Wall clock time and date at job start Tue Mar 31 2020 22:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47187 * 2 1 4 4 C 1.50696 * 109.47628 * 120.00605 * 2 1 3 5 5 H 1.07994 * 120.00398 * 119.99702 * 4 2 1 6 6 C 1.37886 * 119.99715 * 299.99942 * 4 2 1 7 7 N 1.31517 * 119.99784 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 120.00097 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.47068 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.47394 * 119.99784 * 8 6 4 11 11 H 1.48501 * 109.47349 * 239.99833 * 8 6 4 12 12 N 1.46901 * 109.46715 * 240.00550 * 2 1 3 13 13 C 1.46902 * 110.99862 * 183.95271 * 12 2 1 14 14 C 1.38573 * 111.00249 * 59.99781 * 12 2 1 15 15 N 1.31221 * 126.47295 * 23.14116 * 14 12 2 16 16 N 1.28529 * 109.86059 * 179.82545 * 15 14 12 17 17 C 1.30295 * 110.05112 * 0.44467 * 16 15 14 18 18 C 1.50703 * 126.34627 * 179.69501 * 17 16 15 19 19 H 1.08995 * 110.45961 * 177.44264 * 18 17 16 20 20 C 1.54512 * 110.51270 * 300.04553 * 18 17 16 21 21 C 1.54472 * 104.06498 * 118.64009 * 20 18 17 22 22 O 1.44426 * 104.80180 * 23.98316 * 21 20 18 23 23 C 1.44423 * 105.27333 * 319.48420 * 22 21 20 24 24 N 1.36457 * 126.47513 * 203.45089 * 14 12 2 25 25 C 1.46505 * 127.13416 * 359.97438 * 24 14 12 26 26 C 1.52997 * 109.46877 * 92.83197 * 25 24 14 27 27 C 1.53001 * 109.47051 * 184.99992 * 26 25 24 28 28 C 1.52996 * 109.47533 * 305.00096 * 26 25 24 29 29 O 1.42905 * 109.47190 * 64.99973 * 26 25 24 30 30 H 1.08994 * 109.47547 * 59.99597 * 1 2 3 31 31 H 1.08998 * 109.47187 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47029 * 299.99470 * 1 2 3 33 33 H 0.97001 * 119.99684 * 179.97438 * 7 6 4 34 34 H 1.08996 * 109.47203 * 66.45860 * 13 12 2 35 35 H 1.08997 * 109.47191 * 186.45952 * 13 12 2 36 36 H 1.09000 * 109.46702 * 306.46144 * 13 12 2 37 37 H 1.09000 * 110.51298 * 237.29331 * 20 18 17 38 38 H 1.09009 * 110.50905 * 359.86090 * 20 18 17 39 39 H 1.09006 * 110.37153 * 142.80856 * 21 20 18 40 40 H 1.08996 * 110.37796 * 265.03851 * 21 20 18 41 41 H 1.08997 * 110.37601 * 281.68021 * 23 22 21 42 42 H 1.09008 * 110.37013 * 159.34328 * 23 22 21 43 43 H 1.09002 * 109.46864 * 212.83297 * 25 24 14 44 44 H 1.09002 * 109.47143 * 332.83621 * 25 24 14 45 45 H 1.08999 * 109.47061 * 60.00224 * 27 26 25 46 46 H 1.09001 * 109.46982 * 180.02562 * 27 26 25 47 47 H 1.09006 * 109.47027 * 299.99909 * 27 26 25 48 48 H 1.09004 * 109.47398 * 59.99683 * 28 26 25 49 49 H 1.08995 * 109.47671 * 180.02562 * 28 26 25 50 50 H 1.09008 * 109.46904 * 299.99874 * 28 26 25 51 51 H 0.96697 * 113.99550 * 59.99777 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0325 -0.7105 1.2303 5 1 2.6533 -1.5885 1.1312 6 6 1.6994 -0.2395 2.4827 7 7 0.9437 0.8301 2.6034 8 14 2.3215 -1.1205 4.0078 9 1 3.1467 -2.2872 3.6035 10 1 3.1469 -0.1876 4.8164 11 1 1.1663 -1.5869 4.8160 12 7 2.0196 -0.6924 -1.1995 13 6 3.4850 -0.7944 -1.1872 14 6 1.5752 -0.0640 -2.3519 15 7 1.1978 1.1880 -2.4616 16 7 0.8506 1.4347 -3.6743 17 6 0.9759 0.3612 -4.4020 18 6 0.6640 0.2367 -5.8711 19 1 0.9050 -0.7644 -6.2283 20 6 -0.8223 0.5636 -6.1388 21 6 -0.7739 1.7892 -7.0778 22 8 0.5179 1.7119 -7.7191 23 6 1.4344 1.3035 -6.6803 24 7 1.4418 -0.6317 -3.5855 25 6 1.7372 -2.0175 -3.9580 26 6 0.4662 -2.8603 -3.8361 27 6 0.8006 -4.3291 -4.1038 28 6 -0.1075 -2.7170 -2.4250 29 8 -0.4976 -2.4096 -4.7901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 0.7091 1.1612 3.4845 34 1 3.7969 -1.4482 -0.3728 35 1 3.8285 -1.2068 -2.1359 36 1 3.9169 0.1960 -1.0438 37 1 -1.3153 -0.2751 -6.6303 38 1 -1.3321 0.8129 -5.2080 39 1 -1.5700 1.7301 -7.8201 40 1 -0.8595 2.7113 -6.5031 41 1 1.6895 2.1511 -6.0444 42 1 2.3348 0.8713 -7.1172 43 1 2.0965 -2.0485 -4.9867 44 1 2.5032 -2.4170 -3.2933 45 1 1.5357 -4.6729 -3.3761 46 1 -0.1051 -4.9295 -4.0174 47 1 1.2092 -4.4313 -5.1092 48 1 -0.3457 -1.6705 -2.2341 49 1 -1.0127 -3.3177 -2.3379 50 1 0.6277 -3.0608 -1.6972 51 1 -0.2009 -2.4719 -5.7083 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001509954579.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:44 Heat of formation + Delta-G solvation = -22.335429 kcal Electronic energy + Delta-G solvation = -32547.290015 eV Core-core repulsion = 28482.963449 eV Total energy + Delta-G solvation = -4064.326566 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 5.93 seconds Orbital eigenvalues (eV) -44.02111 -40.26009 -39.45785 -38.76756 -35.59386 -34.90430 -33.99821 -32.93292 -31.26093 -30.77500 -29.54553 -28.42052 -27.87547 -27.27502 -26.04251 -24.52329 -23.54979 -23.14719 -21.99515 -21.03958 -20.62445 -18.78736 -18.25098 -17.78983 -17.39572 -17.24005 -16.78498 -16.56771 -16.38826 -16.02688 -15.94091 -15.67475 -15.24407 -15.18041 -14.83079 -14.24789 -13.96282 -13.79981 -13.56556 -13.49778 -13.09866 -13.07492 -13.03788 -12.91993 -12.82138 -12.74623 -12.60576 -12.56593 -12.36345 -12.29533 -12.21478 -12.18482 -12.08428 -12.01012 -11.85558 -11.41746 -11.37244 -11.05299 -10.81447 -10.60346 -10.52983 -10.20667 -9.14266 -8.12521 -6.27431 0.84519 1.34338 1.44345 1.45937 1.57367 1.91028 2.41557 2.87531 3.02236 3.19130 3.22502 3.41243 3.56529 3.61208 3.64099 3.78293 3.99924 4.03114 4.10574 4.15104 4.24246 4.32471 4.39009 4.45755 4.56211 4.68650 4.74587 4.75049 4.80537 4.83327 4.87163 4.87445 4.91839 4.95001 4.96777 5.01143 5.05335 5.09065 5.14691 5.19273 5.30609 5.37661 5.43583 5.59025 5.66254 5.76314 5.93706 6.01712 6.16892 6.63567 6.83916 6.86843 7.41795 7.90002 8.94677 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.015367 B = 0.003792 C = 0.003375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.613994 B = 7382.291643 C = 8293.402739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.244 3.756 3 H -0.027 1.027 4 C -0.520 4.520 5 H 0.077 0.923 6 C 0.011 3.989 7 N -0.921 5.921 8 Si 0.968 3.032 9 H -0.256 1.256 10 H -0.285 1.285 