037 0.7829 7.4109
38 1 2.1954 1.8736 5.9907
39 1 0.8741 2.4645 8.3624
40 1 0.3324 3.0692 6.7678
41 1 -1.1173 1.3060 5.4219
42 1 -1.3462 -0.2370 6.3005
43 1 2.6979 -2.3199 3.3877
44 1 2.1134 -2.0061 5.0395
45 1 1.2995 -4.3656 5.1914
46 1 0.1828 -5.0021 3.9598
47 1 1.8803 -4.6739 3.5373
48 1 -0.8419 -1.4518 4.2495
49 1 -1.3637 -3.1418 4.4493
50 1 -0.2474 -2.4099 5.6267
51 1 1.0148 -3.1646 1.7598
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001509954577.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:48:22
Heat of formation + Delta-G solvation = 2.076070 kcal
Electronic energy + Delta-G solvation = -32536.308301 eV
Core-core repulsion = 28473.040297 eV
Total energy + Delta-G solvation = -4063.268004 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.211 amu
Computer time = 3.09 seconds
Orbital eigenvalues (eV)
-42.63589 -39.35624 -38.39121 -37.04792 -34.34186 -33.23361 -32.57559 -31.97379
-29.83927 -29.21596 -28.33486 -27.50745 -26.93444 -25.38517 -24.31341 -23.48438
-22.39512 -21.66610 -20.84062 -19.82110 -19.20810 -17.57121 -16.55676 -16.38871
-16.35038 -16.07531 -15.51210 -15.21307 -15.08548 -15.02921 -14.72978 -14.40228
-14.05727 -13.61760 -13.34041 -13.06834 -12.80240 -12.75356 -12.43342 -12.38451
-12.13915 -12.11044 -11.88256 -11.81531 -11.64482 -11.48230 -11.20410 -11.08281
-11.00775 -10.97974 -10.89564 -10.65928 -10.34322 -10.29723 -10.15251 -10.03839
-9.93306 -9.85177 -9.41115 -9.18253 -8.58954 -8.42852 -7.44914 -6.02940
-4.10714 2.16644 2.60602 3.29021 3.34931 3.35450 3.36700 3.78117
4.15716 4.31824 4.35837 4.39885 4.46146 4.58702 4.59833 4.63531
4.82161 4.85524 4.92859 5.04585 5.12796 5.17791 5.28846 5.35461
5.48521 5.53718 5.58277 5.61517 5.65893 5.71107 5.75710 5.76113
5.77844 5.89752 5.93416 6.07859 6.08386 6.22364 6.37182 6.46892
6.61139 6.89322 7.04907 7.19701 7.29371 7.48263 7.73116 7.74678
7.88669 8.02582 8.28813 8.47294 8.90690 9.34348 9.53768 11.03243
Molecular weight = 338.21amu
Principal moments of inertia in cm(-1)
A = 0.015202 B = 0.003824 C = 0.003380
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1841.368315 B = 7320.509635 C = 8281.672799
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.129 4.129
2 C 0.232 3.768
3 H 0.021 0.979
4 C -0.516 4.516
5 H 0.063 0.937
6 C 0.065 3.935
7 N -0.883 5.883
8 Si 0.899 3.101
9 H -0.277 1.277
10 H -0.287 1.287
11 H -0.278 1.278
12 N -0.456 5.456
13 C 0.040 3.960
14 C 0.400 3.600
15 N -0.317 5.317
16 N -0.280 5.280
17 C 0.150 3.850
18 C -0.025 4.025
19 H 0.093 0.907
20 C -0.143 4.143
21 C 0.048 3.952
22 O -0.375 6.375
23 C 0.058 3.942
24 N -0.470 5.470
25 C 0.085 3.915
26 C 0.115 3.885
27 C -0.175 4.175
28 C -0.142 4.142
29 O -0.535 6.535
30 H 0.030 0.970
31 H 0.019 0.981
32 H 0.085 0.915
33 H 0.263 0.737
34 H 0.040 0.960
35 H 0.030 0.970
36 H 0.095 0.905
37 H 0.078 0.922
38 H 0.086 0.914
39 H 0.091 0.909
40 H 0.067 0.933
41 H 0.077 0.923
