Wall clock time and date at job start Tue Mar 31 2020 22:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46929 * 2 1 4 4 C 1.50694 * 109.47107 * 240.00192 * 2 1 3 5 5 H 1.08004 * 119.99783 * 240.00017 * 4 2 1 6 6 C 1.37875 * 120.00179 * 59.99733 * 4 2 1 7 7 N 1.31509 * 120.00326 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99774 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47191 * 90.00514 * 8 6 4 10 10 H 1.48508 * 109.47197 * 209.99846 * 8 6 4 11 11 H 1.48497 * 109.47489 * 330.00225 * 8 6 4 12 12 N 1.46902 * 109.46875 * 119.99872 * 2 1 3 13 13 C 1.46900 * 110.99668 * 176.04722 * 12 2 1 14 14 C 1.38579 * 111.00007 * 299.99984 * 12 2 1 15 15 N 1.31217 * 126.47428 * 341.13661 * 14 12 2 16 16 N 1.28530 * 109.85793 * 179.73057 * 15 14 12 17 17 C 1.30294 * 110.05083 * 0.44972 * 16 15 14 18 18 C 1.50709 * 126.34311 * 179.82330 * 17 16 15 19 19 H 1.09001 * 111.01503 * 176.92074 * 18 17 16 20 20 C 1.55565 * 111.22571 * 52.61854 * 18 17 16 21 21 C 1.54379 * 102.27640 * 207.98199 * 20 18 17 22 22 O 1.43238 * 107.58639 * 21.35683 * 21 20 18 23 23 C 1.43644 * 109.97076 * 1.70941 * 22 21 20 24 24 N 1.36451 * 126.47148 * 161.13379 * 14 12 2 25 25 C 1.46505 * 127.13328 * 0.02562 * 24 14 12 26 26 C 1.53001 * 109.47130 * 269.12247 * 25 24 14 27 27 C 1.52997 * 109.46824 * 60.00206 * 26 25 24 28 28 C 1.52996 * 109.47206 * 180.02562 * 26 25 24 29 29 O 1.42908 * 109.47177 * 300.00698 * 26 25 24 30 30 H 1.08998 * 109.47309 * 60.00287 * 1 2 3 31 31 H 1.09005 * 109.46772 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47402 * 300.00022 * 1 2 3 33 33 H 0.96997 * 120.00272 * 180.02562 * 7 6 4 34 34 H 1.09000 * 109.47409 * 177.70348 * 13 12 2 35 35 H 1.09002 * 109.47176 * 297.70442 * 13 12 2 36 36 H 1.09006 * 109.47129 * 57.70460 * 13 12 2 37 37 H 1.09007 * 110.83967 * 89.78085 * 20 18 17 38 38 H 1.09007 * 111.01096 * 326.25899 * 20 18 17 39 39 H 1.08993 * 109.83240 * 261.84149 * 21 20 18 40 40 H 1.08999 * 109.82765 * 140.86433 * 21 20 18 41 41 H 1.09003 * 110.30634 * 94.49110 * 23 22 21 42 42 H 1.09008 * 110.30783 * 216.55592 * 23 22 21 43 43 H 1.08998 * 109.47695 * 29.12720 * 25 24 14 44 44 H 1.09000 * 109.46949 * 149.12607 * 25 24 14 45 45 H 1.09001 * 109.47661 * 60.00304 * 27 26 25 46 46 H 1.09006 * 109.47203 * 179.97438 * 27 26 25 47 47 H 1.09003 * 109.47641 * 300.00343 * 27 26 25 48 48 H 1.09000 * 109.47261 * 60.00123 * 28 26 25 49 49 H 1.09006 * 109.47158 * 180.02562 * 28 26 25 50 50 H 1.09001 * 109.46878 * 299.99450 * 28 26 25 51 51 H 0.96700 * 113.99653 * 299.99276 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3225 -1.1195 -4.0079 9 1 1.3448 -2.1616 -4.4124 10 1 2.4873 -0.1402 -5.1121 11 1 3.6309 -1.7565 -3.7119 12 7 2.0196 -0.6925 1.1995 13 6 3.4850 -0.7945 1.1871 14 6 1.5753 -0.0641 2.3519 15 7 1.1243 1.1646 2.4460 16 7 0.7941 1.4165 3.6623 17 6 1.0218 