Wall clock time and date at job start Tue Mar 31 2020 22:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47187 * 2 1 4 4 C 1.50696 * 109.47628 * 120.00605 * 2 1 3 5 5 H 1.07994 * 120.00398 * 119.99702 * 4 2 1 6 6 C 1.37886 * 119.99715 * 299.99942 * 4 2 1 7 7 N 1.31517 * 119.99784 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 120.00097 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.47068 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.47394 * 119.99784 * 8 6 4 11 11 H 1.48501 * 109.47349 * 239.99833 * 8 6 4 12 12 N 1.46901 * 109.46715 * 240.00550 * 2 1 3 13 13 C 1.46902 * 110.99862 * 183.95271 * 12 2 1 14 14 C 1.38573 * 111.00249 * 59.99781 * 12 2 1 15 15 N 1.31221 * 126.47295 * 23.14116 * 14 12 2 16 16 N 1.28529 * 109.86059 * 179.82545 * 15 14 12 17 17 C 1.30295 * 110.05112 * 0.44467 * 16 15 14 18 18 C 1.50703 * 126.34627 * 179.69501 * 17 16 15 19 19 H 1.08995 * 110.45961 * 177.44264 * 18 17 16 20 20 C 1.54512 * 110.51270 * 300.04553 * 18 17 16 21 21 C 1.54472 * 104.06498 * 118.64009 * 20 18 17 22 22 O 1.44426 * 104.80180 * 23.98316 * 21 20 18 23 23 C 1.44423 * 105.27333 * 319.48420 * 22 21 20 24 24 N 1.36457 * 126.47513 * 203.45089 * 14 12 2 25 25 C 1.46505 * 127.13416 * 359.97438 * 24 14 12 26 26 C 1.52997 * 109.46877 * 92.83197 * 25 24 14 27 27 C 1.53001 * 109.47051 * 184.99992 * 26 25 24 28 28 C 1.52996 * 109.47533 * 305.00096 * 26 25 24 29 29 O 1.42905 * 109.47190 * 64.99973 * 26 25 24 30 30 H 1.08994 * 109.47547 * 59.99597 * 1 2 3 31 31 H 1.08998 * 109.47187 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47029 * 299.99470 * 1 2 3 33 33 H 0.97001 * 119.99684 * 179.97438 * 7 6 4 34 34 H 1.08996 * 109.47203 * 66.45860 * 13 12 2 35 35 H 1.08997 * 109.47191 * 186.45952 * 13 12 2 36 36 H 1.09000 * 109.46702 * 306.46144 * 13 12 2 37 37 H 1.09000 * 110.51298 * 237.29331 * 20 18 17 38 38 H 1.09009 * 110.50905 * 359.86090 * 20 18 17 39 39 H 1.09006 * 110.37153 * 142.80856 * 21 20 18 40 40 H 1.08996 * 110.37796 * 265.03851 * 21 20 18 41 41 H 1.08997 * 110.37601 * 281.68021 * 23 22 21 42 42 H 1.09008 * 110.37013 * 159.34328 * 23 22 21 43 43 H 1.09002 * 109.46864 * 212.83297 * 25 24 14 44 44 H 1.09002 * 109.47143 * 332.83621 * 25 24 14 45 45 H 1.08999 * 109.47061 * 60.00224 * 27 26 25 46 46 H 1.09001 * 109.46982 * 180.02562 * 27 26 25 47 47 H 1.09006 * 109.47027 * 299.99909 * 27 26 25 48 48 H 1.09004 * 109.47398 * 59.99683 * 28 26 25 49 49 H 1.08995 * 109.47671 * 180.02562 * 28 26 25 50 50 H 1.09008 * 109.46904 * 299.99874 * 28 26 25 51 51 H 0.96697 * 113.99550 * 59.99777 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0325 -0.7105 1.2303 5 1 2.6533 -1.5885 1.1312 6 6 1.6994 -0.2395 2.4827 7 7 0.9437 0.8301 2.6034 8 14 2.3215 -1.1205 4.0078 9 1 3.1467 -2.2872 3.6035 10 1 3.1469 -0.1876 4.8164 11 1 1.1663 -1.5869 4.8160 12 7 2.0196 -0.6924 -1.1995 13 6 