Wall clock time and date at job start Tue Mar 31 2020 22:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46929 * 2 1 4 4 C 1.50694 * 109.47107 * 240.00192 * 2 1 3 5 5 H 1.08004 * 119.99783 * 240.00017 * 4 2 1 6 6 C 1.37875 * 120.00179 * 59.99733 * 4 2 1 7 7 N 1.31509 * 120.00326 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99774 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47191 * 90.00514 * 8 6 4 10 10 H 1.48508 * 109.47197 * 209.99846 * 8 6 4 11 11 H 1.48497 * 109.47489 * 330.00225 * 8 6 4 12 12 N 1.46902 * 109.46875 * 119.99872 * 2 1 3 13 13 C 1.46900 * 110.99668 * 176.04722 * 12 2 1 14 14 C 1.38579 * 111.00007 * 299.99984 * 12 2 1 15 15 N 1.31217 * 126.47428 * 341.13661 * 14 12 2 16 16 N 1.28530 * 109.85793 * 179.73057 * 15 14 12 17 17 C 1.30294 * 110.05083 * 0.44972 * 16 15 14 18 18 C 1.50709 * 126.34311 * 179.82330 * 17 16 15 19 19 H 1.09001 * 111.01503 * 176.92074 * 18 17 16 20 20 C 1.55565 * 111.22571 * 52.61854 * 18 17 16 21 21 C 1.54379 * 102.27640 * 207.98199 * 20 18 17 22 22 O 1.43238 * 107.58639 * 21.35683 * 21 20 18 23 23 C 1.43644 * 109.97076 * 1.70941 * 22 21 20 24 24 N 1.36451 * 126.47148 * 161.13379 * 14 12 2 25 25 C 1.46505 * 127.13328 * 0.02562 * 24 14 12 26 26 C 1.53001 * 109.47130 * 269.12247 * 25 24 14 27 27 C 1.52997 * 109.46824 * 60.00206 * 26 25 24 28 28 C 1.52996 * 109.47206 * 180.02562 * 26 25 24 29 29 O 1.42908 * 109.47177 * 300.00698 * 26 25 24 30 30 H 1.08998 * 109.47309 * 60.00287 * 1 2 3 31 31 H 1.09005 * 109.46772 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47402 * 300.00022 * 1 2 3 33 33 H 0.96997 * 120.00272 * 180.02562 * 7 6 4 34 34 H 1.09000 * 109.47409 * 177.70348 * 13 12 2 35 35 H 1.09002 * 109.47176 * 297.70442 * 13 12 2 36 36 H 1.09006 * 109.47129 * 57.70460 * 13 12 2 37 37 H 1.09007 * 110.83967 * 89.78085 * 20 18 17 38 38 H 1.09007 * 111.01096 * 326.25899 * 20 18 17 39 39 H 1.08993 * 109.83240 * 261.84149 * 21 20 18 40 40 H 1.08999 * 109.82765 * 140.86433 * 21 20 18 41 41 H 1.09003 * 110.30634 * 94.49110 * 23 22 21 42 42 H 1.09008 * 110.30783 * 216.55592 * 23 22 21 43 43 H 1.08998 * 109.47695 * 29.12720 * 25 24 14 44 44 H 1.09000 * 109.46949 * 149.12607 * 25 24 14 45 45 H 1.09001 * 109.47661 * 60.00304 * 27 26 25 46 46 H 1.09006 * 109.47203 * 179.97438 * 27 26 25 47 47 H 1.09003 * 109.47641 * 300.00343 * 27 26 25 48 48 H 1.09000 * 109.47261 * 60.00123 * 28 26 25 49 49 H 1.09006 * 109.47158 * 180.02562 * 28 26 25 50 50 H 1.09001 * 109.46878 * 299.99450 * 28 26 25 51 51 H 0.96700 * 113.99653 * 299.99276 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3225 -1.1195 -4.0079 9 1 1.3448 -2.1616 -4.4124 10 1 2.4873 -0.1402 -5.1121 11 1 3.6309 -1.7565 -3.7119 12 7 2.0196 -0.6925 1.1995 13 6 3.4850 -0.7945 1.1871 14 6 1.5753 -0.0641 2.3519 15 7 1.1243 1.1646 2.4460 16 7 0.7941 1.4165 3.6623 17 6 1.0218 0.3753 4.4118 