11 H -0.284 1.284 12 N -0.451 5.451 13 C 0.046 3.954 14 C 0.372 3.628 15 N -0.371 5.371 16 N -0.331 5.331 17 C 0.192 3.808 18 C -0.015 4.015 19 H 0.132 0.868 20 C -0.129 4.129 21 C 0.045 3.955 22 O -0.381 6.381 23 C 0.057 3.943 24 N -0.460 5.460 25 C 0.075 3.925 26 C 0.125 3.875 27 C -0.165 4.165 28 C -0.132 4.132 29 O -0.563 6.563 30 H 0.008 0.992 31 H 0.030 0.970 32 H 0.058 0.942 33 H 0.261 0.739 34 H 0.093 0.907 35 H 0.080 0.920 36 H 0.012 0.988 37 H 0.111 0.889 38 H 0.053 0.947 39 H 0.118 0.882 40 H 0.047 0.953 41 H 0.045 0.955 42 H 0.121 0.879 43 H 0.134 0.866 44 H 0.112 0.888 45 H 0.074 0.926 46 H 0.067 0.933 47 H 0.091 0.909 48 H 0.024 0.976 49 H 0.055 0.945 50 H 0.074 0.926 51 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.971 -11.835 -21.543 24.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.139 3.861 3 H -0.009 1.009 4 C -0.559 4.559 5 H 0.095 0.905 6 C -0.188 4.188 7 N -0.561 5.561 8 Si 0.793 3.207 9 H -0.179 1.179 10 H -0.211 1.211 11 H -0.210 1.210 12 N -0.176 5.176 13 C -0.101 4.101 14 C 0.014 3.986 15 N -0.214 5.214 16 N -0.169 5.169 17 C -0.077 4.077 18 C -0.036 4.036 19 H 0.150 0.850 20 C -0.167 4.167 21 C -0.032 4.032 22 O -0.300 6.300 23 C -0.020 4.020 24 N -0.153 5.153 25 C -0.047 4.047 26 C 0.084 3.916 27 C -0.222 4.222 28 C -0.190 4.190 29 O -0.371 6.371 30 H 0.027 0.973 31 H 0.049 0.951 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.112 0.888 35 H 0.099 0.901 36 H 0.030 0.970 37 H 0.129 0.871 38 H 0.072 0.928 39 H 0.136 0.864 40 H 0.065 0.935 41 H 0.064 0.936 42 H 0.139 0.861 43 H 0.152 0.848 44 H 0.130 0.870 45 H 0.093 0.907 46 H 0.086 0.914 47 H 0.110 0.890 48 H 0.044 0.956 49 H 0.074 0.926 50 H 0.093 0.907 51 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 1.132 -10.632 -20.674 23.275 hybrid contribution 0.695 -0.260 1.196 1.407 sum 1.826 -10.892 -19.478 22.391 Atomic orbital electron populations 1.21539 0.97853 0.98365 0.98979 1.18889 0.92091 0.90604 0.84559 1.00940 1.21386 1.31819 1.12794 0.89868 0.90522 1.25804 0.95143 0.95597 1.02276 1.70101 1.37530 1.24295 1.24130 0.85353 0.77989 0.78665 0.78675 1.17945 1.21096 1.20994 1.59157 1.11609 1.48673 0.98175 1.22335 0.83999 1.00602 1.03208 1.22801 1.01181 0.87982 0.86597 1.74682 1.21603 1.13024 1.12094 1.73807 1.20579 1.24630 0.97922 1.24825 1.01606 0.84692 0.96547 1.21011 0.97196 1.02988 0.82453 0.84983 1.22863 0.94124 0.99861 0.99880 1.23529 0.86410 0.97109 0.96146 1.89099 1.18772 1.89579 1.32519 1.23483 0.93840 0.95668 0.89054 1.46180 1.49919 1.11979 1.07222 1.23087 0.99875 0.76785 1.04961 1.21452 0.86771 0.93820 0.89548 1.22341 1.03166 0.92642 1.04097 1.21685 1.01479 1.00751 0.95069 1.86703 1.43249 1.87840 1.19354 0.97300 0.95114 0.92276 0.92945 0.88834 0.90100 0.96960 0.87088 0.92831 0.86446 0.93476 0.93639 0.86102 0.84779 0.87030 0.90670 0.91440 0.89043 0.95649 0.92598 0.90687 0.76319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.90 