3.4850 -0.7944 -1.1872 14 6 1.5752 -0.0640 -2.3519 15 7 1.1978 1.1880 -2.4616 16 7 0.8506 1.4347 -3.6743 17 6 0.9759 0.3612 -4.4020 18 6 0.6640 0.2367 -5.8711 19 1 0.9050 -0.7644 -6.2283 20 6 -0.8223 0.5636 -6.1388 21 6 -0.7739 1.7892 -7.0778 22 8 0.5179 1.7119 -7.7191 23 6 1.4344 1.3035 -6.6803 24 7 1.4418 -0.6317 -3.5855 25 6 1.7372 -2.0175 -3.9580 26 6 0.4662 -2.8603 -3.8361 27 6 0.8006 -4.3291 -4.1038 28 6 -0.1075 -2.7170 -2.4250 29 8 -0.4976 -2.4096 -4.7901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 0.7091 1.1612 3.4845 34 1 3.7969 -1.4482 -0.3728 35 1 3.8285 -1.2068 -2.1359 36 1 3.9169 0.1960 -1.0438 37 1 -1.3153 -0.2751 -6.6303 38 1 -1.3321 0.8129 -5.2080 39 1 -1.5700 1.7301 -7.8201 40 1 -0.8595 2.7113 -6.5031 41 1 1.6895 2.1511 -6.0444 42 1 2.3348 0.8713 -7.1172 43 1 2.0965 -2.0485 -4.9867 44 1 2.5032 -2.4170 -3.2933 45 1 1.5357 -4.6729 -3.3761 46 1 -0.1051 -4.9295 -4.0174 47 1 1.2092 -4.4313 -5.1092 48 1 -0.3457 -1.6705 -2.2341 49 1 -1.0127 -3.3177 -2.3379 50 1 0.6277 -3.0608 -1.6972 51 1 -0.2009 -2.4719 -5.7083 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001509954579.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:50 Heat of formation + Delta-G solvation = 0.833895 kcal Electronic energy + Delta-G solvation = -32546.285318 eV Core-core repulsion = 28482.963449 eV Total energy + Delta-G solvation = -4063.321869 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 6.10 seconds Orbital eigenvalues (eV) -42.65513 -39.32229 -38.55341 -37.08824 -34.40608 -33.26855 -32.71392 -31.92356 -29.76052 -29.29202 -28.28048 -27.38394 -26.95316 -25.39407 -24.36944 -23.45052 -22.38502 -21.61994 -20.97109 -19.79823 -19.25995 -17.63408 -16.68990 -16.42632 -16.31839 -16.01446 -15.45589 -15.42390 -15.15806 -14.99032 -14.65765 -14.38460 -14.09020 -13.66386 -13.31048 -13.01951 -12.79797 -12.67210 -12.42550 -12.21484 -12.09988 -11.98880 -11.83978 -11.73139 -11.65772 -11.40853 -11.22965 -11.17881 -11.03151 -10.94487 -10.90833 -10.71683 -10.50382 -10.31547 -10.20901 -10.07771 -9.93552 -9.87943 -9.47699 -9.19495 -8.61417 -8.46014 -7.49825 -6.06712 -4.14182 2.15620 2.59386 3.25456 3.33497 3.34237 3.35653 3.81206 3.99219 4.28708 4.41098 4.41728 4.47792 4.49984 4.58719 4.70819 4.83374 4.90984 5.00360 5.11485 5.18810 5.21054 5.25939 5.43029 5.49093 5.58101 5.64352 5.67800 5.70773 5.80562 5.82485 5.92316 5.97580 6.02808 6.10368 6.11833 6.21540 6.35631 6.45992 6.58388 6.64022 6.87358 6.93771 7.09602 7.19747 7.42017 7.43974 7.67411 7.72512 7.94257 8.22502 8.43391 8.88387 9.32193 9.50778 10.99697 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.015367 B = 0.003792 C = 0.003375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.613994 B = 7382.291643 C = 8293.402739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.230 3.770 3 H 0.024 0.976 4 C -0.515 4.515 5 H 0.064 0.936 