Wall clock time and date at job start Tue Mar 31 2020 22:48:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 H 1.08997 * 109.47704 * 2 1
4 4 C 1.50705 * 109.46910 * 240.00032 * 2 1 3
5 5 H 1.08003 * 119.99952 * 240.00494 * 4 2 1
6 6 C 1.37875 * 120.00077 * 60.00286 * 4 2 1
7 7 N 1.31519 * 119.99787 * 359.97438 * 6 4 2
8 8 Si 1.86796 * 120.00097 * 180.02562 * 6 4 2
9 9 H 1.48496 * 109.47608 * 59.99727 * 8 6 4
10 10 H 1.48501 * 109.47118 * 180.02562 * 8 6 4
11 11 H 1.48506 * 109.47052 * 299.99626 * 8 6 4
12 12 N 1.46904 * 109.47042 * 120.00355 * 2 1 3
13 13 C 1.46894 * 110.99974 * 176.04211 * 12 2 1
14 14 C 1.38579 * 110.99682 * 299.99777 * 12 2 1
15 15 N 1.31209 * 126.47755 * 339.55925 * 14 12 2
16 16 N 1.28521 * 109.86510 * 179.97438 * 15 14 12
17 17 C 1.30298 * 110.05229 * 0.02562 * 16 15 14
18 18 C 1.50703 * 126.34501 * 179.97438 * 17 16 15
19 19 H 1.09002 * 110.45156 * 177.41746 * 18 17 16
20 20 C 1.54502 * 110.51405 * 300.02167 * 18 17 16
21 21 C 1.54479 * 104.06338 * 118.64826 * 20 18 17
22 22 O 1.44426 * 104.80162 * 23.98034 * 21 20 18
23 23 C 1.44426 * 105.27616 * 319.48795 * 22 21 20
24 24 N 1.36455 * 126.47016 * 159.25249 * 14 12 2
25 25 C 1.46499 * 127.13573 * 0.02954 * 24 14 12
26 26 C 1.52994 * 109.47580 * 274.06664 * 25 24 14
27 27 C 1.52999 * 109.47566 * 179.78145 * 26 25 24
28 28 C 1.53004 * 109.47211 * 299.78156 * 26 25 24
29 29 O 1.42902 * 109.47350 * 59.77800 * 26 25 24
30 30 H 1.08997 * 109.47704 * 179.97438 * 1 2 3
31 31 H 1.09004 * 109.47551 * 299.99809 * 1 2 3
32 32 H 1.09005 * 109.47258 * 59.99405 * 1 2 3
33 33 H 0.97005 * 119.99861 * 179.97438 * 7 6 4
34 34 H 1.08998 * 109.47053 * 179.97438 * 13 12 2
35 35 H 1.08996 * 109.47310 * 59.93509 * 13 12 2
36 36 H 1.09003 * 109.47647 * 299.93691 * 13 12 2
37 37 H 1.08997 * 110.51531 * 237.29781 * 20 18 17
38 38 H 1.09001 * 110.50939 * 359.87080 * 20 18 17
39 39 H 1.08993 * 110.37309 * 142.81538 * 21 20 18
40 40 H 1.09005 * 110.37122 * 265.04052 * 21 20 18
41 41 H 1.09005 * 110.37290 * 281.68134 * 23 22 21
42 42 H 1.08994 * 110.37363 * 159.34354 * 23 22 21
43 43 H 1.09002 * 109.47281 * 34.07005 * 25 24 14
44 44 H 1.09006 * 109.46517 * 154.06609 * 25 24 14
45 45 H 1.09001 * 109.47240 * 59.99464 * 27 26 25
46 46 H 1.09002 * 109.47275 * 180.02562 * 27 26 25
47 47 H 1.09007 * 109.46586 * 299.99787 * 27 26 25
48 48 H 1.08998 * 109.47377 * 63.52393 * 28 26 25
49 49 H 1.08997 * 109.47142 * 183.52722 * 28 26 25
50 50 H 1.09000 * 109.46806 * 303.52326 * 28 26 25
51 51 H 0.96700 * 113.99860 * 59.99569 * 29 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0323 -0.7104 -1.2305
5 1 2.6531 -1.5886 -1.1314
6 6 1.6992 -0.2394 -2.4828
7 7 0.9427 0.8297 -2.6034
8 14 2.3212 -1.1203 -4.0080
9 1 1.8257 -2.5202 -4.0078
10 1 1.8268 -0.4198 -5.2205
11 1 3.8063 -1.1209 -4.0082
12 7 2.0196 -0.6926 1.1994
13 6 3.4849 -0.7947 1.1870
14 6 1.5753 -0.0642 2.3519
15 7 1.1514 1.1735 2.4515
16 7 0.8165 1.4240 3.6668
17 6 1.0058 0.3697 4.4087
18 6 0.7350 0.2575 5.8869
19 1 0.9426 -0.7539 6.2365
