Wall clock time and date at job start Tue Mar 31 2020 22:30:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42901 * 1
3 3 N 1.46302 * 113.99570 * 2 1
4 4 C 1.46902 * 111.00070 * 243.95282 * 3 2 1
5 5 C 1.38584 * 111.00107 * 119.99790 * 3 2 1
6 6 N 1.31216 * 126.47026 * 104.12320 * 5 3 2
7 7 N 1.28527 * 109.85993 * 180.26221 * 6 5 3
8 8 C 1.30303 * 110.05056 * 359.74571 * 7 6 5
9 9 C 1.50697 * 126.34766 * 180.02562 * 8 7 6
10 10 H 1.09000 * 109.47508 * 179.97438 * 9 8 7
11 11 C 1.53001 * 109.47136 * 299.95848 * 9 8 7
12 12 C 1.53005 * 109.47155 * 59.95483 * 9 8 7
13 13 C 1.50702 * 109.47344 * 175.00093 * 12 9 8
14 14 H 1.08008 * 119.99437 * 0.02562 * 13 12 9
15 15 C 1.37870 * 120.00204 * 179.97438 * 13 12 9
16 16 N 1.31515 * 119.99878 * 0.02562 * 15 13 12
17 17 Si 1.86796 * 120.00103 * 180.02562 * 15 13 12
18 18 H 1.48497 * 109.47260 * 359.97438 * 17 15 13
19 19 H 1.48494 * 109.47705 * 120.00073 * 17 15 13
20 20 H 1.48508 * 109.47142 * 240.00103 * 17 15 13
21 21 N 1.36446 * 126.47294 * 283.95678 * 5 3 2
22 22 C 1.46504 * 127.13497 * 0.02562 * 21 5 3
23 23 C 1.53000 * 109.46969 * 269.68256 * 22 21 5
24 24 H 1.09002 * 109.47903 * 55.00344 * 23 22 21
25 25 C 1.53092 * 109.47697 * 175.02670 * 23 22 21
26 26 C 1.53207 * 109.14859 * 177.59587 * 25 23 22
27 27 C 1.53178 * 109.03992 * 303.02293 * 26 25 23
28 28 C 1.53097 * 109.16320 * 56.98185 * 27 26 25
29 29 O 1.42898 * 109.41490 * 302.39102 * 28 27 26
30 30 H 1.09002 * 109.46637 * 179.97438 * 1 2 3
31 31 H 1.08990 * 109.47441 * 300.00027 * 1 2 3
32 32 H 1.08998 * 109.47113 * 60.00391 * 1 2 3
33 33 H 1.08998 * 109.46826 * 296.05113 * 4 3 2
34 34 H 1.09002 * 109.47206 * 56.04773 * 4 3 2
35 35 H 1.08997 * 109.47084 * 176.04758 * 4 3 2
36 36 H 1.09000 * 109.47287 * 59.99418 * 11 9 8
37 37 H 1.09003 * 109.46994 * 180.02562 * 11 9 8
38 38 H 1.09005 * 109.46773 * 299.99631 * 11 9 8
39 39 H 1.09004 * 109.47018 * 295.00286 * 12 9 8
40 40 H 1.09000 * 109.46849 * 54.99828 * 12 9 8
41 41 H 0.97004 * 120.00003 * 180.02562 * 16 15 13
42 42 H 1.09001 * 109.47033 * 149.68753 * 22 21 5
43 43 H 1.08998 * 109.47323 * 29.68619 * 22 21 5
44 44 H 1.08999 * 109.52366 * 297.50656 * 25 23 22
45 45 H 1.08992 * 109.52532 * 57.70335 * 25 23 22
46 46 H 1.09004 * 109.54239 * 183.15817 * 26 25 23
47 47 H 1.09000 * 109.61720 * 62.93376 * 26 25 23
48 48 H 1.09003 * 109.52669 * 297.07816 * 27 26 25
49 49 H 1.08997 * 109.52447 * 176.88713 * 27 26 25
50 50 H 1.08995 * 109.47859 * 182.40411 * 28 27 26
51 51 H 1.09000 * 109.47425 * 62.37437 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 7 2.0240 1.3366 0.0000
4 6 2.7882 1.5726 -1.2322
5 6 2.8169 1.5273 1.1205
6 7 4.1284 1.5126 1.1595
7 7 4.5317 1.7191 2.3623
8 6 3.5100 1.8818 3.1544
9 6 3.5625 2.1462 4.6370
10 1 2.5483 2.2371 5.0261
11 6 4.2748 0.9870 5.3369
12 6 4.3271 3.4458 4.8966
13 6 4.2746 3.7747 6.3664
14 1 3.7487 3.1217 7.0473
15 6 4.8986 4.9084 6.8419
16 7 5.5393 5.7031 6.0128
17 14 4.8340 5.3156 8.6638
18 1 4.0567 4.2707 9.3773
19 1 6.2143 5.3654 9.2092
20 1 4.1790 6.6349 8.8533