42 H 0.093 0.907
43 H 0.096 0.904
44 H 0.092 0.908
45 H 0.064 0.936
46 H 0.071 0.929
47 H 0.062 0.938
48 H 0.065 0.935
49 H 0.066 0.934
50 H 0.065 0.935
51 H 0.384 0.616
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.754 -7.571 19.308 20.921
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.187 4.187
2 C 0.128 3.872
3 H 0.039 0.961
4 C -0.554 4.554
5 H 0.081 0.919
6 C -0.138 4.138
7 N -0.521 5.521
8 Si 0.726 3.274
9 H -0.202 1.202
10 H -0.213 1.213
11 H -0.204 1.204
12 N -0.181 5.181
13 C -0.107 4.107
14 C 0.045 3.955
15 N -0.161 5.161
16 N -0.120 5.120
17 C -0.117 4.117
18 C -0.046 4.046
19 H 0.111 0.889
20 C -0.182 4.182
21 C -0.029 4.029
22 O -0.293 6.293
23 C -0.020 4.020
24 N -0.165 5.165
25 C -0.039 4.039
26 C 0.072 3.928
27 C -0.233 4.233
28 C -0.200 4.200
29 O -0.341 6.341
30 H 0.049 0.951
31 H 0.038 0.962
32 H 0.103 0.897
33 H 0.073 0.927
34 H 0.059 0.941
35 H 0.049 0.951
36 H 0.113 0.887
37 H 0.096 0.904
38 H 0.104 0.896
39 H 0.109 0.891
40 H 0.085 0.915
41 H 0.095 0.905
42 H 0.112 0.888
43 H 0.115 0.885
44 H 0.110 0.890
45 H 0.083 0.917
46 H 0.090 0.910
47 H 0.081 0.919
48 H 0.084 0.916
49 H 0.086 0.914
50 H 0.084 0.916
51 H 0.233 0.767
Dipole moment (debyes) X Y Z Total
from point charges 1.402 -6.315 19.112 20.177
hybrid contribution 1.721 -1.430 -1.009 2.455
sum 3.123 -7.745 18.103 19.937
Atomic orbital electron populations
1.21757 0.96763 0.99372 1.00792 1.19306 0.93109 0.92601 0.82150
0.96080 1.20995 1.32179 1.12696 0.89571 0.91901 1.24889 0.95023
0.94994 0.98909 1.69919 1.35899 1.22534 1.23703 0.86564 0.78950
0.79680 0.82168 1.20236 1.21296 1.20358 1.59163 1.09823 1.49844
0.99307 1.22311 0.85815 1.00881 1.01710 1.22946 0.99544 0.88006
0.85040 1.74826 1.20287 1.10795 1.10218 1.73898 1.17989 1.22180
0.97916 1.23971 1.05983 0.86785 0.94957 1.20780 0.97247 1.00921
0.85660 0.88924 1.22989 0.98582 0.97328 0.99282 1.23407 0.84374
0.94104 1.01008 1.89105 1.45349 1.59436 1.35424 1.23496 0.94313
0.97260 0.86916 1.45996 1.50707 1.11308 1.08516 1.22598 0.99302
0.80030 1.01965 1.21438 0.93581 0.92882 0.84862 1.22453 1.02676
0.96276 1.01930 1.21842 0.97417 1.02883 0.97823 1.86671 1.43149
1.90262 1.14020 0.95097 0.96235 0.89674 0.92723 0.94099 0.95119
0.88666 0.90379 0.89568 0.89102 0.91476 0.90522 0.88834 0.88535
0.88983 0.91704 0.91033 0.91908 0.91567 0.91447 0.91567 0.76687
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -3.35 8.80 37.16 0.33 -3.03 16
2 C 0.23 5.84 1.73 -68.86 -0.12 5.73 16
3 H 0.02 0.62 7.92 -51.93 -0.41 0.21 16
4 C -0.52 -13.41 7.93 -34.44 -0.27 -13.69 16
5 H 0.06 1.55 6.39 -52.48 -0.34 1.22 16
6 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16
7 N -0.88 -25.15 11.32 55.43 0.63 -24.52 16
8 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16
9 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16
10 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16
