Wall clock time and date at job start Tue Mar 31 2020 22:30:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42901 * 1
3 3 N 1.46302 * 113.99570 * 2 1
4 4 C 1.46902 * 111.00070 * 243.95282 * 3 2 1
5 5 C 1.38584 * 111.00107 * 119.99790 * 3 2 1
6 6 N 1.31216 * 126.47026 * 104.12320 * 5 3 2
7 7 N 1.28527 * 109.85993 * 180.26221 * 6 5 3
8 8 C 1.30303 * 110.05056 * 359.74571 * 7 6 5
9 9 C 1.50697 * 126.34766 * 180.02562 * 8 7 6
10 10 H 1.09000 * 109.47508 * 179.97438 * 9 8 7
11 11 C 1.53001 * 109.47136 * 299.95848 * 9 8 7
12 12 C 1.53005 * 109.47155 * 59.95483 * 9 8 7
13 13 C 1.50702 * 109.47344 * 175.00093 * 12 9 8
14 14 H 1.08008 * 119.99437 * 0.02562 * 13 12 9
15 15 C 1.37870 * 120.00204 * 179.97438 * 13 12 9
16 16 N 1.31515 * 119.99878 * 0.02562 * 15 13 12
17 17 Si 1.86796 * 120.00103 * 180.02562 * 15 13 12
18 18 H 1.48497 * 109.47260 * 359.97438 * 17 15 13
19 19 H 1.48494 * 109.47705 * 120.00073 * 17 15 13
20 20 H 1.48508 * 109.47142 * 240.00103 * 17 15 13
21 21 N 1.36446 * 126.47294 * 283.95678 * 5 3 2
22 22 C 1.46504 * 127.13497 * 0.02562 * 21 5 3
23 23 C 1.53000 * 109.46969 * 269.68256 * 22 21 5
24 24 H 1.09002 * 109.47903 * 55.00344 * 23 22 21
25 25 C 1.53092 * 109.47697 * 175.02670 * 23 22 21
26 26 C 1.53207 * 109.14859 * 177.59587 * 25 23 22
27 27 C 1.53178 * 109.03992 * 303.02293 * 26 25 23
28 28 C 1.53097 * 109.16320 * 56.98185 * 27 26 25
29 29 O 1.42898 * 109.41490 * 302.39102 * 28 27 26
30 30 H 1.09002 * 109.46637 * 179.97438 * 1 2 3
31 31 H 1.08990 * 109.47441 * 300.00027 * 1 2 3
32 32 H 1.08998 * 109.47113 * 60.00391 * 1 2 3
33 33 H 1.08998 * 109.46826 * 296.05113 * 4 3 2
34 34 H 1.09002 * 109.47206 * 56.04773 * 4 3 2
35 35 H 1.08997 * 109.47084 * 176.04758 * 4 3 2
36 36 H 1.09000 * 109.47287 * 59.99418 * 11 9 8
37 37 H 1.09003 * 109.46994 * 180.02562 * 11 9 8
38 38 H 1.09005 * 109.46773 * 299.99631 * 11 9 8
39 39 H 1.09004 * 109.47018 * 295.00286 * 12 9 8
40 40 H 1.09000 * 109.46849 * 54.99828 * 12 9 8
41 41 H 0.97004 * 120.00003 * 180.02562 * 16 15 13
42 42 H 1.09001 * 109.47033 * 149.68753 * 22 21 5
43 43 H 1.08998 * 109.47323 * 29.68619 * 22 21 5
44 44 H 1.08999 * 109.52366 * 297.50656 * 25 23 22
45 45 H 1.08992 * 109.52532 * 57.70335 * 25 23 22
46 46 H 1.09004 * 109.54239 * 183.15817 * 26 25 23
47 47 H 1.09000 * 109.61720 * 62.93376 * 26 25 23
48 48 H 1.09003 * 109.52669 * 297.07816 * 27 26 25
49 49 H 1.08997 * 109.52447 * 176.88713 * 27 26 25
50 50 H 1.08995 * 109.47859 * 182.40411 * 28 27 26
51 51 H 1.09000 * 109.47425 * 62.37437 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 7 2.0240 1.3366 0.0000
4 6 2.7882 1.5726 -1.2322
5 6 2.8169 1.5273 1.1205
6 7 4.1284 1.5126 1.1595
7 7 4.5317 1.7191 2.3623
8 6 3.5100 1.8818 3.1544
9 6 3.5625 2.1462 4.6370
10 1 2.5483 2.2371 5.0261
11 6 4.2748 0.9870 5.3369
12 6 4.3271 3.4458 4.8966
13 6 4.2746 3.7747 6.3664
14 1 3.7487 3.1217 7.0473
15 6 4.8986 4.9084 6.8419
16 7 5.5393 5.7031 6.0128
17 14 4.8340 5.3156 8.6638
18 1 4.0567 4.2707 9.3773
19 1 6.2143 5.3654 9.2092
20 1 4.1790 6.6349 8.8533
21 7 2.3813 1.7689 2.3908