21 7 2.3813 1.7689 2.3908
22 6 0.9924 1.8781 2.8438
23 6 0.5379 3.3359 2.7481
24 1 0.6935 3.6992 1.7323
25 6 -0.9484 3.4315 3.1026
26 6 -1.3809 4.9007 3.0631
27 6 -0.5010 5.7067 4.0235
28 6 0.9680 5.5229 3.6334
29 8 1.2963 4.1324 3.6606
30 1 -0.3633 -1.0277 -0.0005
31 1 -0.3634 0.5138 0.8899
32 1 -0.3633 0.5138 -0.8900
33 1 3.6286 0.8799 -1.2768
34 1 2.1422 1.4162 -2.0960
35 1 3.1610 2.5969 -1.2379
36 1 5.2889 0.8957 4.9479
37 1 4.3123 1.1781 6.4094
38 1 3.7300 0.0611 5.1520
39 1 5.3656 3.3242 4.5884
40 1 3.8714 4.2555 4.3266
41 1 5.9787 6.5006 6.3474
42 1 0.9201 1.5421 3.8782
43 1 0.3551 1.2567 2.2146
44 1 -1.5324 2.8601 2.3812
45 1 -1.1107 3.0309 4.1032
46 1 -2.4240 4.9820 3.3690
47 1 -1.2664 5.2888 2.0510
48 1 -0.6543 5.3519 5.0427
49 1 -0.7652 6.7623 3.9607
50 1 1.6014 6.0599 4.3394
51 1 1.1291 5.9149 2.6292
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001526483801.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:30:30
Heat of formation + Delta-G solvation = 11.850925 kcal
Electronic energy + Delta-G solvation = -32195.531219 eV
Core-core repulsion = 28132.687085 eV
Total energy + Delta-G solvation = -4062.844134 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.211 amu
Computer time = 1.11 seconds
Orbital eigenvalues (eV)
-44.06477 -40.40147 -38.74597 -37.08868 -36.22515 -35.12076 -34.54627 -34.08793
-32.55557 -30.18103 -28.80077 -28.50596 -27.62411 -26.32544 -25.84815 -25.24433
-23.95239 -23.46469 -21.85828 -21.21872 -20.61617 -19.04745 -18.53858 -17.95672
-17.43622 -17.27935 -17.05353 -16.52177 -16.38392 -16.27194 -15.64950 -15.52128
-15.38180 -15.14749 -14.87548 -14.36461 -14.31380 -14.12207 -13.79188 -13.71923
-13.67310 -13.48755 -13.32460 -12.96077 -12.79462 -12.76139 -12.73963 -12.42048
-12.29141 -12.22135 -12.11256 -11.93047 -11.88104 -11.58954 -11.49931 -11.40441
-11.22588 -11.10266 -10.99913 -10.67485 -10.48052 -10.36111 -9.66257 -8.09040
-6.18413 0.23920 1.02667 1.43918 1.45422 1.57275 1.58420 2.11582
2.47569 2.71107 3.25233 3.37058 3.42039 3.53971 3.73308 3.85384
3.89631 3.96044 3.99562 4.06899 4.14423 4.21438 4.27687 4.43403
4.47502 4.48981 4.51465 4.57920 4.59066 4.61065 4.70390 4.75928
4.82869 4.84562 4.87897 4.91647 4.95597 5.06878 5.11563 5.12146
5.19114 5.21618 5.33160 5.39429 5.45030 5.60702 5.64429 5.80763
5.92761 6.03195 6.30170 6.31529 6.96105 7.48754 7.65462 9.03639
Molecular weight = 338.21amu
Principal moments of inertia in cm(-1)
A = 0.010935 B = 0.004497 C = 0.003575
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2560.047363 B = 6225.334445 C = 7830.852295
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.021 3.979
2 O -0.269 6.269
3 N -0.279 5.279
4 C 0.030 3.970
5 C 0.314 3.686
6 N -0.327 5.327
7 N -0.329 5.329
8 C 0.231 3.769
9 C 0.015 3.985
10 H 0.091 0.909
11 C -0.122 4.122
12 C 0.063 3.937
13 C -0.516 4.516
14 H 0.070 0.930
15 C 0.002 3.998
16 N -0.936 5.936
17 Si 0.959 3.041
18 H -0.255 1.255
19 H -0.285 1.285
20 H -0.282 1.282
21 N -0.453 5.453
22 C 0.109 3.891
23 C 0.072 3.928