11 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16
12 N -0.46 -9.29 4.27 -176.09 -0.75 -10.04 16
13 C 0.04 0.72 9.13 60.06 0.55 1.26 16
14 C 0.40 7.98 5.56 -318.88 -1.77 6.20 16
15 N -0.32 -7.18 10.00 30.31 0.30 -6.88 16
16 N -0.28 -5.53 11.90 32.99 0.39 -5.14 16
17 C 0.15 2.33 5.14 -154.02 -0.79 1.54 16
18 C -0.02 -0.28 2.82 -90.21 -0.25 -0.53 16
19 H 0.09 0.84 5.86 -51.93 -0.30 0.53 16
20 C -0.14 -1.44 6.73 -25.17 -0.17 -1.61 16
21 C 0.05 0.48 7.63 37.93 0.29 0.77 16
22 O -0.37 -4.53 11.65 -35.23 -0.41 -4.94 16
23 C 0.06 0.68 7.05 37.93 0.27 0.95 16
24 N -0.47 -7.30 2.37 -114.09 -0.27 -7.57 16
25 C 0.09 0.96 5.10 -4.05 -0.02 0.94 16
26 C 0.11 1.28 1.17 -90.62 -0.11 1.18 16
27 C -0.18 -1.42 8.82 37.16 0.33 -1.09 16
28 C -0.14 -1.57 7.72 37.16 0.29 -1.29 16
29 O -0.53 -8.15 12.11 -35.23 -0.43 -8.58 16
30 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16
31 H 0.02 0.50 6.23 -51.93 -0.32 0.17 16
32 H 0.08 2.42 6.07 -51.93 -0.32 2.11 16
33 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16
34 H 0.04 0.58 6.61 -51.93 -0.34 0.24 16
35 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16
36 H 0.09 1.70 6.24 -51.93 -0.32 1.37 16
37 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16
38 H 0.09 1.01 7.73 -51.93 -0.40 0.60 16
39 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16
40 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16
41 H 0.08 1.08 7.64 -51.93 -0.40 0.68 16
42 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16
43 H 0.10 1.03 6.58 -51.93 -0.34 0.69 16
44 H 0.09 0.77 7.11 -51.93 -0.37 0.40 16
45 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16
46 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16
47 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16
48 H 0.07 0.93 6.64 -51.93 -0.34 0.59 16
49 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16
50 H 0.07 0.55 7.18 -51.93 -0.37 0.17 16
51 H 0.38 5.48 8.95 45.56 0.41 5.88 16
LS Contribution 391.98 15.07 5.91 5.91
Total: -1.00 -32.38 391.98 -8.74 -41.12
By element:
Atomic # 1 Polarization: 13.57 SS G_CDS: -7.54 Total: 6.03 kcal
Atomic # 6 Polarization: 0.53 SS G_CDS: -1.55 Total: -1.02 kcal
Atomic # 7 Polarization: -54.45 SS G_CDS: 0.30 Total: -54.15 kcal
Atomic # 8 Polarization: -12.69 SS G_CDS: -0.84 Total: -13.52 kcal
Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal
Total LS contribution 5.91 Total: 5.91 kcal
Total: -32.38 -8.74 -41.12 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001509954577.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 43.200 kcal
(2) G-P(sol) polarization free energy of solvation -32.380 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.820 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.744 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.124 kcal
(6) G-S(sol) free energy of system = (1) + (5) 2.076 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 3.09 seconds