0.3753 4.4118 18 6 0.7719 0.2702 5.8943 19 1 1.0009 -0.7311 6.2593 20 6 -0.6870 0.6766 6.2498 21 6 -0.5393 1.1992 7.6949 22 8 0.8342 1.5572 7.8875 23 6 1.5714 1.3449 6.6730 24 7 1.5240 -0.6061 3.6031 25 6 1.9245 -1.9589 3.9979 26 6 0.7202 -2.8972 3.8970 27 6 0.2088 -2.9172 2.4552 28 6 1.1383 -4.3098 4.3099 29 8 -0.3176 -2.4354 4.7641 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 0.7089 1.1613 -3.4844 34 1 3.8236 -1.2748 2.1051 35 1 3.8007 -1.3878 0.3289 36 1 3.9182 0.2034 1.1180 37 1 -1.3497 -0.1881 6.2158 38 1 -1.0457 1.4644 5.5872 39 1 -0.8203 0.4180 8.4012 40 1 -1.1731 2.0744 7.8382 41 1 1.6247 2.2684 6.0965 42 1 2.5742 0.9815 6.8978 43 1 2.7160 -2.3112 3.3365 44 1 2.2888 -1.9447 5.0251 45 1 1.0002 -3.2695 1.7936 46 1 -0.6490 -3.5861 2.3831 47 1 -0.0892 -1.9107 2.1613 48 1 1.5024 -4.2953 5.3372 49 1 0.2804 -4.9784 4.2376 50 1 1.9299 -4.6623 3.6487 51 1 -0.0632 -2.3970 5.6963 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001509954581.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:00 Heat of formation + Delta-G solvation = 1.430077 kcal Electronic energy + Delta-G solvation = -32461.901826 eV Core-core repulsion = 28398.605810 eV Total energy + Delta-G solvation = -4063.296016 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 2.46 seconds Orbital eigenvalues (eV) -42.65131 -39.39098 -38.57021 -37.11494 -34.41425 -33.30698 -32.71918 -31.98331 -29.92447 -29.28265 -28.34445 -27.39244 -26.98306 -25.40574 -24.36771 -23.34368 -22.33058 -21.63961 -21.04680 -19.88345 -19.32289 -17.73846 -16.69920 -16.47630 -16.35423 -16.16049 -15.45867 -15.32930 -15.14539 -14.87113 -14.65878 -14.41290 -13.87939 -13.72826 -13.59028 -13.24880 -12.81317 -12.71171 -12.43836 -12.33041 -12.15318 -12.01697 -11.85346 -11.67745 -11.63696 -11.58619 -11.27059 -11.15548 -11.05639 -11.01088 -10.90988 -10.67395 -10.50931 -10.34787 -10.21229 -10.07554 -9.90867 -9.69859 -9.47203 -9.23258 -8.62311 -8.46089 -7.47522 -6.06279 -4.14081 2.13566 2.57294 3.26472 3.32458 3.33472 3.34624 3.68005 3.97044 4.27275 4.28369 4.38955 4.45674 4.50270 4.57318 4.69838 4.81449 4.85146 4.96368 5.01761 5.03504 5.14584 5.26005 5.40071 5.44765 5.55857 5.58525 5.65473 5.72510 5.78393 5.79637 5.85237 5.98820 6.01674 6.07646 6.10180 6.22823 6.33369 6.45441 6.59417 6.77309 6.86868 6.95941 7.12015 7.21115 7.41853 7.42907 7.67598 7.71812 7.94672 8.23481 8.42883 8.87882 9.32120 9.50799 11.00020 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.015837 B = 0.003711 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.541075 B = 7542.914824 C = 8442.971069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.230 3.770 3 H 0.024 0.976 4 C -0.516 4.516 5 H 0.064 0.936 6 C 0.065 3.935 7 N -0.883 5.883 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.458 5.458 13 C 0.042 3.958 14 C 0.387 3.613 15 N -0.314 5.314 16 