8.45 71.98 0.61 -5.29 16 2 C 0.24 12.84 1.72 44.17 0.08 12.92 16 3 H -0.03 -1.68 7.90 -2.39 -0.02 -1.70 16 4 C -0.52 -27.62 7.99 25.60 0.20 -27.42 16 5 H 0.08 3.81 6.42 -2.91 -0.02 3.79 16 6 C 0.01 0.60 5.30 84.66 0.45 1.05 16 7 N -0.92 -54.40 11.32 21.45 0.24 -54.16 16 8 Si 0.97 42.60 29.54 68.60 2.03 44.63 16 9 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 10 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 11 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 12 N -0.45 -18.84 4.39 -711.01 -3.12 -21.97 16 13 C 0.05 1.63 9.01 127.69 1.15 2.78 16 14 C 0.37 15.06 4.29 260.11 1.12 16.17 16 15 N -0.37 -17.67 10.17 -58.00 -0.59 -18.26 16 16 N -0.33 -13.66 11.90 -49.54 -0.59 -14.25 16 17 C 0.19 5.83 6.17 137.64 0.85 6.68 16 18 C -0.02 -0.30 2.94 -10.52 -0.03 -0.33 16 19 H 0.13 1.43 5.88 -2.39 -0.01 1.42 16 20 C -0.13 -2.51 6.73 31.61 0.21 -2.29 16 21 C 0.04 0.86 7.63 72.48 0.55 1.41 16 22 O -0.38 -8.18 11.65 -148.98 -1.74 -9.91 16 23 C 0.06 1.16 7.17 72.48 0.52 1.68 16 24 N -0.46 -13.60 2.30 -514.84 -1.18 -14.79 16 25 C 0.07 1.37 5.03 86.38 0.43 1.81 16 26 C 0.13 2.34 1.18 -10.80 -0.01 2.33 16 27 C -0.16 -1.89 8.81 71.98 0.63 -1.26 16 28 C -0.13 -3.86 8.06 71.98 0.58 -3.28 16 29 O -0.56 -10.04 11.97 -148.98 -1.78 -11.83 16 30 H 0.01 0.45 6.33 -2.39 -0.02 0.43 16 31 H 0.03 1.57 7.89 -2.39 -0.02 1.55 16 32 H 0.06 3.52 6.07 -2.39 -0.01 3.51 16 33 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 34 H 0.09 3.26 6.49 -2.39 -0.02 3.24 16 35 H 0.08 2.20 7.08 -2.39 -0.02 2.18 16 36 H 0.01 0.47 8.12 -2.39 -0.02 0.45 16 37 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.05 1.44 7.73 -2.38 -0.02 1.42 16 39 H 0.12 1.64 8.14 -2.38 -0.02 1.62 16 40 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.05 1.20 7.64 -2.39 -0.02 1.18 16 42 H 0.12 1.73 8.14 -2.38 -0.02 1.71 16 43 H 0.13 1.23 7.35 -2.39 -0.02 1.21 16 44 H 0.11 2.01 7.08 -2.39 -0.02 1.99 16 45 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 46 H 0.07 0.87 8.14 -2.39 -0.02 0.86 16 47 H 0.09 0.48 8.14 -2.38 -0.02 0.46 16 48 H 0.02 0.96 5.86 -2.39 -0.01 0.94 16 49 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 50 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 51 H 0.39 3.01 7.99 -74.06 -0.59 2.42 16 Total: -1.00 -78.02 392.48 0.96 -77.06 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: 0.35 Total: 16.52 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: 7.35 Total: 6.95 kcal Atomic # 7 Polarization: -118.18 SS G_CDS: -5.24 Total: -123.43 kcal Atomic # 8 Polarization: -18.22 SS G_CDS: -3.52 Total: -21.74 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -78.02 0.96 -77.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001509954579.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.728 kcal (2) G-P(sol) polarization free energy of solvation -78.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.93 seconds