6 C 0.064 3.936 7 N -0.883 5.883 8 Si 0.898 3.102 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.284 1.284 12 N -0.461 5.461 13 C 0.045 3.955 14 C 0.385 3.615 15 N -0.314 5.314 16 N -0.285 5.285 17 C 0.166 3.834 18 C -0.018 4.018 19 H 0.088 0.912 20 C -0.134 4.134 21 C 0.046 3.954 22 O -0.376 6.376 23 C 0.056 3.944 24 N -0.471 5.471 25 C 0.088 3.912 26 C 0.116 3.884 27 C -0.174 4.174 28 C -0.135 4.135 29 O -0.547 6.547 30 H 0.018 0.982 31 H 0.027 0.973 32 H 0.088 0.912 33 H 0.262 0.738 34 H 0.091 0.909 35 H 0.040 0.960 36 H 0.034 0.966 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.066 0.934 41 H 0.075 0.925 42 H 0.091 0.909 43 H 0.086 0.914 44 H 0.106 0.894 45 H 0.072 0.928 46 H 0.071 0.929 47 H 0.057 0.943 48 H 0.070 0.930 49 H 0.056 0.944 50 H 0.084 0.916 51 H 0.365 0.635 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.723 -8.238 -18.574 20.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.126 3.874 3 H 0.042 0.958 4 C -0.553 4.553 5 H 0.083 0.917 6 C -0.139 4.139 7 N -0.521 5.521 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.210 1.210 12 N -0.187 5.187 13 C -0.102 4.102 14 C 0.030 3.970 15 N -0.157 5.157 16 N -0.124 5.124 17 C -0.102 4.102 18 C -0.039 4.039 19 H 0.106 0.894 20 C -0.173 4.173 21 C -0.031 4.031 22 O -0.294 6.294 23 C -0.022 4.022 24 N -0.165 5.165 25 C -0.037 4.037 26 C 0.074 3.926 27 C -0.232 4.232 28 C -0.192 4.192 29 O -0.353 6.353 30 H 0.037 0.963 31 H 0.046 0.954 32 H 0.106 0.894 33 H 0.072 0.928 34 H 0.109 0.891 35 H 0.059 0.941 36 H 0.053 0.947 37 H 0.098 0.902 38 H 0.105 0.895 39 H 0.109 0.891 40 H 0.084 0.916 41 H 0.093 0.907 42 H 0.109 0.891 43 H 0.104 0.896 44 H 0.125 0.875 45 H 0.091 0.909 46 H 0.090 0.910 47 H 0.076 0.924 48 H 0.089 0.911 49 H 0.075 0.925 50 H 0.103 0.897 51 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -0.133 -7.008 -17.654 18.995 hybrid contribution 1.149 -1.423 0.407 1.874 sum 1.016 -8.430 -17.247 19.224 Atomic orbital electron populations 1.21819 0.97081 0.99068 1.01007 1.19342 0.92862 0.92870 0.82328 0.95820 1.21075 1.32070 1.12697 0.89482 0.91747 1.24900 0.95027 0.94984 0.98958 1.69931 1.36078 1.22557 1.23540 0.86444 0.78577 0.79502 0.82856 1.19780 1.21045 1.20993 1.59269 1.10308 1.49882 0.99226 1.22257 0.85539 1.01581 1.00871 1.22988 1.00491 0.88031 0.85484 1.74822 1.19955 1.10746 1.10221 1.73913 1.18152 1.22190 0.98183 1.23998 1.05078 0.85951 0.95152 1.20681 0.96903 1.00612 0.85709 0.89385 1.22894 0.94545 0.98678 1.01150 1.23453 0.86029 0.97973 0.95634 1.89095 1.18344 1.89529 1.32448 1.23480 0.92825 0.96583 0.89309 1.46047 1.50974 1.10385 1.09121 1.22559 0.99451 0.79578 1.02095 1.21643 0.87434 0.91749 0.91729 1.22424 1.03066 0.95690 1.02008 1.21781 1.01498 1.04032 0.91902 1.86734 1.42983 1.87665 1.17874 0.96339 0.95360 0.89354 0.92801 0.89094 0.94128 0.94722 0.90174 0.89488 0.89123 0.91601 