24 H 0.053 0.947
25 C -0.137 4.137
26 C -0.114 4.114
27 C -0.149 4.149
28 C 0.063 3.937
29 O -0.387 6.387
30 H 0.120 0.880
31 H 0.054 0.946
32 H 0.067 0.933
33 H 0.046 0.954
34 H 0.120 0.880
35 H 0.089 0.911
36 H 0.040 0.960
37 H 0.075 0.925
38 H 0.060 0.940
39 H -0.020 1.020
40 H -0.011 1.011
41 H 0.259 0.741
42 H 0.111 0.889
43 H 0.136 0.864
44 H 0.104 0.896
45 H 0.080 0.920
46 H 0.092 0.908
47 H 0.066 0.934
48 H 0.068 0.932
49 H 0.084 0.916
50 H 0.068 0.932
51 H 0.041 0.959
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -21.467 -7.349 -10.650 25.065
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.075 4.075
2 O -0.267 6.267
3 N -0.049 5.049
4 C -0.117 4.117
5 C -0.043 4.043
6 N -0.176 5.176
7 N -0.169 5.169
8 C -0.038 4.038
9 C -0.006 4.006
10 H 0.109 0.891
11 C -0.180 4.180
12 C 0.025 3.975
13 C -0.554 4.554
14 H 0.088 0.912
15 C -0.195 4.195
16 N -0.577 5.577
17 Si 0.784 3.216
18 H -0.179 1.179
19 H -0.211 1.211
20 H -0.208 1.208
21 N -0.147 5.147
22 C -0.012 4.012
23 C 0.014 3.986
24 H 0.071 0.929
25 C -0.175 4.175
26 C -0.152 4.152
27 C -0.186 4.186
28 C -0.014 4.014
29 O -0.307 6.307
30 H 0.138 0.862
31 H 0.072 0.928
32 H 0.086 0.914
33 H 0.065 0.935
34 H 0.138 0.862
35 H 0.108 0.892
36 H 0.060 0.940
37 H 0.094 0.906
38 H 0.079 0.921
39 H -0.001 1.001
40 H 0.007 0.993
41 H 0.068 0.932
42 H 0.129 0.871
43 H 0.154 0.846
44 H 0.122 0.878
45 H 0.099 0.901
46 H 0.110 0.890
47 H 0.085 0.915
48 H 0.087 0.913
49 H 0.102 0.898
50 H 0.086 0.914
51 H 0.060 0.940
Dipole moment (debyes) X Y Z Total
from point charges -20.201 -7.325 -11.062 24.168
hybrid contribution -0.118 0.682 0.859 1.103
sum -20.318 -6.643 -10.203 23.687
Atomic orbital electron populations
1.23191 0.78156 1.04255 1.01935 1.90942 1.23557 1.15216 1.96985
1.64406 1.30513 1.10541 0.99456 1.22674 0.97832 1.02558 0.88612
1.22734 0.89535 1.05801 0.86238 1.74405 1.08141 1.20561 1.14454
1.73980 1.26029 1.20389 0.96530 1.25437 0.81196 0.99498 0.97653
1.19702 1.01649 0.97835 0.81421 0.89110 1.21651 0.99570 0.95620
1.01205 1.18696 0.92726 0.90237 0.95803 1.21526 1.32650 1.07729
0.93478 0.91198 1.25877 0.95113 0.96332 1.02164 1.70167 1.36281
1.14666 1.36555 0.85489 0.77736 0.78307 0.80057 1.17883 1.21126
1.20806 1.46272 1.09307 1.52492 1.06581 1.22468 0.77433 0.97474
1.03815 1.22541 0.93101 0.89821 0.93186 0.92909 1.22121 0.92746
0.98574 1.04102 1.21560 1.00206 0.93936 0.99450 1.22144 0.93957
1.01879 1.00668 1.22507 0.96945 0.81781 1.00135 1.88129 1.62157
1.19070 1.61330 0.86244 0.92785 0.91447 0.93493 0.86200 0.89247
0.94035 0.90645 0.92119 1.00137 0.99282 0.93244 0.87055 0.84622
0.87760 0.90129 0.88965 0.91512 0.91346 0.89766 0.91351 0.94045
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.27 11.38 113.37 1.29 1.56 16
2 O -0.27 -6.41 10.88 -50.17 -0.55 -6.95 16
3 N -0.28 -7.46 5.09 -369.22 -1.88 -9.34 16
4 C 0.03 0.69 9.65 127.69 1.23 1.92 16
5 C 0.31 11.18 7.50 260.11 1.95 13.13 16
6 N -0.33 -14.18 11.35 -58.01 -0.66 -14.83 16
7 N -0.33 -15.80 12.18 -49.54 -0.60 -16.40 16