18 6 0.7719 0.2702 5.8943 19 1 1.0009 -0.7311 6.2593 20 6 -0.6870 0.6766 6.2498 21 6 -0.5393 1.1992 7.6949 22 8 0.8342 1.5572 7.8875 23 6 1.5714 1.3449 6.6730 24 7 1.5240 -0.6061 3.6031 25 6 1.9245 -1.9589 3.9979 26 6 0.7202 -2.8972 3.8970 27 6 0.2088 -2.9172 2.4552 28 6 1.1383 -4.3098 4.3099 29 8 -0.3176 -2.4354 4.7641 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 0.7089 1.1613 -3.4844 34 1 3.8236 -1.2748 2.1051 35 1 3.8007 -1.3878 0.3289 36 1 3.9182 0.2034 1.1180 37 1 -1.3497 -0.1881 6.2158 38 1 -1.0457 1.4644 5.5872 39 1 -0.8203 0.4180 8.4012 40 1 -1.1731 2.0744 7.8382 41 1 1.6247 2.2684 6.0965 42 1 2.5742 0.9815 6.8978 43 1 2.7160 -2.3112 3.3365 44 1 2.2888 -1.9447 5.0251 45 1 1.0002 -3.2695 1.7936 46 1 -0.6490 -3.5861 2.3831 47 1 -0.0892 -1.9107 2.1613 48 1 1.5024 -4.2953 5.3372 49 1 0.2804 -4.9784 4.2376 50 1 1.9299 -4.6623 3.6487 51 1 -0.0632 -2.3970 5.6963 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001509954581.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:57 Heat of formation + Delta-G solvation = -21.487448 kcal Electronic energy + Delta-G solvation = -32462.895604 eV Core-core repulsion = 28398.605810 eV Total energy + Delta-G solvation = -4064.289795 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 3.73 seconds Orbital eigenvalues (eV) -44.01831 -40.28526 -39.47428 -38.78816 -35.61213 -34.90129 -34.02010 -32.97857 -31.26025 -30.88221 -29.60760 -28.39671 -27.90351 -27.27906 -26.03509 -24.48060 -23.46463 -23.03556 -22.07687 -21.06922 -20.74658 -18.84759 -18.29048 -17.69855 -17.46163 -17.40601 -16.80725 -16.55484 -16.34082 -16.03112 -15.72826 -15.66988 -15.27317 -15.09524 -14.62910 -14.50769 -14.24853 -13.82525 -13.57662 -13.47830 -13.20411 -13.08287 -13.04279 -12.94236 -12.77972 -12.70370 -12.60889 -12.54687 -12.44640 -12.32557 -12.23538 -12.17885 -12.08577 -12.01341 -11.90069 -11.42780 -11.40096 -11.05682 -10.63692 -10.54976 -10.47511 -10.24596 -9.10972 -8.12055 -6.27245 0.83248 1.32508 1.45729 1.45960 1.56278 1.89896 2.41635 2.79079 3.00137 3.19072 3.21126 3.31955 3.53626 3.60043 3.63397 3.76199 3.98185 4.00792 4.07666 4.13331 4.19307 4.27071 4.35935 4.44935 4.54043 4.68650 4.74401 4.75921 4.80179 4.82693 4.88979 4.90352 4.93028 4.95539 4.96080 5.00038 5.06324 5.08202 5.19087 5.23408 5.30146 5.40415 5.43595 5.58898 5.66069 5.92731 5.96721 6.01835 6.16906 6.62561 6.83501 6.83931 7.41901 7.89814 8.94914 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.015837 B = 0.003711 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.541075 B = 7542.914824 C = 8442.971069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.245 3.755 3 H -0.026 1.026 4 C -0.522 4.522 5 H 0.077 0.923 6 C 0.011 3.989 7 N -0.921 5.921 8 Si 0.968 3.032 9 H -0.276 1.276 10 H -0.290 1.290 11 H -0.258 1.258 12 N -0.449 5.449 13 C 0.042 3.958 14 C 0.373 3.627 15 N -0.371 