0.90684 0.89092 0.89617 0.87541 0.90939 0.91045 0.92422 0.91119 0.92453 0.89687 0.78809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.33 8.45 37.16 0.31 -3.02 16 2 C 0.23 5.72 1.72 -68.87 -0.12 5.60 16 3 H 0.02 0.69 7.90 -51.93 -0.41 0.28 16 4 C -0.51 -13.33 7.99 -34.44 -0.28 -13.61 16 5 H 0.06 1.61 6.42 -52.49 -0.34 1.27 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 7 N -0.88 -24.91 11.32 55.43 0.63 -24.29 16 8 Si 0.90 20.56 29.54 -169.99 -5.02 15.54 16 9 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 N -0.46 -9.39 4.39 -176.09 -0.77 -10.16 16 13 C 0.05 0.81 9.01 60.07 0.54 1.35 16 14 C 0.39 7.60 4.29 -318.87 -1.37 6.23 16 15 N -0.31 -7.04 10.17 30.31 0.31 -6.73 16 16 N -0.28 -5.62 11.90 32.99 0.39 -5.23 16 17 C 0.17 2.58 6.17 -154.02 -0.95 1.63 16 18 C -0.02 -0.20 2.94 -90.20 -0.27 -0.46 16 19 H 0.09 0.75 5.88 -51.93 -0.31 0.45 16 20 C -0.13 -1.45 6.73 -25.16 -0.17 -1.62 16 21 C 0.05 0.48 7.63 37.93 0.29 0.77 16 22 O -0.38 -4.51 11.65 -35.23 -0.41 -4.92 16 23 C 0.06 0.63 7.17 37.93 0.27 0.91 16 24 N -0.47 -7.28 2.30 -114.08 -0.26 -7.54 16 25 C 0.09 0.98 5.03 -4.04 -0.02 0.96 16 26 C 0.12 1.27 1.18 -90.62 -0.11 1.16 16 27 C -0.17 -1.40 8.81 37.16 0.33 -1.07 16 28 C -0.13 -2.00 8.06 37.16 0.30 -1.70 16 29 O -0.55 -5.94 11.97 -35.23 -0.42 -6.37 16 30 H 0.02 0.45 6.33 -51.93 -0.33 0.13 16 31 H 0.03 0.68 7.89 -51.93 -0.41 0.27 16 32 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 33 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 34 H 0.09 1.62 6.49 -51.93 -0.34 1.28 16 35 H 0.04 0.59 7.08 -51.93 -0.37 0.23 16 36 H 0.03 0.67 8.12 -51.93 -0.42 0.24 16 37 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.09 1.17 7.73 -51.92 -0.40 0.77 16 39 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.07 1.00 7.64 -51.93 -0.40 0.60 16 42 H 0.09 0.84 8.14 -51.92 -0.42 0.42 16 43 H 0.09 0.69 7.35 -51.93 -0.38 0.31 16 44 H 0.11 1.18 7.08 -51.93 -0.37 0.81 16 45 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 48 H 0.07 1.33 5.86 -51.93 -0.30 1.02 16 49 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 50 H 0.08 1.31 8.14 -51.92 -0.42 0.89 16 51 H 0.37 2.53 7.99 45.56 0.36 2.89 16 LS Contribution 392.48 15.07 5.91 5.91 Total: -1.00 -32.06 392.48 -8.63 -40.69 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -7.66 Total: 4.36 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: -1.33 Total: -1.26 kcal Atomic # 7 Polarization: -54.25 SS G_CDS: 0.29 Total: -53.95 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: -0.83 Total: -11.28 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.06 -8.63 -40.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001509954579.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.527 kcal (2) G-P(sol) polarization free energy of solvation -32.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.10 seconds