8 C 0.23 9.87 6.47 137.64 0.89 10.76 16
9 C 0.01 0.65 2.45 -11.54 -0.03 0.62 16
10 H 0.09 3.68 6.66 -2.39 -0.02 3.66 16
11 C -0.12 -4.85 8.98 71.98 0.65 -4.20 16
12 C 0.06 3.49 4.43 29.85 0.13 3.63 16
13 C -0.52 -28.80 8.41 25.60 0.22 -28.59 16
14 H 0.07 3.64 7.06 -2.91 -0.02 3.62 16
15 C 0.00 0.13 5.46 84.65 0.46 0.59 16
16 N -0.94 -58.31 13.29 21.44 0.28 -58.02 16
17 Si 0.96 44.19 29.54 68.60 2.03 46.22 16
18 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16
19 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16
20 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16
21 N -0.45 -15.73 2.76 -514.85 -1.42 -17.15 16
22 C 0.11 2.68 5.55 86.38 0.48 3.16 16
23 C 0.07 1.78 2.89 30.62 0.09 1.86 16
24 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16
25 C -0.14 -2.16 5.42 30.69 0.17 -1.99 16
26 C -0.11 -1.79 6.03 30.72 0.19 -1.60 16
27 C -0.15 -3.23 6.14 30.69 0.19 -3.04 16
28 C 0.06 1.96 6.84 72.01 0.49 2.45 16
29 O -0.39 -13.32 9.47 -148.98 -1.41 -14.73 16
30 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16
31 H 0.05 0.60 5.52 -2.39 -0.01 0.59 16
32 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16
33 H 0.05 1.23 7.92 -2.39 -0.02 1.21 16
34 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16
35 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16
36 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16
37 H 0.07 2.94 6.95 -2.39 -0.02 2.93 16
38 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16
39 H -0.02 -1.25 8.14 -2.39 -0.02 -1.27 16
40 H -0.01 -0.69 7.90 -2.39 -0.02 -0.71 16
41 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16
42 H 0.11 2.59 7.23 -2.39 -0.02 2.57 16
43 H 0.14 2.40 5.35 -2.39 -0.01 2.39 16
44 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16
45 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16
46 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16
47 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16
48 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16
49 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16
50 H 0.07 2.54 8.14 -2.39 -0.02 2.53 16
51 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16
Total: -1.00 -79.45 406.61 5.09 -74.36
By element:
Atomic # 1 Polarization: 15.67 SS G_CDS: 0.91 Total: 16.58 kcal
Atomic # 6 Polarization: -8.12 SS G_CDS: 8.39 Total: 0.27 kcal
Atomic # 7 Polarization: -111.47 SS G_CDS: -4.28 Total: -115.74 kcal
Atomic # 8 Polarization: -19.73 SS G_CDS: -1.96 Total: -21.68 kcal
Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal
Total: -79.45 5.09 -74.36 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001526483801.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 86.213 kcal
(2) G-P(sol) polarization free energy of solvation -79.453 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.760 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.091 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.362 kcal
(6) G-S(sol) free energy of system = (1) + (5) 11.851 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.11 seconds