5.371 16 N -0.329 5.329 17 C 0.193 3.807 18 C -0.017 4.017 19 H 0.135 0.865 20 C -0.137 4.137 21 C 0.054 3.946 22 O -0.394 6.394 23 C 0.067 3.933 24 N -0.460 5.460 25 C 0.073 3.927 26 C 0.124 3.876 27 C -0.133 4.133 28 C -0.165 4.165 29 O -0.565 6.565 30 H 0.059 0.941 31 H 0.026 0.974 32 H 0.013 0.987 33 H 0.262 0.738 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.012 0.988 37 H 0.106 0.894 38 H 0.058 0.942 39 H 0.101 0.899 40 H 0.071 0.929 41 H 0.046 0.954 42 H 0.108 0.892 43 H 0.112 0.888 44 H 0.134 0.866 45 H 0.077 0.923 46 H 0.054 0.946 47 H 0.027 0.973 48 H 0.090 0.910 49 H 0.067 0.933 50 H 0.077 0.923 51 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.842 -11.915 21.939 25.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.139 3.861 3 H -0.009 1.009 4 C -0.560 4.560 5 H 0.095 0.905 6 C -0.188 4.188 7 N -0.560 5.560 8 Si 0.793 3.207 9 H -0.202 1.202 10 H -0.216 1.216 11 H -0.182 1.182 12 N -0.173 5.173 13 C -0.105 4.105 14 C 0.016 3.984 15 N -0.214 5.214 16 N -0.167 5.167 17 C -0.076 4.076 18 C -0.038 4.038 19 H 0.153 0.847 20 C -0.176 4.176 21 C -0.022 4.022 22 O -0.314 6.314 23 C -0.011 4.011 24 N -0.154 5.154 25 C -0.049 4.049 26 C 0.082 3.918 27 C -0.191 4.191 28 C -0.223 4.223 29 O -0.373 6.373 30 H 0.078 0.922 31 H 0.045 0.955 32 H 0.032 0.968 33 H 0.071 0.929 34 H 0.103 0.897 35 H 0.112 0.888 36 H 0.030 0.970 37 H 0.124 0.876 38 H 0.077 0.923 39 H 0.119 0.881 40 H 0.089 0.911 41 H 0.064 0.936 42 H 0.126 0.874 43 H 0.130 0.870 44 H 0.152 0.848 45 H 0.096 0.904 46 H 0.074 0.926 47 H 0.046 0.954 48 H 0.109 0.891 49 H 0.086 0.914 50 H 0.096 0.904 51 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 1.949 -10.780 20.986 23.673 hybrid contribution 0.652 -0.242 -1.077 1.283 sum 2.601 -11.022 19.909 22.904 Atomic orbital electron populations 1.21558 0.97893 0.98223 0.99302 1.18877 0.92118 0.90609 0.84520 1.00874 1.21357 1.31954 1.12834 0.89880 0.90487 1.25800 0.95145 0.95573 1.02269 1.70090 1.37479 1.24232 1.24200 0.85404 0.79138 0.77925 0.78224 1.20206 1.21562 1.18192 1.59155 1.11619 1.48366 0.98201 1.22388 0.83961 1.00401 1.03750 1.22847 1.00992 0.88376 0.86173 1.74695 1.21670 1.12715 1.12341 1.73802 1.20719 1.24768 0.97444 1.24549 1.01217 0.85604 0.96188 1.21281 0.97440 1.02589 0.82514 0.84717 1.23156 0.95139 1.02673 0.96586 1.23278 0.82587 1.00796 0.95586 1.88395 1.21255 1.88277 1.33457 1.23349 0.96158 0.96806 0.84786 1.46121 1.49317 1.13738 1.06199 1.23118 0.99285 0.77714 1.04773 1.21506 0.86053 0.93339 0.90864 1.21693 1.01805 1.01095 0.94476 1.22348 1.02918 0.93452 1.03546 1.86709 1.39909 1.89072 1.21646 0.92229 0.95467 0.96801 0.92931 0.89730 0.88774 0.96966 0.87595 0.92326 0.88064 0.91122 0.93583 0.87401 0.86961 0.84772 0.90446 0.92650 0.95371 0.89136 0.91415 0.90391 0.76483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -6.08 8.73 71.98 0.63 -5.45 