20 6 1.5800 1.2856 6.6717
21 6 0.5309 2.1808 7.3676
22 8 -0.6530 1.3587 7.4595
23 6 -0.7248 0.6530 6.2014
24 7 1.4904 -0.6176 3.5963
25 6 1.8480 -1.9848 3.9824
26 6 0.6564 -2.9124 3.7369
27 6 1.0317 -4.3412 4.1351
28 6 -0.5348 -2.4454 4.5759
29 8 0.3052 -2.8805 2.3521
30 1 -0.3634 -1.0276 -0.0005
31 1 -0.3634 0.5138 0.8900
32 1 -0.3634 0.5139 -0.8900
33 1 0.7087 1.1614 -3.4844
34 1 3.8208 -1.3111 2.0862
35 1 3.9186 0.2048 1.1580
36 1 3.8028 -1.3543 0.3072
37 1 2.2037 0.7829 7.4109
38 1 2.1954 1.8736 5.9907
39 1 0.8741 2.4645 8.3624
40 1 0.3324 3.0692 6.7678
41 1 -1.1173 1.3060 5.4219
42 1 -1.3462 -0.2370 6.3005
43 1 2.6979 -2.3199 3.3877
44 1 2.1134 -2.0061 5.0395
45 1 1.2995 -4.3656 5.1914
46 1 0.1828 -5.0021 3.9598
47 1 1.8803 -4.6739 3.5373
48 1 -0.8419 -1.4518 4.2495
49 1 -1.3637 -3.1418 4.4493
50 1 -0.2474 -2.4099 5.6267
51 1 1.0148 -3.1646 1.7598
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001509954577.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:48:19
Heat of formation + Delta-G solvation = -21.029261 kcal
Electronic energy + Delta-G solvation = -32537.310223 eV
Core-core repulsion = 28473.040297 eV
Total energy + Delta-G solvation = -4064.269926 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.211 amu
Computer time = 0.97 seconds
Orbital eigenvalues (eV)
-44.00543 -40.29386 -39.36215 -38.73289 -35.57759 -34.93919 -33.84139 -33.00691
-31.21779 -30.79988 -29.62612 -28.29240 -27.91140 -27.26635 -26.00058 -24.56588
-23.55312 -23.13313 -21.97275 -20.91190 -20.69128 -18.78321 -18.20996 -17.64130
-17.40404 -17.31463 -16.85297 -16.55420 -16.26794 -16.04038 -15.97793 -15.73158
-15.27701 -15.10290 -14.78667 -14.25897 -14.00280 -13.78435 -13.55096 -13.51729
-13.21825 -13.08078 -12.97391 -12.88030 -12.70330 -12.69291 -12.68710 -12.59674
-12.40918 -12.27256 -12.16647 -12.10525 -12.10047 -12.02648 -11.81692 -11.42818
-11.31126 -11.03683 -10.82560 -10.58172 -10.49222 -10.21031 -9.09243 -8.09591
-6.24671 0.85593 1.35404 1.47006 1.49010 1.56314 1.92120 2.43524
2.83860 3.04553 3.21879 3.28853 3.42441 3.50258 3.58527 3.71549
3.74266 3.97447 4.02518 4.06245 4.16839 4.20407 4.30465 4.35518
4.45800 4.55700 4.67066 4.69169 4.73933 4.78771 4.84821 4.85474
4.88594 4.88982 4.92557 4.98039 5.00276 5.03720 5.08594 5.10984
5.21919 5.25790 5.33678 5.47301 5.60792 5.67951 5.73994 5.96734
6.05132 6.19550 6.66024 6.86085 6.90759 7.44235 7.91393 8.97219
Molecular weight = 338.21amu
Principal moments of inertia in cm(-1)
A = 0.015202 B = 0.003824 C = 0.003380
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1841.368315 B = 7320.509635 C = 8281.672799
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.106 4.106
2 C 0.247 3.753
3 H -0.029 1.029
4 C -0.521 4.521
5 H 0.079 0.921
6 C 0.010 3.990
7 N -0.922 5.922
8 Si 0.969 3.031
9 H -0.267 1.267
10 H -0.292 1.292
11 H -0.265 1.265
12 N -0.444 5.444
13 C 0.042 3.958
14 C 0.383 3.617
15 N -0.375 5.375
16 N -0.326 5.326
17 C 0.180 3.820
18 C -0.023 4.023
19 H 0.132 0.868