22 6 0.9924 1.8781 2.8438
23 6 0.5379 3.3359 2.7481
24 1 0.6935 3.6992 1.7323
25 6 -0.9484 3.4315 3.1026
26 6 -1.3809 4.9007 3.0631
27 6 -0.5010 5.7067 4.0235
28 6 0.9680 5.5229 3.6334
29 8 1.2963 4.1324 3.6606
30 1 -0.3633 -1.0277 -0.0005
31 1 -0.3634 0.5138 0.8899
32 1 -0.3633 0.5138 -0.8900
33 1 3.6286 0.8799 -1.2768
34 1 2.1422 1.4162 -2.0960
35 1 3.1610 2.5969 -1.2379
36 1 5.2889 0.8957 4.9479
37 1 4.3123 1.1781 6.4094
38 1 3.7300 0.0611 5.1520
39 1 5.3656 3.3242 4.5884
40 1 3.8714 4.2555 4.3266
41 1 5.9787 6.5006 6.3474
42 1 0.9201 1.5421 3.8782
43 1 0.3551 1.2567 2.2146
44 1 -1.5324 2.8601 2.3812
45 1 -1.1107 3.0309 4.1032
46 1 -2.4240 4.9820 3.3690
47 1 -1.2664 5.2888 2.0510
48 1 -0.6543 5.3519 5.0427
49 1 -0.7652 6.7623 3.9607
50 1 1.6014 6.0599 4.3394
51 1 1.1291 5.9149 2.6292
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001526483801.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:30:31
Heat of formation + Delta-G solvation = 31.160991 kcal
Electronic energy + Delta-G solvation = -32194.693872 eV
Core-core repulsion = 28132.687085 eV
Total energy + Delta-G solvation = -4062.006787 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.211 amu
Computer time = 1.10 seconds
Orbital eigenvalues (eV)
-42.59225 -39.33987 -37.67484 -35.43405 -34.83598 -33.92515 -33.58754 -32.08763
-31.41816 -28.63192 -27.47222 -26.83525 -26.78280 -25.22772 -24.25010 -23.98954
-22.73254 -21.81391 -20.57766 -20.29371 -19.00544 -17.88602 -16.76003 -16.56313
-16.18428 -16.00079 -15.95425 -15.35769 -15.15598 -14.61794 -14.52880 -14.40265
-14.16124 -13.92044 -13.44644 -13.14457 -13.11722 -12.91200 -12.73899 -12.54894
-12.35026 -12.25147 -11.95051 -11.68225 -11.40760 -11.22746 -11.17217 -11.04192
-10.97370 -10.86918 -10.68043 -10.46876 -10.43557 -10.37692 -10.26127 -9.91546
-9.67186 -9.65911 -9.32068 -9.19623 -8.98088 -8.27538 -8.18379 -5.91269
-3.92512 1.47704 2.37398 2.96705 3.34230 3.42406 3.44782 3.47804
3.77546 4.41643 4.50830 4.53919 4.72008 4.74149 4.77300 4.92956
4.97034 5.05774 5.11412 5.16451 5.19809 5.24097 5.29906 5.37382
5.44319 5.45154 5.50419 5.51697 5.60925 5.66001 5.71463 5.78537
5.81015 5.84184 5.94231 6.12385 6.17688 6.22251 6.24949 6.27641
6.37110 6.57699 6.78325 6.81923 7.03962 7.11770 7.35335 7.41327
7.80590 7.95660 8.11124 8.47538 9.12641 9.17814 9.69236 11.19909
Molecular weight = 338.21amu
Principal moments of inertia in cm(-1)
A = 0.010935 B = 0.004497 C = 0.003575
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2560.047363 B = 6225.334445 C = 7830.852295
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.033 3.967
2 O -0.259 6.259
3 N -0.283 5.283
4 C 0.032 3.968
5 C 0.295 3.705
6 N -0.288 5.288
7 N -0.288 5.288
8 C 0.246 3.754
9 C 0.001 3.999
10 H 0.078 0.922
11 C -0.129 4.129
12 C 0.045 3.955
13 C -0.508 4.508
14 H 0.056 0.944
15 C 0.059 3.941
16 N -0.892 5.892
17 Si 0.886 3.114
18 H -0.273 1.273
19 H -0.285 1.285
20 H -0.286 1.286
21 N -0.459 5.459
22 C 0.117 3.883
23 C 0.074 3.926
24 H 0.063 0.937
25 C -0.146 4.146
26 C -0.118 4.118
27 C -0.157 4.157