N -0.282 5.282 17 C 0.166 3.834 18 C -0.020 4.020 19 H 0.091 0.909 20 C -0.140 4.140 21 C 0.052 3.948 22 O -0.383 6.383 23 C 0.063 3.937 24 N -0.471 5.471 25 C 0.086 3.914 26 C 0.115 3.885 27 C -0.135 4.135 28 C -0.174 4.174 29 O -0.547 6.547 30 H 0.088 0.912 31 H 0.026 0.974 32 H 0.022 0.978 33 H 0.263 0.737 34 H 0.041 0.959 35 H 0.094 0.906 36 H 0.032 0.968 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.084 0.916 43 H 0.106 0.894 44 H 0.086 0.914 45 H 0.081 0.919 46 H 0.056 0.944 47 H 0.074 0.926 48 H 0.057 0.943 49 H 0.071 0.929 50 H 0.071 0.929 51 H 0.365 0.635 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.402 -8.371 18.982 20.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.126 3.874 3 H 0.042 0.958 4 C -0.555 4.555 5 H 0.082 0.918 6 C -0.138 4.138 7 N -0.521 5.521 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.199 1.199 12 N -0.184 5.184 13 C -0.106 4.106 14 C 0.032 3.968 15 N -0.157 5.157 16 N -0.121 5.121 17 C -0.101 4.101 18 C -0.042 4.042 19 H 0.109 0.891 20 C -0.179 4.179 21 C -0.024 4.024 22 O -0.303 6.303 23 C -0.014 4.014 24 N -0.166 5.166 25 C -0.039 4.039 26 C 0.074 3.926 27 C -0.192 4.192 28 C -0.232 4.232 29 O -0.352 6.352 30 H 0.106 0.894 31 H 0.045 0.955 32 H 0.041 0.959 33 H 0.073 0.927 34 H 0.060 0.940 35 H 0.112 0.888 36 H 0.051 0.949 37 H 0.107 0.893 38 H 0.110 0.890 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.094 0.906 42 H 0.103 0.897 43 H 0.124 0.876 44 H 0.104 0.896 45 H 0.100 0.900 46 H 0.075 0.925 47 H 0.093 0.907 48 H 0.076 0.924 49 H 0.090 0.910 50 H 0.090 0.910 51 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 0.493 -7.208 17.976 19.374 hybrid contribution 1.170 -1.382 -0.300 1.835 sum 1.663 -8.590 17.676 19.723 Atomic orbital electron populations 1.21828 0.96982 0.99047 1.01259 1.19333 0.92975 0.92810 0.82240 0.95840 1.21034 1.32204 1.12720 0.89509 0.91792 1.24891 0.95026 0.94962 0.98937 1.69916 1.36005 1.22469 1.23660 0.86498 0.79095 0.79270 0.82489 1.20658 1.21226 1.19936 1.59270 1.10258 1.49546 0.99291 1.22302 0.85580 1.01170 1.01521 1.23030 1.00364 0.88400 0.84989 1.74837 1.20022 1.10434 1.10436 1.73906 1.18212 1.22320 0.97693 1.23725 1.04687 0.87003 0.94699 1.20973 0.97038 1.00263 0.85888 0.89115 1.23201 0.95302 1.03002 0.96347 1.23143 0.83527 0.99769 0.96003 1.88397 1.20266 1.87917 1.33686 1.23419 0.94952 0.98010 0.85056 1.45984 1.50261 1.12251 1.08128 1.22591 0.98940 0.80365 1.01971 1.21660 0.86574 0.91319 0.93058 1.21771 1.01877 1.04266 0.91283 1.22431 1.02855 0.96413 1.01530 1.86739 1.39535 1.88890 1.20042 0.89364 0.95502 0.95910 0.92730 0.93997 0.88755 0.94915 0.89333 0.88963 0.91245 0.91123 0.90567 0.89744 0.87556 0.89557 0.89998 0.92463 0.90684 0.92410 0.91006 0.90976 0.78882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.39 8.73 37.16 0.32 -3.07 16 2 C 0.23 5.75 1.72 -68.87 -0.12 5.63 16 3 H 0.02 0.68 7.93 -51.93 -0.41 0.27 16 4 C -0.52 -13.38 7.95 -34.44 -0.27 -13.65 16 5 H 0.06 1.59 6.40 -52.48 -0.34 1.26 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 7 N -0.88 -24.92 11.32 55.43 0.63 -24.30 16 8 Si 0.90 20.56 29.54 -169.99 -5.02 15.54 16 9 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 10 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 11 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 12 N -0.46 -9.33 4.02 -176.08 -0.71 -10.04 16 13 C 0.04 0.74 9.02 60.06 0.54 1.28 16 14 C 0.39 7.66 4.49 -318.88 -1.43 6.23 16 15 N -0.31 -7.05 9.91 30.31 0.30 -6.75 16 16 N -0.28 -5.58 11.90 32.99 0.39 -5.19 16 17 C 0.17 2.59 6.42 -154.02 -0.99 1.60 16 18 C -0.02 -0.23 3.03 -89.38 -0.27 -0.50 16 19 H 0.09 0.76 5.84 -51.93 -0.30 0.45 16 20 C -0.14 -1.47 6.50 -24.64 -0.16 -1.63 16 21 C 0.05 0.49 7.80 37.88 0.30 0.78 16 22 O -0.38 -4.47 11.36 -35.23 -0.40 -4.87 16 23 C 0.06 0.71 7.24 38.18 0.28 0.99 16 24 N -0.47 -7.28 2.41 -114.08 -0.27 -7.56 16 25 C 0.09 0.95 4.98 -4.04 -0.02 0.93 16 26 C 0.12 1.26 1.17 -90.62 -0.11 1.16 16 27 C -0.13 -1.97 8.05 37.16 0.30 -1.68 16 28 C -0.17 -1.37 8.81 37.16 0.33 -1.04 16 29 O -0.55 -6.10 12.10 -35.23 -0.43 -6.53 16 30 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 31 H 0.03 0.66 7.96 -51.93 -0.41 0.24 16 32 H 0.02 0.57 6.16 -51.93 -0.32 0.25 16 33 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 34 H 0.04 0.60 6.45 -51.93 -0.33 0.26 16 35 H 0.09 1.69 6.32 -51.93 -0.33 1.36 16 36 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.09 1.19 7.86 -51.93 -0.41 0.78 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.08 1.01 7.96 -51.93 -0.41 0.59 16 42 H 0.08 0.82 8.14 -51.92 -0.42 0.40 16 43 H 0.11 1.16 6.41 -51.93 -0.33 0.83 16 44 H 0.09 0.69 7.36 -51.93 -0.38 0.31 16 45 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 46 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.07 1.41 6.05 -51.93 -0.31 1.10 16 48 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 49 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 50 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 51 H 0.36 2.63 7.75 45.56 0.35 2.98 16 LS Contribution 391.32 15.07 5.90 5.90 Total: -1.00 -32.20 391.32 -8.64 -40.83 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -7.62 Total: 4.31 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: -1.40 Total: -1.34 kcal Atomic # 7 Polarization: -54.18 SS G_CDS: 0.34 Total: -53.84 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: -0.83 Total: -11.40 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.20 -8.64 -40.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001509954581.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.261 kcal (2) G-P(sol) polarization free energy of solvation -32.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.46 seconds