20 C -0.137 4.137
21 C 0.043 3.957
22 O -0.382 6.382
23 C 0.060 3.940
24 N -0.459 5.459
25 C 0.074 3.926
26 C 0.109 3.891
27 C -0.165 4.165
28 C -0.142 4.142
29 O -0.568 6.568
30 H 0.027 0.973
31 H 0.008 0.992
32 H 0.056 0.944
33 H 0.261 0.739
34 H 0.084 0.916
35 H 0.008 0.992
36 H 0.095 0.905
37 H 0.115 0.885
38 H 0.065 0.935
39 H 0.121 0.879
40 H 0.049 0.951
41 H 0.042 0.958
42 H 0.114 0.886
43 H 0.106 0.894
44 H 0.136 0.864
45 H 0.094 0.906
46 H 0.065 0.935
47 H 0.070 0.930
48 H 0.028 0.972
49 H 0.065 0.935
50 H 0.102 0.898
51 H 0.384 0.616
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.584 -10.928 22.231 25.192
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.165 4.165
2 C 0.141 3.859
3 H -0.012 1.012
4 C -0.559 4.559
5 H 0.097 0.903
6 C -0.189 4.189
7 N -0.561 5.561
8 Si 0.794 3.206
9 H -0.192 1.192
10 H -0.218 1.218
11 H -0.190 1.190
12 N -0.169 5.169
13 C -0.105 4.105
14 C 0.025 3.975
15 N -0.219 5.219
16 N -0.165 5.165
17 C -0.089 4.089
18 C -0.044 4.044
19 H 0.150 0.850
20 C -0.176 4.176
21 C -0.033 4.033
22 O -0.300 6.300
23 C -0.018 4.018
24 N -0.153 5.153
25 C -0.048 4.048
26 C 0.067 3.933
27 C -0.223 4.223
28 C -0.199 4.199
29 O -0.376 6.376
30 H 0.046 0.954
31 H 0.027 0.973
32 H 0.075 0.925
33 H 0.070 0.930
34 H 0.102 0.898
35 H 0.027 0.973
36 H 0.114 0.886
37 H 0.133 0.867
38 H 0.084 0.916
39 H 0.139 0.861
40 H 0.067 0.933
41 H 0.061 0.939
42 H 0.132 0.868
43 H 0.125 0.875
44 H 0.154 0.846
45 H 0.113 0.887
46 H 0.084 0.916
47 H 0.089 0.911
48 H 0.048 0.952
49 H 0.084 0.916
50 H 0.121 0.879
51 H 0.233 0.767
Dipole moment (debyes) X Y Z Total
from point charges 3.249 -9.699 22.078 24.333
hybrid contribution 1.101 -0.345 -1.749 2.096
sum 4.351 -10.044 20.329 23.089
Atomic orbital electron populations
1.21482 0.97906 0.98284 0.98790 1.18839 0.92041 0.90431 0.84571
1.01181 1.21340 1.31873 1.12857 0.89833 0.90293 1.25816 0.95150
0.95607 1.02323 1.70102 1.37484 1.24370 1.24180 0.85445 0.78853
0.78555 0.77746 1.19169 1.21813 1.19020 1.59045 1.11232 1.48522
0.98070 1.22391 0.84105 1.00142 1.03902 1.22804 1.00367 0.88021
0.86262 1.74683 1.21940 1.13068 1.12167 1.73791 1.20466 1.24618
0.97618 1.24775 1.02319 0.85418 0.96340 1.21097 0.97171 1.03552
0.82605 0.84992 1.22998 0.98373 0.96827 0.99368 1.23552 0.83900
0.93384 1.02458 1.89106 1.46290 1.59646 1.35003 1.23423 0.94900
0.97305 0.86183 1.46127 1.49716 1.12827 1.06600 1.23101 0.99655
0.77294 1.04729 1.21720 0.93576 0.94952 0.83006 1.22359 1.02735
0.93336 1.03856 1.21899 0.97616 1.00596 0.99824 1.86658 1.43984
1.90619 1.16319 0.95365 0.97273 0.92524 0.93015 0.89790 0.97276
0.88614 0.86666 0.91609 0.86147 0.93283 0.93912 0.86841 0.87540
0.84603 0.88733 0.91612 0.91102 0.95230 0.91621 0.87894 0.76693
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -5.89 8.80 71.98 0.63 -5.26 16
2 C 0.25 13.05 1.73 44.17 0.08 13.13 16
3 H -0.03 -1.84 7.92 -2.39 -0.02 -1.86 16
4 C -0.52 -27.60 7.93 25.60 0.20 -27.40 16
5 H 0.08 3.85 6.39 -2.91 -0.02 3.83 16