28 C 0.065 3.935
29 O -0.350 6.350
30 H 0.094 0.906
31 H 0.044 0.956
32 H 0.050 0.950
33 H 0.061 0.939
34 H 0.082 0.918
35 H 0.094 0.906
36 H 0.060 0.940
37 H 0.075 0.925
38 H 0.029 0.971
39 H 0.025 0.975
40 H 0.024 0.976
41 H 0.258 0.742
42 H 0.104 0.896
43 H 0.104 0.896
44 H 0.071 0.929
45 H 0.076 0.924
46 H 0.066 0.934
47 H 0.061 0.939
48 H 0.074 0.926
49 H 0.071 0.929
50 H 0.105 0.895
51 H 0.043 0.957
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -17.431 -5.896 -10.726 21.299
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.065 4.065
2 O -0.254 6.254
3 N -0.054 5.054
4 C -0.115 4.115
5 C -0.061 4.061
6 N -0.138 5.138
7 N -0.128 5.128
8 C -0.020 4.020
9 C -0.020 4.020
10 H 0.096 0.904
11 C -0.187 4.187
12 C 0.007 3.993
13 C -0.547 4.547
14 H 0.074 0.926
15 C -0.142 4.142
16 N -0.531 5.531
17 Si 0.714 3.286
18 H -0.198 1.198
19 H -0.211 1.211
20 H -0.213 1.213
21 N -0.153 5.153
22 C -0.006 4.006
23 C 0.014 3.986
24 H 0.081 0.919
25 C -0.184 4.184
26 C -0.156 4.156
27 C -0.194 4.194
28 C -0.011 4.011
29 O -0.269 6.269
30 H 0.112 0.888
31 H 0.063 0.937
32 H 0.069 0.931
33 H 0.080 0.920
34 H 0.101 0.899
35 H 0.113 0.887
36 H 0.079 0.921
37 H 0.094 0.906
38 H 0.048 0.952
39 H 0.043 0.957
40 H 0.042 0.958
41 H 0.068 0.932
42 H 0.122 0.878
43 H 0.122 0.878
44 H 0.089 0.911
45 H 0.095 0.905
46 H 0.085 0.915
47 H 0.080 0.920
48 H 0.093 0.907
49 H 0.089 0.911
50 H 0.123 0.877
51 H 0.061 0.939
Dipole moment (debyes) X Y Z Total
from point charges -16.140 -5.865 -11.140 20.469
hybrid contribution -1.282 0.264 1.052 1.679
sum -17.421 -5.601 -10.088 20.896
Atomic orbital electron populations
1.22812 0.80809 1.02192 1.00663 1.90934 1.20679 1.16956 1.96863
1.64298 1.31600 1.09152 1.00356 1.22545 0.97491 1.03230 0.88254
1.22278 0.89889 1.08581 0.85324 1.74509 1.06106 1.18159 1.14981
1.74102 1.24171 1.19156 0.95364 1.25774 0.80185 0.98171 0.97890
1.20013 1.01817 0.99860 0.80314 0.90398 1.21730 1.00382 0.94902
1.01728 1.19040 0.95064 0.88599 0.96612 1.21164 1.33058 1.07602
0.92852 0.92570 1.24942 0.95600 0.96446 0.97162 1.69999 1.35073
1.14021 1.34038 0.86638 0.77683 0.78131 0.86118 1.19803 1.21146
1.21277 1.46138 1.08479 1.53535 1.07132 1.22011 0.79318 0.96562
1.02692 1.22373 0.91033 0.90821 0.94340 0.91923 1.22130 0.95477
0.97845 1.02952 1.21544 0.99541 0.94609 0.99864 1.22219 0.96347
1.00462 1.00415 1.22565 0.94931 0.82451 1.01185 1.88196 1.60294
1.18245 1.60119 0.88811 0.93728 0.93133 0.92004 0.89924 0.88727
0.92129 0.90633 0.95173 0.95652 0.95792 0.93230 0.87790 0.87819
0.91074 0.90506 0.91524 0.92001 0.90730 0.91068 0.87672 0.93872
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.28 11.38 101.05 1.15 1.43 16
2 O -0.26 -3.46 10.88 -13.92 -0.15 -3.61 16
3 N -0.28 -4.03 5.09 -68.05 -0.35 -4.38 16
4 C 0.03 0.39 9.65 60.07 0.58 0.97 16
5 C 0.30 5.27 7.50 -318.88 -2.39 2.88 16
6 N -0.29 -6.02 11.35 30.31 0.34 -5.67 16
7 N -0.29 -6.55 12.18 32.99 0.40 -6.15 16
8 C 0.25 5.10 6.47 -154.01 -1.00 4.11 16
9 C 0.00 0.02 2.45 -91.77 -0.22 -0.20 16
10 H 0.08 1.57 6.66 -51.93 -0.35 1.23 16