16 2 C 0.24 12.87 1.72 44.17 0.08 12.95 16 3 H -0.03 -1.64 7.93 -2.39 -0.02 -1.66 16 4 C -0.52 -27.72 7.95 25.60 0.20 -27.51 16 5 H 0.08 3.81 6.40 -2.91 -0.02 3.79 16 6 C 0.01 0.62 5.30 84.66 0.45 1.07 16 7 N -0.92 -54.44 11.32 21.45 0.24 -54.19 16 8 Si 0.97 42.58 29.54 68.60 2.03 44.61 16 9 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 10 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 11 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 12 N -0.45 -18.73 4.02 -711.00 -2.86 -21.59 16 13 C 0.04 1.48 9.02 127.69 1.15 2.63 16 14 C 0.37 15.15 4.49 260.11 1.17 16.32 16 15 N -0.37 -17.71 9.91 -58.01 -0.57 -18.28 16 16 N -0.33 -13.61 11.90 -49.54 -0.59 -14.20 16 17 C 0.19 5.85 6.42 137.65 0.88 6.73 16 18 C -0.02 -0.33 3.03 -9.99 -0.03 -0.36 16 19 H 0.14 1.43 5.84 -2.39 -0.01 1.41 16 20 C -0.14 -2.61 6.50 31.95 0.21 -2.40 16 21 C 0.05 0.85 7.80 72.45 0.56 1.41 16 22 O -0.39 -8.12 11.36 -148.98 -1.69 -9.82 16 23 C 0.07 1.36 7.24 72.64 0.53 1.88 16 24 N -0.46 -13.57 2.41 -514.84 -1.24 -14.81 16 25 C 0.07 1.33 4.98 86.38 0.43 1.76 16 26 C 0.12 2.29 1.17 -10.80 -0.01 2.27 16 27 C -0.13 -3.80 8.05 71.98 0.58 -3.22 16 28 C -0.16 -1.79 8.81 71.98 0.63 -1.16 16 29 O -0.57 -10.49 12.10 -148.98 -1.80 -12.30 16 30 H 0.06 3.56 6.07 -2.39 -0.01 3.55 16 31 H 0.03 1.41 7.96 -2.38 -0.02 1.39 16 32 H 0.01 0.73 6.16 -2.39 -0.01 0.72 16 33 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 34 H 0.08 2.22 6.45 -2.39 -0.02 2.21 16 35 H 0.09 3.30 6.32 -2.39 -0.02 3.28 16 36 H 0.01 0.46 8.14 -2.38 -0.02 0.44 16 37 H 0.11 1.65 8.14 -2.38 -0.02 1.63 16 38 H 0.06 1.53 7.86 -2.38 -0.02 1.52 16 39 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.05 1.22 7.96 -2.39 -0.02 1.20 16 42 H 0.11 1.69 8.14 -2.38 -0.02 1.68 16 43 H 0.11 1.97 6.41 -2.39 -0.02 1.96 16 44 H 0.13 1.22 7.36 -2.39 -0.02 1.20 16 45 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 46 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 47 H 0.03 1.06 6.05 -2.39 -0.01 1.04 16 48 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 49 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 50 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 51 H 0.39 3.33 7.75 -74.06 -0.57 2.75 16 Total: -1.00 -78.28 391.32 1.34 -76.94 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: 0.37 Total: 16.72 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: 7.46 Total: 6.92 kcal Atomic # 7 Polarization: -118.06 SS G_CDS: -5.02 Total: -123.08 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: -3.49 Total: -22.11 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Total: -78.28 1.34 -76.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001509954581.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.453 kcal (2) G-P(sol) polarization free energy of solvation -78.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.73 seconds