6 C 0.01 0.55 5.30 84.65 0.45 1.00 16
7 N -0.92 -54.90 11.32 21.45 0.24 -54.66 16
8 Si 0.97 42.67 29.54 68.60 2.03 44.70 16
9 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16
10 H -0.29 -13.00 7.11 99.48 0.71 -12.30 16
11 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16
12 N -0.44 -18.42 4.27 -711.02 -3.04 -21.46 16
13 C 0.04 1.45 9.13 127.69 1.17 2.62 16
14 C 0.38 15.61 5.56 260.12 1.45 17.05 16
15 N -0.38 -17.98 10.00 -58.01 -0.58 -18.56 16
16 N -0.33 -13.47 11.90 -49.54 -0.59 -14.06 16
17 C 0.18 5.46 5.14 137.64 0.71 6.17 16
18 C -0.02 -0.46 2.82 -10.53 -0.03 -0.49 16
19 H 0.13 1.60 5.86 -2.39 -0.01 1.58 16
20 C -0.14 -2.35 6.73 31.61 0.21 -2.14 16
21 C 0.04 0.79 7.63 72.49 0.55 1.35 16
22 O -0.38 -8.44 11.65 -148.98 -1.74 -10.18 16
23 C 0.06 1.33 7.05 72.48 0.51 1.84 16
24 N -0.46 -13.63 2.37 -514.86 -1.22 -14.85 16
25 C 0.07 1.37 5.10 86.38 0.44 1.81 16
26 C 0.11 2.11 1.17 -10.79 -0.01 2.09 16
27 C -0.17 -1.94 8.82 71.98 0.63 -1.31 16
28 C -0.14 -2.74 7.72 71.98 0.56 -2.19 16
29 O -0.57 -16.88 12.11 -148.98 -1.80 -18.69 16
30 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16
31 H 0.01 0.47 6.23 -2.38 -0.01 0.46 16
32 H 0.06 3.44 6.07 -2.38 -0.01 3.42 16
33 H 0.26 14.84 8.31 -92.70 -0.77 14.07 16
34 H 0.08 2.18 6.61 -2.39 -0.02 2.16 16
35 H 0.01 0.33 8.14 -2.39 -0.02 0.32 16
36 H 0.10 3.31 6.24 -2.39 -0.01 3.30 16
37 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16
38 H 0.07 1.44 7.73 -2.39 -0.02 1.42 16
39 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16
40 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16
41 H 0.04 1.24 7.64 -2.38 -0.02 1.23 16
42 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16
43 H 0.11 1.81 6.58 -2.39 -0.02 1.80 16
44 H 0.14 1.36 7.11 -2.38 -0.02 1.34 16
45 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16
46 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16
47 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16
48 H 0.03 0.79 6.64 -2.39 -0.02 0.77 16
49 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16
50 H 0.10 1.16 7.18 -2.39 -0.02 1.14 16
51 H 0.38 10.65 8.95 -74.06 -0.66 9.99 16
Total: -1.00 -78.25 391.98 1.13 -77.13
By element:
Atomic # 1 Polarization: 22.07 SS G_CDS: 0.28 Total: 22.35 kcal
Atomic # 6 Polarization: 0.74 SS G_CDS: 7.55 Total: 8.29 kcal
Atomic # 7 Polarization: -118.41 SS G_CDS: -5.19 Total: -123.60 kcal
Atomic # 8 Polarization: -25.32 SS G_CDS: -3.54 Total: -28.86 kcal
Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal
Total: -78.25 1.13 -77.13 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001509954577.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 56.097 kcal
(2) G-P(sol) polarization free energy of solvation -78.252 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.155 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.126 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.126 kcal
(6) G-S(sol) free energy of system = (1) + (5) -21.029 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.97 seconds