11 C -0.13 -2.54 8.98 37.16 0.33 -2.20 16
12 C 0.04 1.16 4.43 -27.88 -0.12 1.04 16
13 C -0.51 -13.80 8.41 -34.44 -0.29 -14.09 16
14 H 0.06 1.47 7.06 -52.48 -0.37 1.10 16
15 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16
16 N -0.89 -26.57 13.29 55.43 0.74 -25.83 16
17 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16
18 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16
19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16
20 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16
21 N -0.46 -8.02 2.76 -114.08 -0.31 -8.33 16
22 C 0.12 1.56 5.55 -4.04 -0.02 1.54 16
23 C 0.07 0.96 2.89 -26.68 -0.08 0.88 16
24 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16
25 C -0.15 -1.40 5.42 -26.58 -0.14 -1.55 16
26 C -0.12 -1.11 6.03 -26.53 -0.16 -1.27 16
27 C -0.16 -1.78 6.14 -26.59 -0.16 -1.94 16
28 C 0.07 0.97 6.84 37.21 0.25 1.22 16
29 O -0.35 -5.87 9.47 -35.23 -0.33 -6.20 16
30 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16
31 H 0.04 0.36 5.52 -51.93 -0.29 0.07 16
32 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16
33 H 0.06 0.82 7.92 -51.93 -0.41 0.40 16
34 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16
35 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16
36 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16
37 H 0.07 1.48 6.95 -51.93 -0.36 1.12 16
38 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16
39 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16
40 H 0.02 0.67 7.90 -51.93 -0.41 0.26 16
41 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16
42 H 0.10 1.33 7.23 -51.93 -0.38 0.95 16
43 H 0.10 1.11 5.35 -51.93 -0.28 0.84 16
44 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16
45 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16
46 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16
47 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16
48 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16
49 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16
50 H 0.11 1.77 8.14 -51.93 -0.42 1.35 16
51 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16
LS Contribution 406.61 15.07 6.13 6.13
Total: -1.00 -33.91 406.61 -9.66 -43.57
By element:
Atomic # 1 Polarization: 8.59 SS G_CDS: -8.74 Total: -0.14 kcal
Atomic # 6 Polarization: -3.26 SS G_CDS: -2.37 Total: -5.63 kcal
Atomic # 7 Polarization: -51.18 SS G_CDS: 0.82 Total: -50.36 kcal
Atomic # 8 Polarization: -9.33 SS G_CDS: -0.48 Total: -9.81 kcal
Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal
Total LS contribution 6.13 Total: 6.13 kcal
Total: -33.91 -9.66 -43.57 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001526483801.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 74.731 kcal
(2) G-P(sol) polarization free energy of solvation -33.905 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.825 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.664 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.570 kcal
(6) G-S(sol) free energy of system = (1) + (5) 31.161 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.10 seconds